Experiment: Ceftazidime 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0895 and minD are separated by 174 nucleotides minD and minE are separated by 14 nucleotides minE and Synpcc7942_0898 overlap by 4 nucleotides Synpcc7942_0898 and tRNA-Thr are separated by 13 nucleotides tRNA-Thr and Synpcc7942_0899 are separated by 95 nucleotides
Synpcc7942_0895: Synpcc7942_0895 - hypothetical protein, at 905,485 to 906,657
_0895
Synpcc7942_0896: minD - septum site-determining protein MinD, at 906,832 to 907,638
minD
Synpcc7942_0897: minE - cell division topological specificity factor MinE, at 907,653 to 907,928
minE
Synpcc7942_0898: Synpcc7942_0898 - ferredoxin like protein, at 907,925 to 908,317
_0898
Synpcc7942_R0041: tRNA-Thr - tRNA-Thr, at 908,331 to 908,402
tRNA-Thr
Synpcc7942_0899: Synpcc7942_0899 - hypothetical protein, at 908,498 to 909,295
_0899
Position (kb) 907
908 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 906.661 kb on + strand at 906.710 kb on - strand at 906.717 kb on + strand at 906.717 kb on + strand at 906.725 kb on - strand at 906.725 kb on - strand at 906.725 kb on - strand at 906.740 kb on + strand at 906.740 kb on + strand at 906.750 kb on + strand at 906.750 kb on + strand at 906.758 kb on - strand at 906.772 kb on + strand at 906.773 kb on + strand at 906.773 kb on + strand at 906.781 kb on - strand at 906.781 kb on - strand at 906.781 kb on - strand at 906.829 kb on + strand at 906.829 kb on - strand at 906.854 kb on + strand at 906.855 kb on - strand at 906.866 kb on - strand at 906.914 kb on - strand, within minD at 906.914 kb on - strand, within minD at 906.968 kb on - strand, within minD at 907.010 kb on + strand, within minD at 907.053 kb on + strand, within minD at 907.060 kb on + strand, within minD at 907.061 kb on - strand, within minD at 907.091 kb on - strand, within minD at 907.096 kb on + strand at 907.104 kb on - strand, within minD at 907.132 kb on - strand, within minD at 907.143 kb on + strand, within minD at 907.145 kb on + strand, within minD at 907.218 kb on - strand, within minD at 907.251 kb on - strand, within minD at 907.284 kb on - strand, within minD at 907.286 kb on - strand, within minD at 907.314 kb on - strand, within minD at 907.452 kb on + strand, within minD at 907.469 kb on + strand, within minD at 907.532 kb on - strand, within minD at 907.547 kb on - strand, within minD at 907.555 kb on + strand, within minD at 907.579 kb on - strand at 907.582 kb on + strand at 907.582 kb on + strand at 907.582 kb on + strand at 907.582 kb on + strand at 907.582 kb on + strand at 907.582 kb on + strand at 907.582 kb on + strand at 907.590 kb on - strand at 907.590 kb on - strand at 907.590 kb on - strand at 907.590 kb on - strand at 907.925 kb on - strand at 907.933 kb on + strand at 908.045 kb on + strand, within Synpcc7942_0898 at 908.045 kb on + strand, within Synpcc7942_0898 at 908.053 kb on - strand, within Synpcc7942_0898 at 908.059 kb on - strand, within Synpcc7942_0898 at 908.097 kb on + strand, within Synpcc7942_0898 at 908.114 kb on + strand, within Synpcc7942_0898 at 908.128 kb on + strand, within Synpcc7942_0898 at 908.134 kb on + strand, within Synpcc7942_0898 at 908.154 kb on + strand, within Synpcc7942_0898 at 908.154 kb on + strand, within Synpcc7942_0898 at 908.171 kb on - strand, within Synpcc7942_0898 at 908.179 kb on - strand, within Synpcc7942_0898 at 908.184 kb on - strand, within Synpcc7942_0898 at 908.211 kb on + strand, within Synpcc7942_0898 at 908.219 kb on - strand, within Synpcc7942_0898 at 908.243 kb on + strand, within Synpcc7942_0898 at 908.272 kb on - strand, within Synpcc7942_0898 at 908.311 kb on + strand at 908.415 kb on - strand at 908.457 kb on + strand at 908.503 kb on - strand at 908.505 kb on + strand at 908.508 kb on + strand at 908.521 kb on - strand at 908.531 kb on - strand at 908.533 kb on + strand at 908.533 kb on + strand at 908.544 kb on + strand at 908.547 kb on - strand at 908.549 kb on - strand at 908.563 kb on + strand at 908.575 kb on + strand at 908.591 kb on - strand, within Synpcc7942_0899 at 908.681 kb on + strand, within Synpcc7942_0899 at 908.681 kb on + strand, within Synpcc7942_0899 at 908.681 kb on + strand, within Synpcc7942_0899 at 908.696 kb on + strand, within Synpcc7942_0899 at 908.755 kb on + strand, within Synpcc7942_0899 at 908.758 kb on + strand, within Synpcc7942_0899 at 908.766 kb on - strand, within Synpcc7942_0899 at 908.846 kb on - strand, within Synpcc7942_0899 at 908.860 kb on + strand, within Synpcc7942_0899 at 908.865 kb on + strand, within Synpcc7942_0899 at 908.868 kb on - strand, within Synpcc7942_0899 at 908.876 kb on + strand, within Synpcc7942_0899 at 908.922 kb on + strand, within Synpcc7942_0899 at 908.922 kb on + strand, within Synpcc7942_0899 at 908.922 kb on + strand, within Synpcc7942_0899
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.125 mg/ml remove 906,661 + -1.3 906,710 - +2.5 906,717 + -0.7 906,717 + -1.4 906,725 - +0.5 906,725 - +0.4 906,725 - +3.7 906,740 + -0.1 906,740 + +1.9 906,750 + -2.6 906,750 + -0.1 906,758 - -1.7 906,772 + -0.1 906,773 + +2.7 906,773 + -0.7 906,781 - +0.6 906,781 - -0.1 906,781 - -0.1 906,829 + +3.6 906,829 - +1.9 906,854 + +3.0 906,855 - +0.6 906,866 - +0.7 906,914 - minD Synpcc7942_0896 0.10 +4.9 906,914 - minD Synpcc7942_0896 0.10 -1.1 906,968 - minD Synpcc7942_0896 0.17 -0.1 907,010 + minD Synpcc7942_0896 0.22 +4.0 907,053 + minD Synpcc7942_0896 0.27 +0.9 907,060 + minD Synpcc7942_0896 0.28 -0.7 907,061 - minD Synpcc7942_0896 0.28 +2.1 907,091 - minD Synpcc7942_0896 0.32 +3.9 907,096 + +0.9 907,104 - minD Synpcc7942_0896 0.34 -0.1 907,132 - minD Synpcc7942_0896 0.37 +0.6 907,143 + minD Synpcc7942_0896 0.39 -0.1 907,145 + minD Synpcc7942_0896 0.39 -2.3 907,218 - minD Synpcc7942_0896 0.48 -0.1 907,251 - minD Synpcc7942_0896 0.52 +2.0 907,284 - minD Synpcc7942_0896 0.56 +0.8 907,286 - minD Synpcc7942_0896 0.56 -0.7 907,314 - minD Synpcc7942_0896 0.60 -0.1 907,452 + minD Synpcc7942_0896 0.77 +0.5 907,469 + minD Synpcc7942_0896 0.79 +2.5 907,532 - minD Synpcc7942_0896 0.87 +0.9 907,547 - minD Synpcc7942_0896 0.89 +0.2 907,555 + minD Synpcc7942_0896 0.90 +0.3 907,579 - -0.1 907,582 + +1.2 907,582 + -1.7 907,582 + +4.1 907,582 + +1.8 907,582 + +2.1 907,582 + -0.7 907,582 + +3.5 907,590 - +0.6 907,590 - +2.2 907,590 - +2.5 907,590 - +0.1 907,925 - -0.1 907,933 + -0.7 908,045 + Synpcc7942_0898 0.31 +0.3 908,045 + Synpcc7942_0898 0.31 +1.7 908,053 - Synpcc7942_0898 0.33 +0.9 908,059 - Synpcc7942_0898 0.34 -0.7 908,097 + Synpcc7942_0898 0.44 +0.8 908,114 + Synpcc7942_0898 0.48 +1.9 908,128 + Synpcc7942_0898 0.52 -0.7 908,134 + Synpcc7942_0898 0.53 -1.1 908,154 + Synpcc7942_0898 0.58 -1.1 908,154 + Synpcc7942_0898 0.58 +2.6 908,171 - Synpcc7942_0898 0.63 -0.4 908,179 - Synpcc7942_0898 0.65 +1.7 908,184 - Synpcc7942_0898 0.66 +3.5 908,211 + Synpcc7942_0898 0.73 +0.2 908,219 - Synpcc7942_0898 0.75 -1.7 908,243 + Synpcc7942_0898 0.81 -0.1 908,272 - Synpcc7942_0898 0.88 +1.5 908,311 + -0.7 908,415 - -0.4 908,457 + -0.7 908,503 - -1.9 908,505 + +1.6 908,508 + -0.8 908,521 - -0.8 908,531 - -0.2 908,533 + -0.7 908,533 + -1.1 908,544 + -1.1 908,547 - -2.7 908,549 - +4.1 908,563 + -1.3 908,575 + -0.1 908,591 - Synpcc7942_0899 0.12 -1.7 908,681 + Synpcc7942_0899 0.23 +0.3 908,681 + Synpcc7942_0899 0.23 +2.5 908,681 + Synpcc7942_0899 0.23 +0.2 908,696 + Synpcc7942_0899 0.25 +0.6 908,755 + Synpcc7942_0899 0.32 +0.9 908,758 + Synpcc7942_0899 0.33 -0.4 908,766 - Synpcc7942_0899 0.34 -1.1 908,846 - Synpcc7942_0899 0.44 +1.4 908,860 + Synpcc7942_0899 0.45 -1.1 908,865 + Synpcc7942_0899 0.46 +1.2 908,868 - Synpcc7942_0899 0.46 -0.4 908,876 + Synpcc7942_0899 0.47 -0.1 908,922 + Synpcc7942_0899 0.53 +1.9 908,922 + Synpcc7942_0899 0.53 -1.1 908,922 + Synpcc7942_0899 0.53 +0.6
Or see this region's nucleotide sequence