Experiment: Ceftazidime 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0960 and Synpcc7942_0961 are separated by 88 nucleotides Synpcc7942_0961 and sun are separated by 17 nucleotides
Synpcc7942_0960: Synpcc7942_0960 - ATPase, at 967,595 to 968,848
_0960
Synpcc7942_0961: Synpcc7942_0961 - cell envelope-related function transcriptional attenuator common domain, at 968,937 to 969,950
_0961
Synpcc7942_0962: sun - sun protein, at 969,968 to 971,323
sun
Position (kb) 968
969
970 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 968.682 kb on + strand, within Synpcc7942_0960 at 968.773 kb on + strand at 968.867 kb on - strand at 968.889 kb on - strand at 968.908 kb on + strand at 968.912 kb on - strand at 968.916 kb on - strand at 968.916 kb on - strand at 968.922 kb on - strand at 968.985 kb on + strand at 969.005 kb on + strand at 969.006 kb on - strand at 969.017 kb on + strand at 969.029 kb on + strand at 969.044 kb on - strand, within Synpcc7942_0961 at 969.061 kb on - strand, within Synpcc7942_0961 at 969.093 kb on + strand, within Synpcc7942_0961 at 969.093 kb on + strand, within Synpcc7942_0961 at 969.101 kb on - strand, within Synpcc7942_0961 at 969.101 kb on - strand, within Synpcc7942_0961 at 969.101 kb on - strand, within Synpcc7942_0961 at 969.122 kb on - strand, within Synpcc7942_0961 at 969.140 kb on - strand, within Synpcc7942_0961 at 969.146 kb on + strand, within Synpcc7942_0961 at 969.209 kb on - strand, within Synpcc7942_0961 at 969.213 kb on - strand, within Synpcc7942_0961 at 969.272 kb on - strand, within Synpcc7942_0961 at 969.298 kb on - strand, within Synpcc7942_0961 at 969.329 kb on + strand, within Synpcc7942_0961 at 969.382 kb on + strand, within Synpcc7942_0961 at 969.407 kb on + strand, within Synpcc7942_0961 at 969.429 kb on - strand, within Synpcc7942_0961 at 969.431 kb on + strand, within Synpcc7942_0961 at 969.441 kb on + strand, within Synpcc7942_0961 at 969.451 kb on - strand, within Synpcc7942_0961 at 969.453 kb on + strand, within Synpcc7942_0961 at 969.460 kb on + strand, within Synpcc7942_0961 at 969.472 kb on + strand, within Synpcc7942_0961 at 969.472 kb on + strand, within Synpcc7942_0961 at 969.512 kb on + strand, within Synpcc7942_0961 at 969.512 kb on + strand, within Synpcc7942_0961 at 969.512 kb on + strand, within Synpcc7942_0961 at 969.512 kb on + strand, within Synpcc7942_0961 at 969.512 kb on + strand, within Synpcc7942_0961 at 969.531 kb on + strand, within Synpcc7942_0961 at 969.539 kb on - strand, within Synpcc7942_0961 at 969.554 kb on + strand, within Synpcc7942_0961 at 969.558 kb on + strand, within Synpcc7942_0961 at 969.566 kb on - strand, within Synpcc7942_0961 at 969.566 kb on - strand, within Synpcc7942_0961 at 969.586 kb on - strand, within Synpcc7942_0961 at 969.587 kb on + strand, within Synpcc7942_0961 at 969.607 kb on - strand, within Synpcc7942_0961 at 969.640 kb on + strand, within Synpcc7942_0961 at 969.640 kb on + strand at 969.648 kb on - strand, within Synpcc7942_0961 at 969.663 kb on + strand, within Synpcc7942_0961 at 969.663 kb on + strand at 969.664 kb on + strand, within Synpcc7942_0961 at 969.670 kb on - strand, within Synpcc7942_0961 at 969.672 kb on - strand, within Synpcc7942_0961 at 969.674 kb on + strand, within Synpcc7942_0961 at 969.674 kb on + strand, within Synpcc7942_0961 at 969.679 kb on + strand, within Synpcc7942_0961 at 969.682 kb on - strand, within Synpcc7942_0961 at 969.698 kb on - strand, within Synpcc7942_0961 at 969.708 kb on - strand, within Synpcc7942_0961 at 969.708 kb on - strand, within Synpcc7942_0961 at 969.708 kb on - strand, within Synpcc7942_0961 at 969.708 kb on - strand, within Synpcc7942_0961 at 969.745 kb on - strand, within Synpcc7942_0961 at 969.767 kb on - strand, within Synpcc7942_0961 at 969.785 kb on + strand, within Synpcc7942_0961 at 969.841 kb on + strand, within Synpcc7942_0961 at 969.846 kb on + strand, within Synpcc7942_0961 at 969.849 kb on - strand at 969.862 kb on - strand at 969.862 kb on - strand at 969.872 kb on - strand at 969.884 kb on - strand at 969.892 kb on + strand at 969.929 kb on + strand at 969.937 kb on - strand at 969.942 kb on - strand at 969.961 kb on + strand at 969.978 kb on - strand at 969.978 kb on - strand at 969.978 kb on - strand at 969.978 kb on - strand at 969.978 kb on - strand at 969.997 kb on - strand at 970.053 kb on - strand at 970.058 kb on - strand at 970.061 kb on + strand at 970.062 kb on + strand at 970.077 kb on + strand at 970.084 kb on - strand at 970.092 kb on + strand at 970.143 kb on + strand, within sun at 970.181 kb on + strand, within sun at 970.210 kb on + strand, within sun at 970.210 kb on + strand, within sun at 970.266 kb on + strand, within sun at 970.295 kb on + strand, within sun at 970.295 kb on + strand, within sun at 970.304 kb on - strand, within sun at 970.307 kb on + strand, within sun at 970.307 kb on + strand, within sun at 970.315 kb on - strand, within sun at 970.315 kb on - strand, within sun at 970.315 kb on - strand, within sun at 970.315 kb on - strand, within sun at 970.315 kb on - strand, within sun at 970.315 kb on - strand, within sun at 970.325 kb on - strand, within sun at 970.356 kb on + strand, within sun at 970.356 kb on + strand, within sun at 970.364 kb on - strand, within sun at 970.381 kb on + strand, within sun at 970.381 kb on + strand, within sun at 970.395 kb on - strand, within sun at 970.405 kb on - strand, within sun at 970.428 kb on + strand, within sun at 970.429 kb on - strand, within sun at 970.436 kb on - strand, within sun at 970.484 kb on - strand, within sun at 970.540 kb on - strand, within sun at 970.587 kb on + strand, within sun at 970.592 kb on + strand, within sun at 970.592 kb on + strand, within sun at 970.618 kb on - strand, within sun at 970.622 kb on + strand, within sun at 970.651 kb on + strand, within sun at 970.669 kb on - strand, within sun at 970.676 kb on - strand, within sun at 970.686 kb on - strand, within sun at 970.721 kb on + strand, within sun at 970.730 kb on - strand, within sun at 970.743 kb on + strand, within sun at 970.751 kb on - strand, within sun at 970.751 kb on - strand, within sun at 970.751 kb on - strand at 970.773 kb on - strand, within sun at 970.773 kb on - strand, within sun at 970.814 kb on + strand, within sun at 970.814 kb on + strand, within sun at 970.833 kb on + strand, within sun at 970.833 kb on + strand, within sun at 970.838 kb on + strand, within sun at 970.841 kb on - strand, within sun at 970.841 kb on - strand, within sun at 970.841 kb on - strand, within sun at 970.841 kb on - strand, within sun at 970.841 kb on - strand, within sun at 970.851 kb on - strand, within sun at 970.862 kb on + strand, within sun
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.125 mg/ml remove 968,682 + Synpcc7942_0960 0.87 -0.1 968,773 + -2.3 968,867 - -1.8 968,889 - -0.9 968,908 + -2.4 968,912 - +1.1 968,916 - +1.3 968,916 - +1.1 968,922 - -1.9 968,985 + +0.9 969,005 + -0.3 969,006 - +1.6 969,017 + -2.6 969,029 + -0.1 969,044 - Synpcc7942_0961 0.11 +0.1 969,061 - Synpcc7942_0961 0.12 -0.9 969,093 + Synpcc7942_0961 0.15 -0.9 969,093 + Synpcc7942_0961 0.15 -1.3 969,101 - Synpcc7942_0961 0.16 -1.7 969,101 - Synpcc7942_0961 0.16 -1.9 969,101 - Synpcc7942_0961 0.16 -0.8 969,122 - Synpcc7942_0961 0.18 -1.4 969,140 - Synpcc7942_0961 0.20 -3.0 969,146 + Synpcc7942_0961 0.21 -2.3 969,209 - Synpcc7942_0961 0.27 -0.2 969,213 - Synpcc7942_0961 0.27 -2.4 969,272 - Synpcc7942_0961 0.33 -0.9 969,298 - Synpcc7942_0961 0.36 -0.1 969,329 + Synpcc7942_0961 0.39 -0.2 969,382 + Synpcc7942_0961 0.44 -1.4 969,407 + Synpcc7942_0961 0.46 -1.3 969,429 - Synpcc7942_0961 0.49 -0.7 969,431 + Synpcc7942_0961 0.49 -0.1 969,441 + Synpcc7942_0961 0.50 -0.4 969,451 - Synpcc7942_0961 0.51 +2.2 969,453 + Synpcc7942_0961 0.51 -1.1 969,460 + Synpcc7942_0961 0.52 -0.1 969,472 + Synpcc7942_0961 0.53 -0.1 969,472 + Synpcc7942_0961 0.53 -0.8 969,512 + Synpcc7942_0961 0.57 -0.7 969,512 + Synpcc7942_0961 0.57 -0.7 969,512 + Synpcc7942_0961 0.57 -0.7 969,512 + Synpcc7942_0961 0.57 +0.3 969,512 + Synpcc7942_0961 0.57 -1.6 969,531 + Synpcc7942_0961 0.59 -2.4 969,539 - Synpcc7942_0961 0.59 -1.8 969,554 + Synpcc7942_0961 0.61 +0.0 969,558 + Synpcc7942_0961 0.61 -0.4 969,566 - Synpcc7942_0961 0.62 -1.4 969,566 - Synpcc7942_0961 0.62 -1.2 969,586 - Synpcc7942_0961 0.64 +0.9 969,587 + Synpcc7942_0961 0.64 -1.4 969,607 - Synpcc7942_0961 0.66 -1.7 969,640 + Synpcc7942_0961 0.69 -0.1 969,640 + -0.1 969,648 - Synpcc7942_0961 0.70 -2.6 969,663 + Synpcc7942_0961 0.72 -1.1 969,663 + +0.9 969,664 + Synpcc7942_0961 0.72 +0.3 969,670 - Synpcc7942_0961 0.72 +0.5 969,672 - Synpcc7942_0961 0.72 +0.3 969,674 + Synpcc7942_0961 0.73 -0.7 969,674 + Synpcc7942_0961 0.73 +2.5 969,679 + Synpcc7942_0961 0.73 +0.2 969,682 - Synpcc7942_0961 0.73 -1.4 969,698 - Synpcc7942_0961 0.75 +0.9 969,708 - Synpcc7942_0961 0.76 +0.9 969,708 - Synpcc7942_0961 0.76 -1.1 969,708 - Synpcc7942_0961 0.76 -1.7 969,708 - Synpcc7942_0961 0.76 -0.9 969,745 - Synpcc7942_0961 0.80 -1.1 969,767 - Synpcc7942_0961 0.82 +0.3 969,785 + Synpcc7942_0961 0.84 -0.7 969,841 + Synpcc7942_0961 0.89 +0.9 969,846 + Synpcc7942_0961 0.90 -1.0 969,849 - -1.4 969,862 - +3.6 969,862 - -0.4 969,872 - +0.2 969,884 - -0.6 969,892 + -0.1 969,929 + +0.9 969,937 - -1.7 969,942 - -0.0 969,961 + -0.3 969,978 - +0.9 969,978 - -1.0 969,978 - -0.4 969,978 - -2.1 969,978 - -0.4 969,997 - +1.2 970,053 - -2.4 970,058 - +1.3 970,061 + -1.7 970,062 + +0.9 970,077 + +0.2 970,084 - -0.1 970,092 + -1.0 970,143 + sun Synpcc7942_0962 0.13 -0.1 970,181 + sun Synpcc7942_0962 0.16 -1.7 970,210 + sun Synpcc7942_0962 0.18 -1.4 970,210 + sun Synpcc7942_0962 0.18 +0.9 970,266 + sun Synpcc7942_0962 0.22 -1.7 970,295 + sun Synpcc7942_0962 0.24 -0.7 970,295 + sun Synpcc7942_0962 0.24 -0.2 970,304 - sun Synpcc7942_0962 0.25 +0.2 970,307 + sun Synpcc7942_0962 0.25 +1.2 970,307 + sun Synpcc7942_0962 0.25 -0.7 970,315 - sun Synpcc7942_0962 0.26 +0.0 970,315 - sun Synpcc7942_0962 0.26 -1.7 970,315 - sun Synpcc7942_0962 0.26 +0.3 970,315 - sun Synpcc7942_0962 0.26 -0.8 970,315 - sun Synpcc7942_0962 0.26 +0.2 970,315 - sun Synpcc7942_0962 0.26 +0.3 970,325 - sun Synpcc7942_0962 0.26 -1.4 970,356 + sun Synpcc7942_0962 0.29 -1.7 970,356 + sun Synpcc7942_0962 0.29 -1.4 970,364 - sun Synpcc7942_0962 0.29 -0.3 970,381 + sun Synpcc7942_0962 0.30 +0.3 970,381 + sun Synpcc7942_0962 0.30 -0.8 970,395 - sun Synpcc7942_0962 0.31 +2.3 970,405 - sun Synpcc7942_0962 0.32 -0.1 970,428 + sun Synpcc7942_0962 0.34 -0.9 970,429 - sun Synpcc7942_0962 0.34 +0.3 970,436 - sun Synpcc7942_0962 0.35 +1.1 970,484 - sun Synpcc7942_0962 0.38 -0.4 970,540 - sun Synpcc7942_0962 0.42 -0.1 970,587 + sun Synpcc7942_0962 0.46 -0.1 970,592 + sun Synpcc7942_0962 0.46 -0.1 970,592 + sun Synpcc7942_0962 0.46 -1.1 970,618 - sun Synpcc7942_0962 0.48 -0.3 970,622 + sun Synpcc7942_0962 0.48 +0.9 970,651 + sun Synpcc7942_0962 0.50 +1.9 970,669 - sun Synpcc7942_0962 0.52 +0.9 970,676 - sun Synpcc7942_0962 0.52 -1.4 970,686 - sun Synpcc7942_0962 0.53 -2.1 970,721 + sun Synpcc7942_0962 0.56 -1.1 970,730 - sun Synpcc7942_0962 0.56 +0.6 970,743 + sun Synpcc7942_0962 0.57 -1.4 970,751 - sun Synpcc7942_0962 0.58 -4.2 970,751 - sun Synpcc7942_0962 0.58 +2.0 970,751 - -0.1 970,773 - sun Synpcc7942_0962 0.59 +0.9 970,773 - sun Synpcc7942_0962 0.59 -0.2 970,814 + sun Synpcc7942_0962 0.62 +0.6 970,814 + sun Synpcc7942_0962 0.62 +1.6 970,833 + sun Synpcc7942_0962 0.64 -2.8 970,833 + sun Synpcc7942_0962 0.64 -1.1 970,838 + sun Synpcc7942_0962 0.64 -1.4 970,841 - sun Synpcc7942_0962 0.64 -0.7 970,841 - sun Synpcc7942_0962 0.64 +2.1 970,841 - sun Synpcc7942_0962 0.64 -0.7 970,841 - sun Synpcc7942_0962 0.64 -0.7 970,841 - sun Synpcc7942_0962 0.64 -1.8 970,851 - sun Synpcc7942_0962 0.65 +0.3 970,862 + sun Synpcc7942_0962 0.66 -2.6
Or see this region's nucleotide sequence