Experiment: Ceftazidime 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0768 and Synpcc7942_0769 are separated by 47 nucleotides Synpcc7942_0769 and Synpcc7942_0770 are separated by 30 nucleotides
Synpcc7942_0768: Synpcc7942_0768 - hypothetical protein, at 760,522 to 761,178
_0768
Synpcc7942_0769: Synpcc7942_0769 - hypothetical protein, at 761,226 to 762,128
_0769
Synpcc7942_0770: Synpcc7942_0770 - hypothetical protein, at 762,159 to 763,643
_0770
Position (kb) 761
762
763 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 760.244 kb on + strand at 760.252 kb on - strand at 760.252 kb on - strand at 760.252 kb on - strand at 760.252 kb on - strand at 760.260 kb on - strand at 760.311 kb on + strand at 760.337 kb on + strand at 760.337 kb on + strand at 760.342 kb on - strand at 760.345 kb on - strand at 760.347 kb on - strand at 760.349 kb on + strand at 760.380 kb on + strand at 760.380 kb on + strand at 760.380 kb on + strand at 760.380 kb on + strand at 760.380 kb on + strand at 760.380 kb on + strand at 760.380 kb on + strand at 760.380 kb on + strand at 760.380 kb on + strand at 760.380 kb on + strand at 760.380 kb on + strand at 760.380 kb on + strand at 760.388 kb on - strand at 760.388 kb on - strand at 760.388 kb on - strand at 760.388 kb on - strand at 760.388 kb on - strand at 760.390 kb on + strand at 760.390 kb on + strand at 760.398 kb on - strand at 760.398 kb on - strand at 760.400 kb on - strand at 760.417 kb on - strand at 760.457 kb on + strand at 760.457 kb on + strand at 760.489 kb on - strand at 760.589 kb on + strand, within Synpcc7942_0768 at 760.626 kb on + strand, within Synpcc7942_0768 at 760.633 kb on - strand, within Synpcc7942_0768 at 760.639 kb on + strand, within Synpcc7942_0768 at 760.644 kb on - strand, within Synpcc7942_0768 at 760.666 kb on - strand, within Synpcc7942_0768 at 760.704 kb on + strand, within Synpcc7942_0768 at 760.706 kb on + strand, within Synpcc7942_0768 at 760.712 kb on - strand, within Synpcc7942_0768 at 760.714 kb on - strand, within Synpcc7942_0768 at 760.714 kb on - strand, within Synpcc7942_0768 at 760.755 kb on + strand, within Synpcc7942_0768 at 760.755 kb on - strand, within Synpcc7942_0768 at 760.763 kb on - strand, within Synpcc7942_0768 at 760.769 kb on - strand, within Synpcc7942_0768 at 760.770 kb on + strand, within Synpcc7942_0768 at 760.783 kb on - strand, within Synpcc7942_0768 at 760.817 kb on - strand, within Synpcc7942_0768 at 760.833 kb on + strand, within Synpcc7942_0768 at 760.841 kb on - strand, within Synpcc7942_0768 at 760.844 kb on + strand, within Synpcc7942_0768 at 760.849 kb on + strand, within Synpcc7942_0768 at 760.852 kb on - strand, within Synpcc7942_0768 at 760.911 kb on + strand, within Synpcc7942_0768 at 760.917 kb on - strand, within Synpcc7942_0768 at 760.919 kb on - strand, within Synpcc7942_0768 at 760.919 kb on - strand at 760.934 kb on + strand, within Synpcc7942_0768 at 760.990 kb on - strand, within Synpcc7942_0768 at 760.995 kb on - strand, within Synpcc7942_0768 at 760.995 kb on - strand, within Synpcc7942_0768 at 760.997 kb on + strand, within Synpcc7942_0768 at 760.997 kb on + strand, within Synpcc7942_0768 at 760.997 kb on + strand, within Synpcc7942_0768 at 760.997 kb on + strand, within Synpcc7942_0768 at 760.997 kb on + strand, within Synpcc7942_0768 at 760.997 kb on + strand, within Synpcc7942_0768 at 761.000 kb on - strand, within Synpcc7942_0768 at 761.002 kb on + strand, within Synpcc7942_0768 at 761.005 kb on - strand, within Synpcc7942_0768 at 761.044 kb on + strand, within Synpcc7942_0768 at 761.044 kb on + strand, within Synpcc7942_0768 at 761.052 kb on - strand, within Synpcc7942_0768 at 761.090 kb on + strand, within Synpcc7942_0768 at 761.092 kb on + strand, within Synpcc7942_0768 at 761.097 kb on + strand, within Synpcc7942_0768 at 761.100 kb on + strand, within Synpcc7942_0768 at 761.120 kb on - strand at 761.120 kb on - strand at 761.136 kb on + strand at 761.136 kb on + strand at 761.136 kb on + strand at 761.144 kb on - strand at 761.173 kb on + strand at 761.173 kb on + strand at 761.181 kb on - strand at 761.181 kb on - strand at 761.210 kb on + strand at 761.215 kb on - strand at 761.238 kb on - strand at 761.256 kb on + strand at 761.340 kb on - strand, within Synpcc7942_0769 at 761.343 kb on + strand, within Synpcc7942_0769 at 761.361 kb on - strand, within Synpcc7942_0769 at 761.387 kb on + strand, within Synpcc7942_0769 at 761.387 kb on + strand, within Synpcc7942_0769 at 761.395 kb on - strand, within Synpcc7942_0769 at 761.433 kb on + strand, within Synpcc7942_0769 at 761.433 kb on + strand, within Synpcc7942_0769 at 761.441 kb on - strand, within Synpcc7942_0769 at 761.469 kb on - strand, within Synpcc7942_0769 at 761.470 kb on + strand, within Synpcc7942_0769 at 761.478 kb on - strand, within Synpcc7942_0769 at 761.492 kb on - strand, within Synpcc7942_0769 at 761.506 kb on - strand, within Synpcc7942_0769 at 761.533 kb on + strand, within Synpcc7942_0769 at 761.548 kb on + strand, within Synpcc7942_0769 at 761.549 kb on - strand, within Synpcc7942_0769 at 761.553 kb on + strand, within Synpcc7942_0769 at 761.563 kb on + strand, within Synpcc7942_0769 at 761.563 kb on - strand, within Synpcc7942_0769 at 761.565 kb on + strand, within Synpcc7942_0769 at 761.565 kb on + strand, within Synpcc7942_0769 at 761.602 kb on - strand, within Synpcc7942_0769 at 761.624 kb on - strand, within Synpcc7942_0769 at 761.641 kb on - strand, within Synpcc7942_0769 at 761.644 kb on + strand, within Synpcc7942_0769 at 761.657 kb on + strand, within Synpcc7942_0769 at 761.664 kb on - strand, within Synpcc7942_0769 at 761.669 kb on + strand, within Synpcc7942_0769 at 761.676 kb on - strand, within Synpcc7942_0769 at 761.753 kb on + strand, within Synpcc7942_0769 at 761.761 kb on - strand, within Synpcc7942_0769 at 761.761 kb on - strand, within Synpcc7942_0769 at 761.763 kb on + strand, within Synpcc7942_0769 at 761.768 kb on + strand, within Synpcc7942_0769 at 761.855 kb on + strand, within Synpcc7942_0769 at 761.855 kb on + strand, within Synpcc7942_0769 at 761.855 kb on + strand, within Synpcc7942_0769 at 761.933 kb on - strand, within Synpcc7942_0769 at 761.954 kb on + strand, within Synpcc7942_0769 at 761.962 kb on - strand, within Synpcc7942_0769 at 762.011 kb on - strand, within Synpcc7942_0769 at 762.044 kb on + strand at 762.052 kb on - strand at 762.054 kb on - strand at 762.073 kb on + strand at 762.105 kb on + strand at 762.113 kb on + strand at 762.142 kb on + strand at 762.149 kb on + strand at 762.150 kb on - strand at 762.157 kb on - strand at 762.170 kb on - strand at 762.187 kb on + strand at 762.192 kb on + strand at 762.193 kb on + strand at 762.193 kb on + strand at 762.195 kb on - strand at 762.203 kb on + strand at 762.208 kb on + strand at 762.238 kb on - strand at 762.254 kb on + strand at 762.277 kb on + strand at 762.285 kb on - strand at 762.285 kb on - strand at 762.285 kb on - strand at 762.314 kb on + strand, within Synpcc7942_0770 at 762.314 kb on + strand at 762.335 kb on + strand, within Synpcc7942_0770 at 762.343 kb on - strand, within Synpcc7942_0770 at 762.364 kb on - strand, within Synpcc7942_0770 at 762.391 kb on - strand at 762.391 kb on - strand, within Synpcc7942_0770 at 762.391 kb on - strand, within Synpcc7942_0770 at 762.396 kb on + strand, within Synpcc7942_0770 at 762.398 kb on + strand, within Synpcc7942_0770 at 762.404 kb on - strand, within Synpcc7942_0770 at 762.404 kb on - strand, within Synpcc7942_0770 at 762.404 kb on - strand, within Synpcc7942_0770 at 762.408 kb on + strand, within Synpcc7942_0770 at 762.421 kb on - strand, within Synpcc7942_0770 at 762.421 kb on - strand, within Synpcc7942_0770 at 762.433 kb on - strand, within Synpcc7942_0770 at 762.468 kb on + strand, within Synpcc7942_0770 at 762.468 kb on + strand, within Synpcc7942_0770 at 762.473 kb on + strand, within Synpcc7942_0770 at 762.476 kb on - strand, within Synpcc7942_0770 at 762.484 kb on + strand, within Synpcc7942_0770 at 762.548 kb on - strand, within Synpcc7942_0770 at 762.565 kb on - strand, within Synpcc7942_0770 at 762.587 kb on - strand, within Synpcc7942_0770 at 762.592 kb on - strand, within Synpcc7942_0770 at 762.711 kb on + strand, within Synpcc7942_0770 at 762.711 kb on + strand at 762.719 kb on - strand, within Synpcc7942_0770 at 762.719 kb on - strand, within Synpcc7942_0770 at 762.734 kb on + strand, within Synpcc7942_0770 at 762.742 kb on - strand, within Synpcc7942_0770 at 762.742 kb on - strand, within Synpcc7942_0770 at 762.762 kb on - strand, within Synpcc7942_0770 at 762.778 kb on - strand, within Synpcc7942_0770 at 762.778 kb on - strand, within Synpcc7942_0770 at 762.893 kb on + strand, within Synpcc7942_0770 at 762.908 kb on + strand, within Synpcc7942_0770 at 762.908 kb on - strand, within Synpcc7942_0770 at 762.913 kb on + strand, within Synpcc7942_0770 at 762.915 kb on + strand, within Synpcc7942_0770 at 762.920 kb on + strand, within Synpcc7942_0770 at 762.920 kb on + strand, within Synpcc7942_0770 at 762.920 kb on + strand, within Synpcc7942_0770 at 762.928 kb on - strand, within Synpcc7942_0770 at 762.954 kb on - strand, within Synpcc7942_0770 at 762.966 kb on + strand, within Synpcc7942_0770 at 762.966 kb on + strand, within Synpcc7942_0770 at 762.974 kb on - strand, within Synpcc7942_0770 at 762.974 kb on - strand, within Synpcc7942_0770 at 762.990 kb on + strand, within Synpcc7942_0770 at 762.998 kb on - strand, within Synpcc7942_0770 at 763.067 kb on - strand, within Synpcc7942_0770 at 763.105 kb on + strand, within Synpcc7942_0770 at 763.105 kb on + strand, within Synpcc7942_0770 at 763.105 kb on + strand, within Synpcc7942_0770 at 763.112 kb on - strand at 763.113 kb on - strand, within Synpcc7942_0770 at 763.113 kb on - strand, within Synpcc7942_0770 at 763.113 kb on - strand, within Synpcc7942_0770
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.125 mg/ml remove 760,244 + -1.1 760,252 - +1.5 760,252 - -1.7 760,252 - -2.3 760,252 - -2.4 760,260 - -1.3 760,311 + +1.9 760,337 + +0.3 760,337 + -1.4 760,342 - -1.8 760,345 - -2.1 760,347 - +2.0 760,349 + +0.9 760,380 + -0.7 760,380 + +0.6 760,380 + -0.1 760,380 + -0.7 760,380 + +0.5 760,380 + -0.7 760,380 + -1.4 760,380 + -1.7 760,380 + -0.1 760,380 + -1.8 760,380 + -0.5 760,380 + -0.6 760,388 - -3.1 760,388 - -1.1 760,388 - +0.9 760,388 - -0.6 760,388 - -0.1 760,390 + -0.9 760,390 + +2.8 760,398 - +0.1 760,398 - -1.1 760,400 - -1.0 760,417 - -0.1 760,457 + +1.0 760,457 + +1.9 760,489 - -0.6 760,589 + Synpcc7942_0768 0.10 +1.0 760,626 + Synpcc7942_0768 0.16 -0.7 760,633 - Synpcc7942_0768 0.17 -0.1 760,639 + Synpcc7942_0768 0.18 +0.9 760,644 - Synpcc7942_0768 0.19 -1.2 760,666 - Synpcc7942_0768 0.22 -0.4 760,704 + Synpcc7942_0768 0.28 -0.3 760,706 + Synpcc7942_0768 0.28 +0.9 760,712 - Synpcc7942_0768 0.29 -0.7 760,714 - Synpcc7942_0768 0.29 +0.9 760,714 - Synpcc7942_0768 0.29 +0.8 760,755 + Synpcc7942_0768 0.35 -0.1 760,755 - Synpcc7942_0768 0.35 -0.4 760,763 - Synpcc7942_0768 0.37 -1.4 760,769 - Synpcc7942_0768 0.38 +1.9 760,770 + Synpcc7942_0768 0.38 +0.1 760,783 - Synpcc7942_0768 0.40 -0.7 760,817 - Synpcc7942_0768 0.45 -0.0 760,833 + Synpcc7942_0768 0.47 -0.4 760,841 - Synpcc7942_0768 0.49 +2.2 760,844 + Synpcc7942_0768 0.49 +0.9 760,849 + Synpcc7942_0768 0.50 -1.5 760,852 - Synpcc7942_0768 0.50 +0.3 760,911 + Synpcc7942_0768 0.59 +0.4 760,917 - Synpcc7942_0768 0.60 +0.5 760,919 - Synpcc7942_0768 0.60 +1.3 760,919 - +0.9 760,934 + Synpcc7942_0768 0.63 -0.8 760,990 - Synpcc7942_0768 0.71 +1.0 760,995 - Synpcc7942_0768 0.72 -2.5 760,995 - Synpcc7942_0768 0.72 +0.4 760,997 + Synpcc7942_0768 0.72 +0.3 760,997 + Synpcc7942_0768 0.72 -2.3 760,997 + Synpcc7942_0768 0.72 -1.1 760,997 + Synpcc7942_0768 0.72 -2.8 760,997 + Synpcc7942_0768 0.72 -0.4 760,997 + Synpcc7942_0768 0.72 +1.8 761,000 - Synpcc7942_0768 0.73 -0.5 761,002 + Synpcc7942_0768 0.73 +0.3 761,005 - Synpcc7942_0768 0.74 -0.1 761,044 + Synpcc7942_0768 0.79 +1.4 761,044 + Synpcc7942_0768 0.79 -0.3 761,052 - Synpcc7942_0768 0.81 +0.4 761,090 + Synpcc7942_0768 0.86 +0.3 761,092 + Synpcc7942_0768 0.87 +0.6 761,097 + Synpcc7942_0768 0.88 -1.9 761,100 + Synpcc7942_0768 0.88 +1.1 761,120 - -0.1 761,120 - +2.2 761,136 + -0.1 761,136 + +3.3 761,136 + -0.1 761,144 - -1.5 761,173 + +0.9 761,173 + +0.2 761,181 - -1.9 761,181 - -2.6 761,210 + -0.3 761,215 - +0.2 761,238 - -0.1 761,256 + +0.2 761,340 - Synpcc7942_0769 0.13 -2.4 761,343 + Synpcc7942_0769 0.13 -1.1 761,361 - Synpcc7942_0769 0.15 +2.1 761,387 + Synpcc7942_0769 0.18 +0.9 761,387 + Synpcc7942_0769 0.18 -0.9 761,395 - Synpcc7942_0769 0.19 +0.9 761,433 + Synpcc7942_0769 0.23 +0.1 761,433 + Synpcc7942_0769 0.23 +1.8 761,441 - Synpcc7942_0769 0.24 +3.1 761,469 - Synpcc7942_0769 0.27 -0.1 761,470 + Synpcc7942_0769 0.27 +0.9 761,478 - Synpcc7942_0769 0.28 +2.6 761,492 - Synpcc7942_0769 0.29 -0.7 761,506 - Synpcc7942_0769 0.31 +0.4 761,533 + Synpcc7942_0769 0.34 +0.3 761,548 + Synpcc7942_0769 0.36 -0.1 761,549 - Synpcc7942_0769 0.36 -0.9 761,553 + Synpcc7942_0769 0.36 +3.1 761,563 + Synpcc7942_0769 0.37 +1.1 761,563 - Synpcc7942_0769 0.37 -2.1 761,565 + Synpcc7942_0769 0.38 +0.9 761,565 + Synpcc7942_0769 0.38 +0.5 761,602 - Synpcc7942_0769 0.42 +0.3 761,624 - Synpcc7942_0769 0.44 -1.0 761,641 - Synpcc7942_0769 0.46 +4.0 761,644 + Synpcc7942_0769 0.46 -0.8 761,657 + Synpcc7942_0769 0.48 +0.9 761,664 - Synpcc7942_0769 0.49 -0.7 761,669 + Synpcc7942_0769 0.49 +0.1 761,676 - Synpcc7942_0769 0.50 +0.7 761,753 + Synpcc7942_0769 0.58 -0.7 761,761 - Synpcc7942_0769 0.59 +0.1 761,761 - Synpcc7942_0769 0.59 -1.4 761,763 + Synpcc7942_0769 0.59 -1.4 761,768 + Synpcc7942_0769 0.60 -1.3 761,855 + Synpcc7942_0769 0.70 +2.1 761,855 + Synpcc7942_0769 0.70 -0.1 761,855 + Synpcc7942_0769 0.70 +0.9 761,933 - Synpcc7942_0769 0.78 -1.7 761,954 + Synpcc7942_0769 0.81 +0.9 761,962 - Synpcc7942_0769 0.82 +3.7 762,011 - Synpcc7942_0769 0.87 +0.9 762,044 + -0.1 762,052 - +1.3 762,054 - -0.2 762,073 + +1.5 762,105 + -2.7 762,113 + -1.1 762,142 + +0.3 762,149 + -1.4 762,150 - -0.1 762,157 - +1.7 762,170 - +0.3 762,187 + +2.7 762,192 + +0.9 762,193 + +0.8 762,193 + -0.5 762,195 - +1.7 762,203 + -0.1 762,208 + +0.0 762,238 - +0.3 762,254 + -0.5 762,277 + -0.1 762,285 - +0.5 762,285 - +0.9 762,285 - +0.8 762,314 + Synpcc7942_0770 0.10 +2.2 762,314 + +4.2 762,335 + Synpcc7942_0770 0.12 -1.0 762,343 - Synpcc7942_0770 0.12 +1.5 762,364 - Synpcc7942_0770 0.14 -0.9 762,391 - +0.9 762,391 - Synpcc7942_0770 0.16 -0.1 762,391 - Synpcc7942_0770 0.16 +1.2 762,396 + Synpcc7942_0770 0.16 -1.4 762,398 + Synpcc7942_0770 0.16 -1.7 762,404 - Synpcc7942_0770 0.16 -0.8 762,404 - Synpcc7942_0770 0.16 -1.1 762,404 - Synpcc7942_0770 0.16 -0.3 762,408 + Synpcc7942_0770 0.17 +0.9 762,421 - Synpcc7942_0770 0.18 -0.1 762,421 - Synpcc7942_0770 0.18 -1.3 762,433 - Synpcc7942_0770 0.18 +3.1 762,468 + Synpcc7942_0770 0.21 -1.1 762,468 + Synpcc7942_0770 0.21 -0.2 762,473 + Synpcc7942_0770 0.21 +1.2 762,476 - Synpcc7942_0770 0.21 +0.3 762,484 + Synpcc7942_0770 0.22 -0.7 762,548 - Synpcc7942_0770 0.26 +1.7 762,565 - Synpcc7942_0770 0.27 +2.3 762,587 - Synpcc7942_0770 0.29 +1.7 762,592 - Synpcc7942_0770 0.29 -1.1 762,711 + Synpcc7942_0770 0.37 -0.7 762,711 + +0.3 762,719 - Synpcc7942_0770 0.38 +2.0 762,719 - Synpcc7942_0770 0.38 -0.6 762,734 + Synpcc7942_0770 0.39 -0.1 762,742 - Synpcc7942_0770 0.39 +0.4 762,742 - Synpcc7942_0770 0.39 -1.1 762,762 - Synpcc7942_0770 0.41 +0.4 762,778 - Synpcc7942_0770 0.42 -1.7 762,778 - Synpcc7942_0770 0.42 +1.5 762,893 + Synpcc7942_0770 0.49 -2.1 762,908 + Synpcc7942_0770 0.50 -1.7 762,908 - Synpcc7942_0770 0.50 +0.9 762,913 + Synpcc7942_0770 0.51 -1.4 762,915 + Synpcc7942_0770 0.51 -1.1 762,920 + Synpcc7942_0770 0.51 +0.8 762,920 + Synpcc7942_0770 0.51 +1.5 762,920 + Synpcc7942_0770 0.51 -0.9 762,928 - Synpcc7942_0770 0.52 +0.9 762,954 - Synpcc7942_0770 0.54 -1.1 762,966 + Synpcc7942_0770 0.54 -2.8 762,966 + Synpcc7942_0770 0.54 -0.4 762,974 - Synpcc7942_0770 0.55 -2.7 762,974 - Synpcc7942_0770 0.55 -1.3 762,990 + Synpcc7942_0770 0.56 -1.2 762,998 - Synpcc7942_0770 0.56 +0.2 763,067 - Synpcc7942_0770 0.61 -0.4 763,105 + Synpcc7942_0770 0.64 +0.9 763,105 + Synpcc7942_0770 0.64 +1.6 763,105 + Synpcc7942_0770 0.64 +0.9 763,112 - +0.9 763,113 - Synpcc7942_0770 0.64 -0.1 763,113 - Synpcc7942_0770 0.64 +1.7 763,113 - Synpcc7942_0770 0.64 -2.9
Or see this region's nucleotide sequence