Experiment: Ceftazidime 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0281 and glyA are separated by 22 nucleotides glyA and Synpcc7942_0283 are separated by 196 nucleotides
Synpcc7942_0281: Synpcc7942_0281 - probable glycosyltransferase, at 277,043 to 278,116
_0281
Synpcc7942_0282: glyA - serine hydroxymethyltransferase, at 278,139 to 279,422
glyA
Synpcc7942_0283: Synpcc7942_0283 - Dihydrouridine synthase TIM-barrel protein nifR3, at 279,619 to 280,623
_0283
Position (kb) 278
279
280 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 278.112 kb on + strand at 279.441 kb on + strand at 279.534 kb on + strand at 279.534 kb on + strand at 279.591 kb on + strand at 279.599 kb on - strand at 279.599 kb on - strand at 279.599 kb on - strand at 279.615 kb on + strand at 279.615 kb on + strand at 279.623 kb on - strand at 279.627 kb on + strand at 279.635 kb on - strand at 279.635 kb on - strand at 279.635 kb on - strand at 279.635 kb on - strand at 279.635 kb on - strand at 279.650 kb on + strand at 279.662 kb on + strand at 279.668 kb on - strand at 279.672 kb on + strand at 279.688 kb on - strand at 279.702 kb on + strand at 279.702 kb on + strand at 279.702 kb on + strand at 279.710 kb on - strand at 279.710 kb on - strand at 279.710 kb on - strand at 279.710 kb on - strand at 279.736 kb on + strand, within Synpcc7942_0283 at 279.736 kb on + strand, within Synpcc7942_0283 at 279.738 kb on - strand, within Synpcc7942_0283 at 279.754 kb on + strand, within Synpcc7942_0283 at 279.773 kb on + strand, within Synpcc7942_0283 at 279.781 kb on - strand, within Synpcc7942_0283 at 279.782 kb on + strand, within Synpcc7942_0283 at 279.790 kb on - strand, within Synpcc7942_0283 at 279.790 kb on - strand, within Synpcc7942_0283 at 279.803 kb on + strand, within Synpcc7942_0283 at 279.812 kb on + strand, within Synpcc7942_0283 at 279.831 kb on + strand, within Synpcc7942_0283 at 279.839 kb on - strand, within Synpcc7942_0283 at 279.868 kb on + strand, within Synpcc7942_0283 at 279.893 kb on + strand, within Synpcc7942_0283 at 279.927 kb on - strand, within Synpcc7942_0283 at 279.950 kb on - strand, within Synpcc7942_0283 at 279.971 kb on - strand, within Synpcc7942_0283 at 279.976 kb on + strand, within Synpcc7942_0283 at 280.013 kb on + strand, within Synpcc7942_0283 at 280.021 kb on - strand, within Synpcc7942_0283 at 280.023 kb on + strand, within Synpcc7942_0283 at 280.023 kb on + strand, within Synpcc7942_0283 at 280.023 kb on + strand, within Synpcc7942_0283 at 280.028 kb on + strand, within Synpcc7942_0283 at 280.031 kb on - strand, within Synpcc7942_0283 at 280.041 kb on - strand, within Synpcc7942_0283 at 280.043 kb on + strand, within Synpcc7942_0283 at 280.052 kb on + strand, within Synpcc7942_0283 at 280.052 kb on + strand, within Synpcc7942_0283 at 280.052 kb on + strand, within Synpcc7942_0283 at 280.060 kb on - strand, within Synpcc7942_0283 at 280.064 kb on - strand, within Synpcc7942_0283 at 280.075 kb on + strand, within Synpcc7942_0283 at 280.075 kb on + strand, within Synpcc7942_0283 at 280.075 kb on + strand, within Synpcc7942_0283 at 280.077 kb on + strand at 280.092 kb on + strand, within Synpcc7942_0283 at 280.114 kb on - strand, within Synpcc7942_0283 at 280.116 kb on + strand, within Synpcc7942_0283 at 280.125 kb on + strand, within Synpcc7942_0283 at 280.134 kb on - strand, within Synpcc7942_0283 at 280.134 kb on - strand, within Synpcc7942_0283 at 280.134 kb on - strand, within Synpcc7942_0283 at 280.159 kb on + strand, within Synpcc7942_0283 at 280.159 kb on + strand, within Synpcc7942_0283 at 280.168 kb on - strand, within Synpcc7942_0283 at 280.205 kb on - strand, within Synpcc7942_0283 at 280.216 kb on + strand, within Synpcc7942_0283 at 280.216 kb on + strand, within Synpcc7942_0283 at 280.229 kb on - strand, within Synpcc7942_0283 at 280.266 kb on + strand, within Synpcc7942_0283 at 280.271 kb on - strand, within Synpcc7942_0283 at 280.276 kb on - strand, within Synpcc7942_0283 at 280.283 kb on + strand, within Synpcc7942_0283 at 280.283 kb on + strand, within Synpcc7942_0283 at 280.291 kb on - strand, within Synpcc7942_0283 at 280.295 kb on - strand, within Synpcc7942_0283 at 280.296 kb on - strand, within Synpcc7942_0283 at 280.296 kb on - strand, within Synpcc7942_0283 at 280.342 kb on - strand, within Synpcc7942_0283 at 280.363 kb on + strand, within Synpcc7942_0283
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.125 mg/ml remove 278,112 + -1.2 279,441 + -4.4 279,534 + -1.0 279,534 + -0.6 279,591 + -1.2 279,599 - +1.1 279,599 - -0.2 279,599 - -0.1 279,615 + +1.0 279,615 + -0.9 279,623 - +0.0 279,627 + -2.2 279,635 - +0.2 279,635 - +0.0 279,635 - +0.0 279,635 - +2.0 279,635 - -1.4 279,650 + -2.8 279,662 + -1.5 279,668 - +1.0 279,672 + +0.0 279,688 - -1.3 279,702 + +1.5 279,702 + +0.7 279,702 + -0.3 279,710 - -1.0 279,710 - -0.6 279,710 - -2.7 279,710 - -0.3 279,736 + Synpcc7942_0283 0.12 +0.2 279,736 + Synpcc7942_0283 0.12 +0.2 279,738 - Synpcc7942_0283 0.12 -1.0 279,754 + Synpcc7942_0283 0.13 -0.7 279,773 + Synpcc7942_0283 0.15 -0.6 279,781 - Synpcc7942_0283 0.16 -0.1 279,782 + Synpcc7942_0283 0.16 +1.0 279,790 - Synpcc7942_0283 0.17 -0.4 279,790 - Synpcc7942_0283 0.17 -1.3 279,803 + Synpcc7942_0283 0.18 -1.3 279,812 + Synpcc7942_0283 0.19 -0.5 279,831 + Synpcc7942_0283 0.21 +2.2 279,839 - Synpcc7942_0283 0.22 +3.2 279,868 + Synpcc7942_0283 0.25 +1.0 279,893 + Synpcc7942_0283 0.27 +5.6 279,927 - Synpcc7942_0283 0.31 -0.8 279,950 - Synpcc7942_0283 0.33 +0.5 279,971 - Synpcc7942_0283 0.35 -1.0 279,976 + Synpcc7942_0283 0.36 -0.6 280,013 + Synpcc7942_0283 0.39 -0.9 280,021 - Synpcc7942_0283 0.40 -1.9 280,023 + Synpcc7942_0283 0.40 -0.3 280,023 + Synpcc7942_0283 0.40 -1.3 280,023 + Synpcc7942_0283 0.40 +0.8 280,028 + Synpcc7942_0283 0.41 -1.3 280,031 - Synpcc7942_0283 0.41 -1.3 280,041 - Synpcc7942_0283 0.42 +1.0 280,043 + Synpcc7942_0283 0.42 +0.6 280,052 + Synpcc7942_0283 0.43 -0.4 280,052 + Synpcc7942_0283 0.43 -1.3 280,052 + Synpcc7942_0283 0.43 -1.3 280,060 - Synpcc7942_0283 0.44 -1.2 280,064 - Synpcc7942_0283 0.44 +1.0 280,075 + Synpcc7942_0283 0.45 -1.3 280,075 + Synpcc7942_0283 0.45 +1.5 280,075 + Synpcc7942_0283 0.45 -1.3 280,077 + +1.0 280,092 + Synpcc7942_0283 0.47 -2.8 280,114 - Synpcc7942_0283 0.49 +0.0 280,116 + Synpcc7942_0283 0.49 +0.0 280,125 + Synpcc7942_0283 0.50 -1.0 280,134 - Synpcc7942_0283 0.51 -0.3 280,134 - Synpcc7942_0283 0.51 +0.3 280,134 - Synpcc7942_0283 0.51 -0.5 280,159 + Synpcc7942_0283 0.54 -0.7 280,159 + Synpcc7942_0283 0.54 -0.3 280,168 - Synpcc7942_0283 0.55 +0.0 280,205 - Synpcc7942_0283 0.58 -2.2 280,216 + Synpcc7942_0283 0.59 +2.6 280,216 + Synpcc7942_0283 0.59 -0.8 280,229 - Synpcc7942_0283 0.61 +0.4 280,266 + Synpcc7942_0283 0.64 +0.6 280,271 - Synpcc7942_0283 0.65 +2.5 280,276 - Synpcc7942_0283 0.65 -1.0 280,283 + Synpcc7942_0283 0.66 -1.0 280,283 + Synpcc7942_0283 0.66 -0.4 280,291 - Synpcc7942_0283 0.67 -0.2 280,295 - Synpcc7942_0283 0.67 +0.0 280,296 - Synpcc7942_0283 0.67 +1.6 280,296 - Synpcc7942_0283 0.67 +0.0 280,342 - Synpcc7942_0283 0.72 +0.8 280,363 + Synpcc7942_0283 0.74 -0.2
Or see this region's nucleotide sequence