Experiment: Ceftazidime 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0859 and Synpcc7942_0860 are separated by 10 nucleotides Synpcc7942_0860 and Synpcc7942_0861 are separated by 233 nucleotides
Synpcc7942_0859: Synpcc7942_0859 - CheA signal transduction histidine kinase, at 860,118 to 862,976
_0859
Synpcc7942_0860: Synpcc7942_0860 - CheW protein, at 862,987 to 863,946
_0860
Synpcc7942_0861: Synpcc7942_0861 - bifunctional sterol desaturase/short chain dehydrogenase, at 864,180 to 865,469
_0861
Position (kb) 862
863
864 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 862.138 kb on - strand, within Synpcc7942_0859 at 862.210 kb on + strand, within Synpcc7942_0859 at 862.264 kb on - strand, within Synpcc7942_0859 at 862.264 kb on - strand, within Synpcc7942_0859 at 862.341 kb on + strand, within Synpcc7942_0859 at 862.383 kb on + strand, within Synpcc7942_0859 at 862.401 kb on + strand, within Synpcc7942_0859 at 862.409 kb on - strand, within Synpcc7942_0859 at 862.410 kb on + strand, within Synpcc7942_0859 at 862.417 kb on - strand, within Synpcc7942_0859 at 862.468 kb on + strand, within Synpcc7942_0859 at 862.470 kb on + strand, within Synpcc7942_0859 at 862.470 kb on + strand, within Synpcc7942_0859 at 862.470 kb on + strand, within Synpcc7942_0859 at 862.470 kb on + strand, within Synpcc7942_0859 at 862.478 kb on - strand, within Synpcc7942_0859 at 862.478 kb on - strand, within Synpcc7942_0859 at 862.478 kb on - strand, within Synpcc7942_0859 at 862.478 kb on - strand, within Synpcc7942_0859 at 862.478 kb on - strand, within Synpcc7942_0859 at 862.780 kb on + strand at 862.834 kb on + strand at 862.847 kb on - strand at 862.853 kb on - strand at 862.858 kb on + strand at 862.858 kb on + strand at 862.969 kb on + strand at 862.978 kb on - strand at 862.994 kb on + strand at 862.994 kb on + strand at 863.081 kb on + strand at 863.138 kb on - strand, within Synpcc7942_0860 at 863.139 kb on - strand, within Synpcc7942_0860 at 863.149 kb on - strand, within Synpcc7942_0860 at 863.156 kb on + strand, within Synpcc7942_0860 at 863.156 kb on + strand, within Synpcc7942_0860 at 863.307 kb on + strand, within Synpcc7942_0860 at 863.411 kb on + strand, within Synpcc7942_0860 at 863.415 kb on + strand, within Synpcc7942_0860 at 863.416 kb on - strand, within Synpcc7942_0860 at 863.423 kb on - strand, within Synpcc7942_0860 at 863.423 kb on - strand, within Synpcc7942_0860 at 863.456 kb on + strand, within Synpcc7942_0860 at 863.499 kb on + strand, within Synpcc7942_0860 at 863.548 kb on - strand, within Synpcc7942_0860 at 863.560 kb on - strand, within Synpcc7942_0860 at 863.568 kb on + strand at 863.568 kb on + strand, within Synpcc7942_0860 at 863.629 kb on - strand, within Synpcc7942_0860 at 863.687 kb on + strand, within Synpcc7942_0860 at 863.713 kb on + strand, within Synpcc7942_0860 at 863.714 kb on + strand, within Synpcc7942_0860 at 863.731 kb on + strand, within Synpcc7942_0860 at 863.733 kb on - strand, within Synpcc7942_0860 at 863.739 kb on - strand, within Synpcc7942_0860 at 863.739 kb on - strand, within Synpcc7942_0860 at 863.801 kb on + strand, within Synpcc7942_0860 at 863.801 kb on + strand, within Synpcc7942_0860 at 863.809 kb on - strand, within Synpcc7942_0860 at 863.809 kb on - strand, within Synpcc7942_0860 at 863.809 kb on - strand, within Synpcc7942_0860 at 863.844 kb on - strand, within Synpcc7942_0860 at 863.844 kb on - strand, within Synpcc7942_0860 at 863.844 kb on - strand, within Synpcc7942_0860 at 863.854 kb on - strand at 863.926 kb on - strand at 863.951 kb on - strand at 864.047 kb on + strand at 864.092 kb on - strand at 864.102 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.125 mg/ml remove 862,138 - Synpcc7942_0859 0.71 -0.9 862,210 + Synpcc7942_0859 0.73 -0.3 862,264 - Synpcc7942_0859 0.75 -0.4 862,264 - Synpcc7942_0859 0.75 +0.6 862,341 + Synpcc7942_0859 0.78 -0.1 862,383 + Synpcc7942_0859 0.79 +1.2 862,401 + Synpcc7942_0859 0.80 -0.7 862,409 - Synpcc7942_0859 0.80 +2.0 862,410 + Synpcc7942_0859 0.80 +0.1 862,417 - Synpcc7942_0859 0.80 -0.3 862,468 + Synpcc7942_0859 0.82 +0.9 862,470 + Synpcc7942_0859 0.82 -0.2 862,470 + Synpcc7942_0859 0.82 +2.9 862,470 + Synpcc7942_0859 0.82 -1.0 862,470 + Synpcc7942_0859 0.82 +0.8 862,478 - Synpcc7942_0859 0.83 -2.4 862,478 - Synpcc7942_0859 0.83 -1.9 862,478 - Synpcc7942_0859 0.83 +1.6 862,478 - Synpcc7942_0859 0.83 -1.7 862,478 - Synpcc7942_0859 0.83 -3.2 862,780 + -1.4 862,834 + -0.1 862,847 - -1.1 862,853 - -1.2 862,858 + -1.7 862,858 + +2.0 862,969 + -1.4 862,978 - -0.7 862,994 + +1.9 862,994 + -0.2 863,081 + -1.4 863,138 - Synpcc7942_0860 0.16 +0.9 863,139 - Synpcc7942_0860 0.16 -0.0 863,149 - Synpcc7942_0860 0.17 +1.7 863,156 + Synpcc7942_0860 0.18 -2.2 863,156 + Synpcc7942_0860 0.18 -0.9 863,307 + Synpcc7942_0860 0.33 +0.3 863,411 + Synpcc7942_0860 0.44 +2.1 863,415 + Synpcc7942_0860 0.45 +0.1 863,416 - Synpcc7942_0860 0.45 +0.3 863,423 - Synpcc7942_0860 0.45 +0.6 863,423 - Synpcc7942_0860 0.45 +0.9 863,456 + Synpcc7942_0860 0.49 +0.6 863,499 + Synpcc7942_0860 0.53 -0.6 863,548 - Synpcc7942_0860 0.58 +0.6 863,560 - Synpcc7942_0860 0.60 -0.1 863,568 + -0.1 863,568 + Synpcc7942_0860 0.61 -1.1 863,629 - Synpcc7942_0860 0.67 -0.1 863,687 + Synpcc7942_0860 0.73 -0.2 863,713 + Synpcc7942_0860 0.76 -1.1 863,714 + Synpcc7942_0860 0.76 -2.1 863,731 + Synpcc7942_0860 0.78 +0.2 863,733 - Synpcc7942_0860 0.78 -0.7 863,739 - Synpcc7942_0860 0.78 +0.9 863,739 - Synpcc7942_0860 0.78 -0.4 863,801 + Synpcc7942_0860 0.85 +2.9 863,801 + Synpcc7942_0860 0.85 +0.3 863,809 - Synpcc7942_0860 0.86 -1.1 863,809 - Synpcc7942_0860 0.86 +2.7 863,809 - Synpcc7942_0860 0.86 -0.7 863,844 - Synpcc7942_0860 0.89 -0.7 863,844 - Synpcc7942_0860 0.89 -1.0 863,844 - Synpcc7942_0860 0.89 -0.1 863,854 - -1.7 863,926 - -0.4 863,951 - -1.1 864,047 + +1.4 864,092 - -2.2 864,102 - -0.6
Or see this region's nucleotide sequence