Experiment: Ceftazidime 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_1321 and psaE are separated by 179 nucleotides psaE and fpg are separated by 108 nucleotides fpg and Synpcc7942_1324 are separated by 31 nucleotides
Synpcc7942_1321: Synpcc7942_1321 - hypothetical protein, at 1,350,414 to 1,351,433
_1321
Synpcc7942_1322: psaE - photosystem I reaction center subunit IV, at 1,351,613 to 1,351,840
psaE
Synpcc7942_1323: fpg - DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase, at 1,351,949 to 1,352,797
fpg
Synpcc7942_1324: Synpcc7942_1324 - DEAD/DEAH box helicase-like, at 1,352,829 to 1,355,588
_1324
Position (kb) 1351
1352
1353 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 1350.977 kb on - strand, within Synpcc7942_1321 at 1351.043 kb on + strand, within Synpcc7942_1321 at 1351.049 kb on + strand, within Synpcc7942_1321 at 1351.068 kb on - strand, within Synpcc7942_1321 at 1351.095 kb on + strand, within Synpcc7942_1321 at 1351.103 kb on + strand, within Synpcc7942_1321 at 1351.122 kb on + strand, within Synpcc7942_1321 at 1351.149 kb on - strand, within Synpcc7942_1321 at 1351.166 kb on + strand, within Synpcc7942_1321 at 1351.166 kb on + strand, within Synpcc7942_1321 at 1351.174 kb on - strand, within Synpcc7942_1321 at 1351.176 kb on - strand, within Synpcc7942_1321 at 1351.199 kb on + strand, within Synpcc7942_1321 at 1351.207 kb on - strand, within Synpcc7942_1321 at 1351.207 kb on - strand, within Synpcc7942_1321 at 1351.207 kb on - strand, within Synpcc7942_1321 at 1351.207 kb on - strand, within Synpcc7942_1321 at 1351.207 kb on - strand, within Synpcc7942_1321 at 1351.207 kb on - strand, within Synpcc7942_1321 at 1351.207 kb on - strand, within Synpcc7942_1321 at 1351.207 kb on - strand, within Synpcc7942_1321 at 1351.224 kb on + strand, within Synpcc7942_1321 at 1351.226 kb on - strand, within Synpcc7942_1321 at 1351.234 kb on + strand, within Synpcc7942_1321 at 1351.254 kb on + strand, within Synpcc7942_1321 at 1351.271 kb on + strand, within Synpcc7942_1321 at 1351.272 kb on - strand, within Synpcc7942_1321 at 1351.275 kb on - strand, within Synpcc7942_1321 at 1351.279 kb on - strand, within Synpcc7942_1321 at 1351.321 kb on + strand, within Synpcc7942_1321 at 1351.321 kb on + strand, within Synpcc7942_1321 at 1351.321 kb on + strand, within Synpcc7942_1321 at 1351.329 kb on - strand, within Synpcc7942_1321 at 1351.329 kb on - strand, within Synpcc7942_1321 at 1351.357 kb on + strand at 1351.362 kb on - strand at 1351.375 kb on - strand at 1351.378 kb on - strand at 1351.389 kb on + strand at 1351.397 kb on - strand at 1351.423 kb on - strand at 1351.429 kb on + strand at 1351.429 kb on + strand at 1351.429 kb on + strand at 1351.432 kb on - strand at 1351.432 kb on - strand at 1351.437 kb on - strand at 1351.438 kb on - strand at 1351.450 kb on + strand at 1351.470 kb on - strand at 1351.472 kb on + strand at 1351.472 kb on + strand at 1351.480 kb on - strand at 1351.480 kb on - strand at 1351.480 kb on - strand at 1351.537 kb on - strand at 1351.592 kb on - strand at 1351.594 kb on + strand at 1351.610 kb on + strand at 1351.618 kb on - strand at 1351.637 kb on - strand, within psaE at 1351.637 kb on - strand, within psaE at 1351.687 kb on + strand, within psaE at 1351.724 kb on + strand, within psaE at 1351.740 kb on + strand, within psaE at 1351.830 kb on + strand at 1351.939 kb on + strand at 1351.950 kb on + strand at 1351.950 kb on + strand at 1351.958 kb on - strand at 1351.974 kb on + strand at 1351.980 kb on + strand at 1351.992 kb on - strand at 1352.002 kb on + strand at 1352.011 kb on + strand at 1352.030 kb on + strand at 1352.030 kb on + strand at 1352.030 kb on + strand at 1352.056 kb on + strand, within fpg at 1352.057 kb on + strand, within fpg at 1352.061 kb on + strand, within fpg at 1352.061 kb on + strand, within fpg at 1352.061 kb on + strand, within fpg at 1352.066 kb on + strand, within fpg at 1352.071 kb on + strand, within fpg at 1352.071 kb on - strand, within fpg at 1352.077 kb on - strand, within fpg at 1352.138 kb on + strand, within fpg at 1352.143 kb on + strand, within fpg at 1352.146 kb on - strand, within fpg at 1352.146 kb on - strand, within fpg at 1352.167 kb on + strand, within fpg at 1352.167 kb on + strand, within fpg at 1352.169 kb on + strand, within fpg at 1352.208 kb on + strand, within fpg at 1352.211 kb on - strand, within fpg at 1352.265 kb on - strand, within fpg at 1352.265 kb on - strand at 1352.308 kb on + strand, within fpg at 1352.313 kb on + strand, within fpg at 1352.316 kb on - strand, within fpg at 1352.321 kb on - strand, within fpg at 1352.378 kb on - strand, within fpg at 1352.387 kb on - strand, within fpg at 1352.438 kb on - strand, within fpg at 1352.472 kb on - strand, within fpg at 1352.520 kb on + strand, within fpg at 1352.528 kb on - strand, within fpg at 1352.535 kb on + strand, within fpg at 1352.535 kb on + strand, within fpg at 1352.535 kb on + strand, within fpg at 1352.543 kb on - strand, within fpg at 1352.546 kb on + strand, within fpg at 1352.586 kb on + strand, within fpg at 1352.607 kb on + strand, within fpg at 1352.615 kb on - strand, within fpg at 1352.662 kb on - strand, within fpg at 1352.687 kb on + strand, within fpg at 1352.687 kb on + strand, within fpg at 1352.689 kb on - strand, within fpg at 1352.695 kb on - strand, within fpg at 1352.702 kb on + strand at 1352.718 kb on + strand at 1352.767 kb on + strand at 1352.767 kb on + strand at 1352.775 kb on - strand at 1352.798 kb on - strand at 1352.798 kb on - strand at 1352.798 kb on - strand at 1352.800 kb on - strand at 1352.802 kb on + strand at 1352.825 kb on - strand at 1352.825 kb on - strand at 1352.825 kb on - strand at 1352.827 kb on + strand at 1352.827 kb on + strand at 1352.835 kb on - strand at 1352.907 kb on + strand at 1352.907 kb on + strand at 1352.909 kb on + strand at 1352.909 kb on + strand at 1352.909 kb on + strand at 1352.914 kb on + strand at 1352.927 kb on - strand at 1352.927 kb on - strand at 1352.984 kb on + strand at 1352.984 kb on + strand at 1352.984 kb on + strand at 1352.992 kb on - strand at 1353.016 kb on - strand at 1353.037 kb on + strand at 1353.037 kb on + strand at 1353.039 kb on - strand at 1353.039 kb on - strand at 1353.045 kb on - strand at 1353.067 kb on + strand at 1353.067 kb on + strand at 1353.138 kb on + strand, within Synpcc7942_1324 at 1353.143 kb on + strand, within Synpcc7942_1324 at 1353.147 kb on + strand, within Synpcc7942_1324 at 1353.157 kb on + strand, within Synpcc7942_1324 at 1353.213 kb on + strand, within Synpcc7942_1324 at 1353.215 kb on - strand, within Synpcc7942_1324 at 1353.250 kb on - strand, within Synpcc7942_1324 at 1353.257 kb on + strand, within Synpcc7942_1324 at 1353.260 kb on - strand, within Synpcc7942_1324 at 1353.267 kb on + strand, within Synpcc7942_1324 at 1353.267 kb on + strand, within Synpcc7942_1324 at 1353.267 kb on + strand, within Synpcc7942_1324 at 1353.272 kb on + strand, within Synpcc7942_1324 at 1353.275 kb on - strand, within Synpcc7942_1324 at 1353.275 kb on - strand, within Synpcc7942_1324 at 1353.275 kb on - strand, within Synpcc7942_1324 at 1353.275 kb on - strand, within Synpcc7942_1324 at 1353.278 kb on + strand, within Synpcc7942_1324 at 1353.278 kb on + strand, within Synpcc7942_1324 at 1353.280 kb on - strand, within Synpcc7942_1324 at 1353.311 kb on - strand, within Synpcc7942_1324 at 1353.337 kb on + strand, within Synpcc7942_1324 at 1353.382 kb on + strand, within Synpcc7942_1324 at 1353.395 kb on - strand, within Synpcc7942_1324 at 1353.395 kb on - strand, within Synpcc7942_1324 at 1353.400 kb on - strand, within Synpcc7942_1324 at 1353.461 kb on - strand, within Synpcc7942_1324 at 1353.478 kb on + strand, within Synpcc7942_1324 at 1353.511 kb on - strand, within Synpcc7942_1324 at 1353.515 kb on + strand, within Synpcc7942_1324 at 1353.549 kb on + strand, within Synpcc7942_1324 at 1353.557 kb on - strand, within Synpcc7942_1324 at 1353.572 kb on - strand, within Synpcc7942_1324 at 1353.589 kb on + strand, within Synpcc7942_1324 at 1353.593 kb on - strand at 1353.604 kb on + strand, within Synpcc7942_1324 at 1353.625 kb on + strand, within Synpcc7942_1324 at 1353.642 kb on + strand, within Synpcc7942_1324 at 1353.643 kb on + strand, within Synpcc7942_1324 at 1353.666 kb on - strand, within Synpcc7942_1324 at 1353.672 kb on - strand, within Synpcc7942_1324 at 1353.687 kb on + strand, within Synpcc7942_1324 at 1353.690 kb on - strand at 1353.692 kb on + strand at 1353.695 kb on + strand, within Synpcc7942_1324 at 1353.695 kb on - strand, within Synpcc7942_1324 at 1353.721 kb on + strand, within Synpcc7942_1324 at 1353.729 kb on - strand, within Synpcc7942_1324 at 1353.729 kb on - strand, within Synpcc7942_1324 at 1353.729 kb on - strand, within Synpcc7942_1324 at 1353.737 kb on + strand, within Synpcc7942_1324 at 1353.740 kb on - strand, within Synpcc7942_1324 at 1353.778 kb on + strand, within Synpcc7942_1324 at 1353.778 kb on + strand, within Synpcc7942_1324 at 1353.786 kb on - strand, within Synpcc7942_1324 at 1353.786 kb on - strand, within Synpcc7942_1324 at 1353.794 kb on + strand, within Synpcc7942_1324 at 1353.794 kb on + strand, within Synpcc7942_1324
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.125 mg/ml remove 1,350,977 - Synpcc7942_1321 0.55 -1.6 1,351,043 + Synpcc7942_1321 0.62 -1.9 1,351,049 + Synpcc7942_1321 0.62 -1.6 1,351,068 - Synpcc7942_1321 0.64 +1.0 1,351,095 + Synpcc7942_1321 0.67 +2.6 1,351,103 + Synpcc7942_1321 0.68 -0.3 1,351,122 + Synpcc7942_1321 0.69 -0.0 1,351,149 - Synpcc7942_1321 0.72 -1.0 1,351,166 + Synpcc7942_1321 0.74 +1.0 1,351,166 + Synpcc7942_1321 0.74 -2.4 1,351,174 - Synpcc7942_1321 0.75 -0.0 1,351,176 - Synpcc7942_1321 0.75 -1.6 1,351,199 + Synpcc7942_1321 0.77 -1.0 1,351,207 - Synpcc7942_1321 0.78 -1.6 1,351,207 - Synpcc7942_1321 0.78 -0.0 1,351,207 - Synpcc7942_1321 0.78 -0.9 1,351,207 - Synpcc7942_1321 0.78 +5.2 1,351,207 - Synpcc7942_1321 0.78 +1.6 1,351,207 - Synpcc7942_1321 0.78 -0.0 1,351,207 - Synpcc7942_1321 0.78 +2.0 1,351,207 - Synpcc7942_1321 0.78 -0.0 1,351,224 + Synpcc7942_1321 0.79 +1.0 1,351,226 - Synpcc7942_1321 0.80 -1.8 1,351,234 + Synpcc7942_1321 0.80 -0.6 1,351,254 + Synpcc7942_1321 0.82 +0.2 1,351,271 + Synpcc7942_1321 0.84 -0.0 1,351,272 - Synpcc7942_1321 0.84 -0.0 1,351,275 - Synpcc7942_1321 0.84 -0.3 1,351,279 - Synpcc7942_1321 0.85 +0.4 1,351,321 + Synpcc7942_1321 0.89 +0.4 1,351,321 + Synpcc7942_1321 0.89 +0.6 1,351,321 + Synpcc7942_1321 0.89 -2.0 1,351,329 - Synpcc7942_1321 0.90 -0.2 1,351,329 - Synpcc7942_1321 0.90 -0.0 1,351,357 + -0.6 1,351,362 - -0.3 1,351,375 - +1.3 1,351,378 - -1.2 1,351,389 + +0.6 1,351,397 - +1.0 1,351,423 - -0.0 1,351,429 + -2.4 1,351,429 + +2.2 1,351,429 + -1.7 1,351,432 - -2.5 1,351,432 - -0.6 1,351,437 - +0.7 1,351,438 - -1.0 1,351,450 + +1.0 1,351,470 - -0.5 1,351,472 + +1.6 1,351,472 + -0.6 1,351,480 - +2.2 1,351,480 - +2.0 1,351,480 - +1.9 1,351,537 - +1.3 1,351,592 - +1.6 1,351,594 + -0.6 1,351,610 + -1.7 1,351,618 - -1.6 1,351,637 - psaE Synpcc7942_1322 0.11 -0.5 1,351,637 - psaE Synpcc7942_1322 0.11 -1.8 1,351,687 + psaE Synpcc7942_1322 0.32 -0.0 1,351,724 + psaE Synpcc7942_1322 0.49 +1.0 1,351,740 + psaE Synpcc7942_1322 0.56 -0.6 1,351,830 + -0.4 1,351,939 + -0.6 1,351,950 + -0.6 1,351,950 + -0.2 1,351,958 - -0.0 1,351,974 + -0.8 1,351,980 + +2.7 1,351,992 - -0.2 1,352,002 + -0.4 1,352,011 + +4.4 1,352,030 + -0.6 1,352,030 + -1.9 1,352,030 + +2.1 1,352,056 + fpg Synpcc7942_1323 0.13 -0.0 1,352,057 + fpg Synpcc7942_1323 0.13 +1.9 1,352,061 + fpg Synpcc7942_1323 0.13 +1.0 1,352,061 + fpg Synpcc7942_1323 0.13 -2.5 1,352,061 + fpg Synpcc7942_1323 0.13 +0.4 1,352,066 + fpg Synpcc7942_1323 0.14 -1.6 1,352,071 + fpg Synpcc7942_1323 0.14 -0.6 1,352,071 - fpg Synpcc7942_1323 0.14 -0.6 1,352,077 - fpg Synpcc7942_1323 0.15 +4.6 1,352,138 + fpg Synpcc7942_1323 0.22 +1.0 1,352,143 + fpg Synpcc7942_1323 0.23 +0.1 1,352,146 - fpg Synpcc7942_1323 0.23 -1.3 1,352,146 - fpg Synpcc7942_1323 0.23 -1.8 1,352,167 + fpg Synpcc7942_1323 0.26 -1.0 1,352,167 + fpg Synpcc7942_1323 0.26 +1.4 1,352,169 + fpg Synpcc7942_1323 0.26 -0.1 1,352,208 + fpg Synpcc7942_1323 0.31 -0.3 1,352,211 - fpg Synpcc7942_1323 0.31 +1.1 1,352,265 - fpg Synpcc7942_1323 0.37 -1.8 1,352,265 - +1.0 1,352,308 + fpg Synpcc7942_1323 0.42 -1.0 1,352,313 + fpg Synpcc7942_1323 0.43 +0.1 1,352,316 - fpg Synpcc7942_1323 0.43 -1.3 1,352,321 - fpg Synpcc7942_1323 0.44 -1.3 1,352,378 - fpg Synpcc7942_1323 0.51 +0.4 1,352,387 - fpg Synpcc7942_1323 0.52 -0.0 1,352,438 - fpg Synpcc7942_1323 0.58 +1.0 1,352,472 - fpg Synpcc7942_1323 0.62 -0.6 1,352,520 + fpg Synpcc7942_1323 0.67 -2.4 1,352,528 - fpg Synpcc7942_1323 0.68 +2.9 1,352,535 + fpg Synpcc7942_1323 0.69 -0.8 1,352,535 + fpg Synpcc7942_1323 0.69 -3.2 1,352,535 + fpg Synpcc7942_1323 0.69 +2.6 1,352,543 - fpg Synpcc7942_1323 0.70 +0.0 1,352,546 + fpg Synpcc7942_1323 0.70 -0.4 1,352,586 + fpg Synpcc7942_1323 0.75 -0.0 1,352,607 + fpg Synpcc7942_1323 0.78 +2.0 1,352,615 - fpg Synpcc7942_1323 0.78 +1.3 1,352,662 - fpg Synpcc7942_1323 0.84 -1.5 1,352,687 + fpg Synpcc7942_1323 0.87 -0.6 1,352,687 + fpg Synpcc7942_1323 0.87 -0.8 1,352,689 - fpg Synpcc7942_1323 0.87 -0.0 1,352,695 - fpg Synpcc7942_1323 0.88 +0.7 1,352,702 + -0.6 1,352,718 + +0.4 1,352,767 + +1.0 1,352,767 + +1.0 1,352,775 - -2.0 1,352,798 - +0.8 1,352,798 - +0.3 1,352,798 - -2.0 1,352,800 - +1.3 1,352,802 + +2.3 1,352,825 - -1.4 1,352,825 - +1.0 1,352,825 - +1.0 1,352,827 + -1.0 1,352,827 + +0.1 1,352,835 - -0.0 1,352,907 + -1.0 1,352,907 + +2.0 1,352,909 + -0.4 1,352,909 + +3.0 1,352,909 + -1.4 1,352,914 + +0.8 1,352,927 - +1.7 1,352,927 - -1.0 1,352,984 + -1.0 1,352,984 + +1.0 1,352,984 + +2.6 1,352,992 - -1.6 1,353,016 - -0.0 1,353,037 + -0.0 1,353,037 + +1.0 1,353,039 - +4.4 1,353,039 - +1.5 1,353,045 - +0.3 1,353,067 + +2.4 1,353,067 + -1.0 1,353,138 + Synpcc7942_1324 0.11 -1.6 1,353,143 + Synpcc7942_1324 0.11 -0.0 1,353,147 + Synpcc7942_1324 0.12 +3.4 1,353,157 + Synpcc7942_1324 0.12 +1.2 1,353,213 + Synpcc7942_1324 0.14 -0.8 1,353,215 - Synpcc7942_1324 0.14 +1.7 1,353,250 - Synpcc7942_1324 0.15 -1.7 1,353,257 + Synpcc7942_1324 0.16 +0.7 1,353,260 - Synpcc7942_1324 0.16 +1.0 1,353,267 + Synpcc7942_1324 0.16 +1.3 1,353,267 + Synpcc7942_1324 0.16 +0.2 1,353,267 + Synpcc7942_1324 0.16 +1.4 1,353,272 + Synpcc7942_1324 0.16 +1.0 1,353,275 - Synpcc7942_1324 0.16 -1.6 1,353,275 - Synpcc7942_1324 0.16 +1.2 1,353,275 - Synpcc7942_1324 0.16 +1.0 1,353,275 - Synpcc7942_1324 0.16 +0.2 1,353,278 + Synpcc7942_1324 0.16 -1.0 1,353,278 + Synpcc7942_1324 0.16 -0.0 1,353,280 - Synpcc7942_1324 0.16 -1.8 1,353,311 - Synpcc7942_1324 0.17 +2.3 1,353,337 + Synpcc7942_1324 0.18 -2.0 1,353,382 + Synpcc7942_1324 0.20 -0.6 1,353,395 - Synpcc7942_1324 0.21 -0.6 1,353,395 - Synpcc7942_1324 0.21 -2.7 1,353,400 - Synpcc7942_1324 0.21 +1.3 1,353,461 - Synpcc7942_1324 0.23 -0.6 1,353,478 + Synpcc7942_1324 0.24 -0.6 1,353,511 - Synpcc7942_1324 0.25 -0.0 1,353,515 + Synpcc7942_1324 0.25 -1.6 1,353,549 + Synpcc7942_1324 0.26 -1.0 1,353,557 - Synpcc7942_1324 0.26 -0.6 1,353,572 - Synpcc7942_1324 0.27 -0.6 1,353,589 + Synpcc7942_1324 0.28 -2.5 1,353,593 - +1.0 1,353,604 + Synpcc7942_1324 0.28 -1.0 1,353,625 + Synpcc7942_1324 0.29 -0.4 1,353,642 + Synpcc7942_1324 0.29 +1.0 1,353,643 + Synpcc7942_1324 0.29 -1.0 1,353,666 - Synpcc7942_1324 0.30 -2.1 1,353,672 - Synpcc7942_1324 0.31 +1.0 1,353,687 + Synpcc7942_1324 0.31 -0.0 1,353,690 - +1.0 1,353,692 + +2.0 1,353,695 + Synpcc7942_1324 0.31 -1.0 1,353,695 - Synpcc7942_1324 0.31 -0.4 1,353,721 + Synpcc7942_1324 0.32 -0.6 1,353,729 - Synpcc7942_1324 0.33 +0.3 1,353,729 - Synpcc7942_1324 0.33 -1.0 1,353,729 - Synpcc7942_1324 0.33 -1.0 1,353,737 + Synpcc7942_1324 0.33 -3.2 1,353,740 - Synpcc7942_1324 0.33 -0.3 1,353,778 + Synpcc7942_1324 0.34 -0.2 1,353,778 + Synpcc7942_1324 0.34 +3.1 1,353,786 - Synpcc7942_1324 0.35 +1.0 1,353,786 - Synpcc7942_1324 0.35 +1.2 1,353,794 + Synpcc7942_1324 0.35 +3.3 1,353,794 + Synpcc7942_1324 0.35 +0.8
Or see this region's nucleotide sequence