Experiment: Ceftazidime 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rpoD3 and mutT overlap by 1 nucleotides mutT and hemF are separated by 415 nucleotides
Synpcc7942_0672: rpoD3 - RNA polymerase sigma factor SigD, at 666,887 to 667,849
rpoD3
Synpcc7942_0673: mutT - A/G-specific DNA-adenine glycosylase, at 667,849 to 668,931
mutT
Synpcc7942_0674: hemF - coproporphyrinogen III oxidase, at 669,347 to 670,300
hemF
Position (kb) 667
668
669 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 666.872 kb on + strand at 666.910 kb on + strand at 666.920 kb on + strand at 666.924 kb on + strand at 666.924 kb on + strand at 666.924 kb on + strand at 666.956 kb on + strand at 666.964 kb on - strand at 666.971 kb on + strand at 666.993 kb on + strand, within rpoD3 at 667.000 kb on + strand, within rpoD3 at 667.038 kb on + strand, within rpoD3 at 667.046 kb on - strand, within rpoD3 at 667.046 kb on - strand, within rpoD3 at 667.046 kb on - strand, within rpoD3 at 667.072 kb on + strand, within rpoD3 at 667.106 kb on + strand, within rpoD3 at 667.115 kb on + strand, within rpoD3 at 667.123 kb on + strand, within rpoD3 at 667.178 kb on - strand, within rpoD3 at 667.245 kb on + strand, within rpoD3 at 667.253 kb on - strand, within rpoD3 at 667.370 kb on - strand at 667.385 kb on + strand, within rpoD3 at 667.479 kb on + strand, within rpoD3 at 667.485 kb on + strand, within rpoD3 at 667.485 kb on + strand, within rpoD3 at 667.485 kb on - strand, within rpoD3 at 667.488 kb on + strand, within rpoD3 at 667.493 kb on - strand, within rpoD3 at 667.704 kb on + strand, within rpoD3 at 667.704 kb on + strand, within rpoD3 at 667.704 kb on + strand, within rpoD3 at 667.704 kb on - strand, within rpoD3 at 667.704 kb on - strand, within rpoD3 at 667.706 kb on + strand, within rpoD3 at 667.712 kb on - strand, within rpoD3 at 667.721 kb on + strand, within rpoD3 at 667.729 kb on - strand, within rpoD3 at 667.729 kb on - strand, within rpoD3 at 667.772 kb on - strand at 667.797 kb on + strand at 667.803 kb on - strand at 667.805 kb on - strand at 667.805 kb on - strand at 667.805 kb on - strand at 667.868 kb on + strand at 667.868 kb on + strand at 667.868 kb on + strand at 667.868 kb on + strand at 667.876 kb on - strand at 667.876 kb on - strand at 667.876 kb on - strand at 667.888 kb on + strand at 667.893 kb on + strand at 667.906 kb on + strand at 667.921 kb on - strand at 667.923 kb on + strand at 667.944 kb on + strand at 667.944 kb on + strand at 667.952 kb on - strand at 667.952 kb on - strand at 667.967 kb on + strand, within mutT at 668.016 kb on + strand, within mutT at 668.016 kb on + strand, within mutT at 668.024 kb on - strand, within mutT at 668.024 kb on - strand, within mutT at 668.039 kb on + strand, within mutT at 668.039 kb on + strand, within mutT at 668.047 kb on - strand, within mutT at 668.047 kb on - strand, within mutT at 668.049 kb on - strand, within mutT at 668.055 kb on - strand, within mutT at 668.062 kb on + strand, within mutT at 668.084 kb on - strand, within mutT at 668.092 kb on + strand, within mutT at 668.092 kb on + strand, within mutT at 668.092 kb on + strand, within mutT at 668.110 kb on - strand, within mutT at 668.111 kb on - strand, within mutT at 668.118 kb on + strand, within mutT at 668.119 kb on + strand, within mutT at 668.142 kb on - strand, within mutT at 668.150 kb on - strand, within mutT at 668.163 kb on - strand, within mutT at 668.207 kb on - strand, within mutT at 668.217 kb on - strand, within mutT at 668.219 kb on - strand, within mutT at 668.250 kb on - strand, within mutT at 668.305 kb on + strand, within mutT at 668.313 kb on - strand, within mutT at 668.340 kb on + strand, within mutT at 668.351 kb on + strand, within mutT at 668.351 kb on + strand, within mutT at 668.359 kb on - strand, within mutT at 668.359 kb on - strand, within mutT at 668.364 kb on + strand, within mutT at 668.369 kb on + strand, within mutT at 668.382 kb on - strand, within mutT at 668.387 kb on + strand, within mutT at 668.401 kb on + strand, within mutT at 668.405 kb on - strand, within mutT at 668.409 kb on - strand, within mutT at 668.433 kb on + strand, within mutT at 668.441 kb on - strand at 668.441 kb on - strand, within mutT at 668.441 kb on - strand, within mutT at 668.443 kb on - strand, within mutT at 668.487 kb on - strand, within mutT at 668.496 kb on - strand, within mutT at 668.517 kb on - strand, within mutT at 668.536 kb on - strand, within mutT at 668.591 kb on - strand, within mutT at 668.649 kb on + strand, within mutT at 668.666 kb on + strand, within mutT at 668.667 kb on - strand, within mutT at 668.761 kb on - strand, within mutT at 668.910 kb on + strand at 669.114 kb on - strand at 669.116 kb on + strand at 669.116 kb on + strand at 669.116 kb on + strand at 669.276 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.125 mg/ml remove 666,872 + +0.4 666,910 + +0.9 666,920 + +0.7 666,924 + +0.2 666,924 + -1.4 666,924 + -1.8 666,956 + +0.5 666,964 - -0.1 666,971 + +1.3 666,993 + rpoD3 Synpcc7942_0672 0.11 -1.9 667,000 + rpoD3 Synpcc7942_0672 0.12 -2.5 667,038 + rpoD3 Synpcc7942_0672 0.16 +1.0 667,046 - rpoD3 Synpcc7942_0672 0.17 +1.3 667,046 - rpoD3 Synpcc7942_0672 0.17 -0.7 667,046 - rpoD3 Synpcc7942_0672 0.17 +0.1 667,072 + rpoD3 Synpcc7942_0672 0.19 -0.5 667,106 + rpoD3 Synpcc7942_0672 0.23 +0.7 667,115 + rpoD3 Synpcc7942_0672 0.24 -0.1 667,123 + rpoD3 Synpcc7942_0672 0.25 +1.2 667,178 - rpoD3 Synpcc7942_0672 0.30 -0.1 667,245 + rpoD3 Synpcc7942_0672 0.37 +0.1 667,253 - rpoD3 Synpcc7942_0672 0.38 +2.5 667,370 - +2.5 667,385 + rpoD3 Synpcc7942_0672 0.52 -0.1 667,479 + rpoD3 Synpcc7942_0672 0.61 -1.1 667,485 + rpoD3 Synpcc7942_0672 0.62 +2.3 667,485 + rpoD3 Synpcc7942_0672 0.62 +1.6 667,485 - rpoD3 Synpcc7942_0672 0.62 -1.4 667,488 + rpoD3 Synpcc7942_0672 0.62 +0.5 667,493 - rpoD3 Synpcc7942_0672 0.63 -0.7 667,704 + rpoD3 Synpcc7942_0672 0.85 +2.3 667,704 + rpoD3 Synpcc7942_0672 0.85 +1.8 667,704 + rpoD3 Synpcc7942_0672 0.85 +1.1 667,704 - rpoD3 Synpcc7942_0672 0.85 +1.2 667,704 - rpoD3 Synpcc7942_0672 0.85 -1.7 667,706 + rpoD3 Synpcc7942_0672 0.85 +0.5 667,712 - rpoD3 Synpcc7942_0672 0.86 -0.1 667,721 + rpoD3 Synpcc7942_0672 0.87 -0.7 667,729 - rpoD3 Synpcc7942_0672 0.87 -1.9 667,729 - rpoD3 Synpcc7942_0672 0.87 -2.0 667,772 - -1.1 667,797 + -2.9 667,803 - +1.4 667,805 - +0.9 667,805 - +2.3 667,805 - -0.1 667,868 + -0.4 667,868 + +0.9 667,868 + -0.1 667,868 + +2.8 667,876 - -0.1 667,876 - -1.7 667,876 - -1.9 667,888 + +2.2 667,893 + +1.4 667,906 + -1.7 667,921 - +0.3 667,923 + -1.4 667,944 + +0.9 667,944 + +0.0 667,952 - -1.1 667,952 - +2.3 667,967 + mutT Synpcc7942_0673 0.11 -1.7 668,016 + mutT Synpcc7942_0673 0.15 -0.7 668,016 + mutT Synpcc7942_0673 0.15 +0.2 668,024 - mutT Synpcc7942_0673 0.16 +1.7 668,024 - mutT Synpcc7942_0673 0.16 -0.1 668,039 + mutT Synpcc7942_0673 0.18 +4.2 668,039 + mutT Synpcc7942_0673 0.18 +1.9 668,047 - mutT Synpcc7942_0673 0.18 -1.4 668,047 - mutT Synpcc7942_0673 0.18 -3.5 668,049 - mutT Synpcc7942_0673 0.18 -0.2 668,055 - mutT Synpcc7942_0673 0.19 -0.9 668,062 + mutT Synpcc7942_0673 0.20 -1.7 668,084 - mutT Synpcc7942_0673 0.22 -0.8 668,092 + mutT Synpcc7942_0673 0.22 +0.9 668,092 + mutT Synpcc7942_0673 0.22 -0.1 668,092 + mutT Synpcc7942_0673 0.22 +0.9 668,110 - mutT Synpcc7942_0673 0.24 -0.1 668,111 - mutT Synpcc7942_0673 0.24 -3.7 668,118 + mutT Synpcc7942_0673 0.25 +1.9 668,119 + mutT Synpcc7942_0673 0.25 +1.9 668,142 - mutT Synpcc7942_0673 0.27 +0.3 668,150 - mutT Synpcc7942_0673 0.28 -0.4 668,163 - mutT Synpcc7942_0673 0.29 +0.3 668,207 - mutT Synpcc7942_0673 0.33 -2.1 668,217 - mutT Synpcc7942_0673 0.34 -0.4 668,219 - mutT Synpcc7942_0673 0.34 -1.4 668,250 - mutT Synpcc7942_0673 0.37 +2.0 668,305 + mutT Synpcc7942_0673 0.42 +0.3 668,313 - mutT Synpcc7942_0673 0.43 -2.3 668,340 + mutT Synpcc7942_0673 0.45 -0.1 668,351 + mutT Synpcc7942_0673 0.46 -2.8 668,351 + mutT Synpcc7942_0673 0.46 -0.7 668,359 - mutT Synpcc7942_0673 0.47 +0.3 668,359 - mutT Synpcc7942_0673 0.47 -0.7 668,364 + mutT Synpcc7942_0673 0.48 +0.9 668,369 + mutT Synpcc7942_0673 0.48 +0.3 668,382 - mutT Synpcc7942_0673 0.49 -0.7 668,387 + mutT Synpcc7942_0673 0.50 +1.0 668,401 + mutT Synpcc7942_0673 0.51 -3.1 668,405 - mutT Synpcc7942_0673 0.51 +0.1 668,409 - mutT Synpcc7942_0673 0.52 +0.0 668,433 + mutT Synpcc7942_0673 0.54 -0.7 668,441 - -0.1 668,441 - mutT Synpcc7942_0673 0.55 -0.3 668,441 - mutT Synpcc7942_0673 0.55 -0.9 668,443 - mutT Synpcc7942_0673 0.55 +0.3 668,487 - mutT Synpcc7942_0673 0.59 -0.6 668,496 - mutT Synpcc7942_0673 0.60 -0.4 668,517 - mutT Synpcc7942_0673 0.62 -0.7 668,536 - mutT Synpcc7942_0673 0.63 -1.4 668,591 - mutT Synpcc7942_0673 0.69 -1.5 668,649 + mutT Synpcc7942_0673 0.74 +0.9 668,666 + mutT Synpcc7942_0673 0.75 +1.2 668,667 - mutT Synpcc7942_0673 0.76 -0.1 668,761 - mutT Synpcc7942_0673 0.84 +0.9 668,910 + -0.8 669,114 - +1.6 669,116 + +0.9 669,116 + -1.1 669,116 + -1.1 669,276 - +0.9
Or see this region's nucleotide sequence