Experiment: Ceftazidime 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lacG and Synpcc7942_0472 are separated by 82 nucleotides Synpcc7942_0472 and Synpcc7942_0473 are separated by 76 nucleotides
Synpcc7942_0471: lacG - ABC-type sugar transport system permease component-like, at 457,882 to 458,712
lacG
Synpcc7942_0472: Synpcc7942_0472 - Exodeoxyribonuclease VII small subunit, at 458,795 to 459,019
_0472
Synpcc7942_0473: Synpcc7942_0473 - NADH:flavin oxidoreductase Old Yellow Enzyme family-like, at 459,096 to 460,202
_0473
Position (kb) 458
459
460 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 457.803 kb on - strand at 457.843 kb on + strand at 457.870 kb on + strand at 457.880 kb on - strand at 457.884 kb on + strand at 457.887 kb on - strand at 457.920 kb on - strand at 457.922 kb on - strand at 457.922 kb on - strand at 457.934 kb on + strand at 457.989 kb on - strand, within lacG at 457.989 kb on - strand, within lacG at 458.005 kb on - strand, within lacG at 458.086 kb on + strand, within lacG at 458.094 kb on - strand, within lacG at 458.124 kb on - strand, within lacG at 458.137 kb on + strand, within lacG at 458.145 kb on + strand, within lacG at 458.161 kb on + strand, within lacG at 458.169 kb on - strand, within lacG at 458.169 kb on - strand, within lacG at 458.254 kb on + strand, within lacG at 458.262 kb on + strand, within lacG at 458.264 kb on + strand, within lacG at 458.264 kb on + strand, within lacG at 458.274 kb on - strand, within lacG at 458.279 kb on + strand, within lacG at 458.279 kb on + strand, within lacG at 458.289 kb on + strand, within lacG at 458.294 kb on + strand, within lacG at 458.294 kb on + strand, within lacG at 458.297 kb on - strand, within lacG at 458.302 kb on - strand, within lacG at 458.424 kb on - strand, within lacG at 458.483 kb on - strand, within lacG at 458.490 kb on + strand, within lacG at 458.545 kb on + strand, within lacG at 458.550 kb on + strand, within lacG at 458.551 kb on + strand, within lacG at 458.551 kb on + strand, within lacG at 458.559 kb on - strand, within lacG at 458.572 kb on + strand, within lacG at 458.625 kb on - strand, within lacG at 458.626 kb on - strand, within lacG at 458.667 kb on + strand at 458.667 kb on + strand at 458.667 kb on + strand at 458.667 kb on + strand at 458.675 kb on - strand at 458.706 kb on - strand at 458.707 kb on + strand at 458.714 kb on - strand at 458.752 kb on + strand at 458.767 kb on + strand at 458.772 kb on + strand at 458.803 kb on + strand at 458.803 kb on + strand at 458.811 kb on - strand at 458.861 kb on + strand, within Synpcc7942_0472 at 458.871 kb on + strand, within Synpcc7942_0472 at 458.879 kb on - strand, within Synpcc7942_0472 at 458.881 kb on + strand, within Synpcc7942_0472 at 458.889 kb on - strand, within Synpcc7942_0472 at 458.889 kb on - strand, within Synpcc7942_0472 at 458.974 kb on - strand, within Synpcc7942_0472 at 459.033 kb on + strand at 459.086 kb on + strand at 459.094 kb on - strand at 459.094 kb on - strand at 459.126 kb on + strand at 459.126 kb on + strand at 459.139 kb on + strand at 459.162 kb on + strand at 459.171 kb on + strand at 459.203 kb on - strand at 459.217 kb on + strand, within Synpcc7942_0473 at 459.225 kb on - strand, within Synpcc7942_0473 at 459.245 kb on + strand, within Synpcc7942_0473 at 459.281 kb on + strand, within Synpcc7942_0473 at 459.294 kb on + strand, within Synpcc7942_0473 at 459.297 kb on - strand, within Synpcc7942_0473 at 459.302 kb on - strand, within Synpcc7942_0473 at 459.302 kb on - strand, within Synpcc7942_0473 at 459.302 kb on - strand, within Synpcc7942_0473 at 459.313 kb on + strand, within Synpcc7942_0473 at 459.313 kb on + strand, within Synpcc7942_0473 at 459.315 kb on - strand, within Synpcc7942_0473 at 459.328 kb on + strand, within Synpcc7942_0473 at 459.328 kb on + strand, within Synpcc7942_0473 at 459.330 kb on + strand, within Synpcc7942_0473 at 459.336 kb on - strand, within Synpcc7942_0473 at 459.345 kb on - strand, within Synpcc7942_0473 at 459.346 kb on - strand, within Synpcc7942_0473 at 459.346 kb on - strand, within Synpcc7942_0473 at 459.375 kb on - strand, within Synpcc7942_0473 at 459.401 kb on + strand, within Synpcc7942_0473 at 459.445 kb on + strand, within Synpcc7942_0473 at 459.448 kb on + strand, within Synpcc7942_0473 at 459.455 kb on + strand, within Synpcc7942_0473 at 459.470 kb on - strand, within Synpcc7942_0473 at 459.491 kb on + strand, within Synpcc7942_0473 at 459.492 kb on + strand at 459.500 kb on + strand, within Synpcc7942_0473 at 459.500 kb on + strand, within Synpcc7942_0473 at 459.505 kb on + strand, within Synpcc7942_0473 at 459.523 kb on - strand, within Synpcc7942_0473 at 459.524 kb on - strand, within Synpcc7942_0473 at 459.564 kb on + strand, within Synpcc7942_0473 at 459.564 kb on + strand, within Synpcc7942_0473 at 459.564 kb on + strand, within Synpcc7942_0473 at 459.564 kb on + strand, within Synpcc7942_0473 at 459.578 kb on - strand at 459.624 kb on - strand, within Synpcc7942_0473 at 459.624 kb on - strand, within Synpcc7942_0473 at 459.626 kb on - strand, within Synpcc7942_0473 at 459.626 kb on - strand, within Synpcc7942_0473 at 459.633 kb on + strand, within Synpcc7942_0473 at 459.665 kb on + strand, within Synpcc7942_0473 at 459.670 kb on + strand, within Synpcc7942_0473 at 459.670 kb on + strand, within Synpcc7942_0473 at 459.683 kb on - strand, within Synpcc7942_0473 at 459.689 kb on + strand, within Synpcc7942_0473 at 459.704 kb on - strand, within Synpcc7942_0473 at 459.735 kb on + strand, within Synpcc7942_0473 at 459.735 kb on + strand, within Synpcc7942_0473 at 459.744 kb on + strand, within Synpcc7942_0473 at 459.750 kb on - strand, within Synpcc7942_0473 at 459.754 kb on + strand, within Synpcc7942_0473 at 459.777 kb on + strand, within Synpcc7942_0473 at 459.777 kb on + strand, within Synpcc7942_0473 at 459.778 kb on + strand, within Synpcc7942_0473 at 459.778 kb on + strand, within Synpcc7942_0473 at 459.778 kb on + strand, within Synpcc7942_0473 at 459.785 kb on - strand, within Synpcc7942_0473 at 459.785 kb on - strand, within Synpcc7942_0473 at 459.792 kb on + strand, within Synpcc7942_0473 at 459.810 kb on + strand, within Synpcc7942_0473 at 459.811 kb on - strand, within Synpcc7942_0473 at 459.811 kb on - strand, within Synpcc7942_0473 at 459.834 kb on + strand, within Synpcc7942_0473 at 459.868 kb on - strand, within Synpcc7942_0473 at 459.916 kb on - strand, within Synpcc7942_0473 at 459.925 kb on + strand, within Synpcc7942_0473 at 459.933 kb on - strand, within Synpcc7942_0473 at 459.933 kb on - strand, within Synpcc7942_0473 at 459.941 kb on + strand, within Synpcc7942_0473 at 459.943 kb on + strand, within Synpcc7942_0473 at 459.951 kb on - strand, within Synpcc7942_0473 at 459.957 kb on - strand, within Synpcc7942_0473 at 459.959 kb on - strand, within Synpcc7942_0473 at 459.966 kb on + strand, within Synpcc7942_0473 at 459.974 kb on - strand, within Synpcc7942_0473 at 459.975 kb on + strand, within Synpcc7942_0473 at 459.976 kb on + strand, within Synpcc7942_0473 at 459.983 kb on - strand, within Synpcc7942_0473 at 459.996 kb on + strand, within Synpcc7942_0473 at 460.004 kb on - strand, within Synpcc7942_0473 at 460.004 kb on - strand, within Synpcc7942_0473 at 460.004 kb on - strand, within Synpcc7942_0473 at 460.004 kb on - strand, within Synpcc7942_0473
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.125 mg/ml remove 457,803 - -1.2 457,843 + -0.3 457,870 + -1.8 457,880 - +0.4 457,884 + -0.7 457,887 - -1.3 457,920 - +1.0 457,922 - +3.8 457,922 - -0.6 457,934 + -0.6 457,989 - lacG Synpcc7942_0471 0.13 -0.5 457,989 - lacG Synpcc7942_0471 0.13 +0.6 458,005 - lacG Synpcc7942_0471 0.15 -0.4 458,086 + lacG Synpcc7942_0471 0.25 -1.0 458,094 - lacG Synpcc7942_0471 0.26 +1.0 458,124 - lacG Synpcc7942_0471 0.29 -2.9 458,137 + lacG Synpcc7942_0471 0.31 -1.0 458,145 + lacG Synpcc7942_0471 0.32 +0.9 458,161 + lacG Synpcc7942_0471 0.34 +1.1 458,169 - lacG Synpcc7942_0471 0.35 -0.6 458,169 - lacG Synpcc7942_0471 0.35 -1.2 458,254 + lacG Synpcc7942_0471 0.45 -1.8 458,262 + lacG Synpcc7942_0471 0.46 -0.2 458,264 + lacG Synpcc7942_0471 0.46 -1.5 458,264 + lacG Synpcc7942_0471 0.46 +1.6 458,274 - lacG Synpcc7942_0471 0.47 -1.0 458,279 + lacG Synpcc7942_0471 0.48 +0.2 458,279 + lacG Synpcc7942_0471 0.48 -1.3 458,289 + lacG Synpcc7942_0471 0.49 +0.1 458,294 + lacG Synpcc7942_0471 0.50 +0.4 458,294 + lacG Synpcc7942_0471 0.50 -1.6 458,297 - lacG Synpcc7942_0471 0.50 +4.7 458,302 - lacG Synpcc7942_0471 0.51 +1.0 458,424 - lacG Synpcc7942_0471 0.65 +0.0 458,483 - lacG Synpcc7942_0471 0.72 -0.6 458,490 + lacG Synpcc7942_0471 0.73 +0.0 458,545 + lacG Synpcc7942_0471 0.80 -0.3 458,550 + lacG Synpcc7942_0471 0.80 +0.4 458,551 + lacG Synpcc7942_0471 0.81 -0.6 458,551 + lacG Synpcc7942_0471 0.81 +0.4 458,559 - lacG Synpcc7942_0471 0.81 +4.6 458,572 + lacG Synpcc7942_0471 0.83 +0.3 458,625 - lacG Synpcc7942_0471 0.89 +2.8 458,626 - lacG Synpcc7942_0471 0.90 +1.6 458,667 + -1.3 458,667 + -1.6 458,667 + -1.1 458,667 + +0.0 458,675 - +1.4 458,706 - +2.1 458,707 + +2.0 458,714 - -1.0 458,752 + +2.1 458,767 + +1.7 458,772 + +2.8 458,803 + +1.0 458,803 + +1.0 458,811 - -1.6 458,861 + Synpcc7942_0472 0.29 -2.8 458,871 + Synpcc7942_0472 0.34 -1.0 458,879 - Synpcc7942_0472 0.37 -0.3 458,881 + Synpcc7942_0472 0.38 -1.5 458,889 - Synpcc7942_0472 0.42 -1.0 458,889 - Synpcc7942_0472 0.42 +0.0 458,974 - Synpcc7942_0472 0.80 -1.7 459,033 + +0.8 459,086 + +0.1 459,094 - +2.9 459,094 - -1.3 459,126 + -1.8 459,126 + -3.0 459,139 + -0.4 459,162 + +0.6 459,171 + +1.9 459,203 - +0.9 459,217 + Synpcc7942_0473 0.11 +1.9 459,225 - Synpcc7942_0473 0.12 +0.0 459,245 + Synpcc7942_0473 0.13 +1.3 459,281 + Synpcc7942_0473 0.17 -1.8 459,294 + Synpcc7942_0473 0.18 +2.0 459,297 - Synpcc7942_0473 0.18 +0.0 459,302 - Synpcc7942_0473 0.19 +1.7 459,302 - Synpcc7942_0473 0.19 -0.2 459,302 - Synpcc7942_0473 0.19 +0.0 459,313 + Synpcc7942_0473 0.20 +0.7 459,313 + Synpcc7942_0473 0.20 -1.0 459,315 - Synpcc7942_0473 0.20 -0.3 459,328 + Synpcc7942_0473 0.21 -2.5 459,328 + Synpcc7942_0473 0.21 -1.3 459,330 + Synpcc7942_0473 0.21 -1.2 459,336 - Synpcc7942_0473 0.22 +3.0 459,345 - Synpcc7942_0473 0.22 +0.0 459,346 - Synpcc7942_0473 0.23 -0.3 459,346 - Synpcc7942_0473 0.23 +2.1 459,375 - Synpcc7942_0473 0.25 +2.0 459,401 + Synpcc7942_0473 0.28 -0.2 459,445 + Synpcc7942_0473 0.32 -0.4 459,448 + Synpcc7942_0473 0.32 -0.8 459,455 + Synpcc7942_0473 0.32 +1.1 459,470 - Synpcc7942_0473 0.34 -0.6 459,491 + Synpcc7942_0473 0.36 +1.0 459,492 + -0.6 459,500 + Synpcc7942_0473 0.36 +1.1 459,500 + Synpcc7942_0473 0.36 -0.6 459,505 + Synpcc7942_0473 0.37 -1.1 459,523 - Synpcc7942_0473 0.39 -0.1 459,524 - Synpcc7942_0473 0.39 +0.3 459,564 + Synpcc7942_0473 0.42 +0.8 459,564 + Synpcc7942_0473 0.42 -2.7 459,564 + Synpcc7942_0473 0.42 +2.6 459,564 + Synpcc7942_0473 0.42 +0.0 459,578 - +3.0 459,624 - Synpcc7942_0473 0.48 -1.3 459,624 - Synpcc7942_0473 0.48 -0.3 459,626 - Synpcc7942_0473 0.48 -1.0 459,626 - Synpcc7942_0473 0.48 +0.5 459,633 + Synpcc7942_0473 0.49 +0.0 459,665 + Synpcc7942_0473 0.51 -0.8 459,670 + Synpcc7942_0473 0.52 +1.0 459,670 + Synpcc7942_0473 0.52 -2.3 459,683 - Synpcc7942_0473 0.53 +0.5 459,689 + Synpcc7942_0473 0.54 -0.9 459,704 - Synpcc7942_0473 0.55 +1.0 459,735 + Synpcc7942_0473 0.58 +1.0 459,735 + Synpcc7942_0473 0.58 +2.3 459,744 + Synpcc7942_0473 0.59 -0.7 459,750 - Synpcc7942_0473 0.59 -0.2 459,754 + Synpcc7942_0473 0.59 -1.8 459,777 + Synpcc7942_0473 0.62 +2.1 459,777 + Synpcc7942_0473 0.62 -1.5 459,778 + Synpcc7942_0473 0.62 +0.5 459,778 + Synpcc7942_0473 0.62 +0.6 459,778 + Synpcc7942_0473 0.62 +1.0 459,785 - Synpcc7942_0473 0.62 +0.3 459,785 - Synpcc7942_0473 0.62 -1.4 459,792 + Synpcc7942_0473 0.63 +0.6 459,810 + Synpcc7942_0473 0.64 +2.5 459,811 - Synpcc7942_0473 0.65 +1.3 459,811 - Synpcc7942_0473 0.65 -1.8 459,834 + Synpcc7942_0473 0.67 +1.0 459,868 - Synpcc7942_0473 0.70 +2.2 459,916 - Synpcc7942_0473 0.74 -0.2 459,925 + Synpcc7942_0473 0.75 -0.8 459,933 - Synpcc7942_0473 0.76 -1.3 459,933 - Synpcc7942_0473 0.76 -0.9 459,941 + Synpcc7942_0473 0.76 -1.3 459,943 + Synpcc7942_0473 0.77 +0.3 459,951 - Synpcc7942_0473 0.77 -0.8 459,957 - Synpcc7942_0473 0.78 +0.0 459,959 - Synpcc7942_0473 0.78 +1.4 459,966 + Synpcc7942_0473 0.79 -0.5 459,974 - Synpcc7942_0473 0.79 +0.0 459,975 + Synpcc7942_0473 0.79 -0.6 459,976 + Synpcc7942_0473 0.79 +0.9 459,983 - Synpcc7942_0473 0.80 +0.4 459,996 + Synpcc7942_0473 0.81 +0.0 460,004 - Synpcc7942_0473 0.82 +2.0 460,004 - Synpcc7942_0473 0.82 +1.0 460,004 - Synpcc7942_0473 0.82 -0.6 460,004 - Synpcc7942_0473 0.82 -0.6
Or see this region's nucleotide sequence