Experiment: Ceftazidime 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glcD and ligA are separated by 19 nucleotides ligA and hoxE are separated by 124 nucleotides hoxE and hoxF overlap by 1 nucleotides
Synpcc7942_0276: glcD - glycolate oxidase subunit GlcD, at 270,001 to 271,473
glcD
Synpcc7942_0277: ligA - NAD-dependent DNA ligase LigA, at 271,493 to 273,532
ligA
Synpcc7942_0278: hoxE - bidirectional hydrogenase complex protein HoxE, at 273,657 to 274,154
hoxE
Synpcc7942_0279: hoxF - NADH dehydrogenase (quinone), at 274,154 to 275,758
hoxF
Position (kb) 271
272
273
274 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 270.497 kb on - strand, within glcD at 270.598 kb on + strand, within glcD at 270.598 kb on + strand, within glcD at 270.701 kb on - strand, within glcD at 270.701 kb on - strand, within glcD at 270.730 kb on + strand, within glcD at 270.738 kb on - strand, within glcD at 270.753 kb on + strand, within glcD at 270.854 kb on - strand, within glcD at 270.881 kb on - strand, within glcD at 270.881 kb on - strand, within glcD at 270.881 kb on - strand, within glcD at 270.881 kb on - strand, within glcD at 270.881 kb on - strand, within glcD at 270.891 kb on - strand, within glcD at 270.897 kb on - strand, within glcD at 270.931 kb on - strand, within glcD at 270.941 kb on - strand, within glcD at 270.953 kb on - strand, within glcD at 270.982 kb on + strand, within glcD at 270.988 kb on - strand, within glcD at 271.032 kb on + strand, within glcD at 271.218 kb on + strand, within glcD at 271.342 kb on - strand at 271.344 kb on + strand at 271.352 kb on - strand at 271.352 kb on - strand at 271.399 kb on + strand at 271.399 kb on + strand at 271.407 kb on - strand at 271.407 kb on - strand at 271.457 kb on + strand at 271.474 kb on + strand at 271.493 kb on + strand at 271.498 kb on + strand at 271.509 kb on - strand at 273.533 kb on + strand at 273.536 kb on - strand at 273.557 kb on - strand at 273.622 kb on + strand at 273.622 kb on + strand at 273.623 kb on - strand at 273.628 kb on - strand at 273.641 kb on - strand at 273.644 kb on - strand at 273.648 kb on + strand at 273.656 kb on - strand at 273.656 kb on - strand at 273.656 kb on - strand at 273.677 kb on + strand at 273.682 kb on + strand at 273.725 kb on - strand, within hoxE at 273.747 kb on - strand, within hoxE at 273.776 kb on + strand, within hoxE at 273.777 kb on + strand, within hoxE at 273.777 kb on + strand, within hoxE at 273.784 kb on - strand, within hoxE at 273.784 kb on - strand, within hoxE at 273.790 kb on - strand, within hoxE at 273.811 kb on + strand, within hoxE at 273.828 kb on + strand, within hoxE at 273.853 kb on - strand, within hoxE at 273.853 kb on - strand, within hoxE at 273.862 kb on + strand, within hoxE at 273.865 kb on + strand, within hoxE at 273.873 kb on - strand, within hoxE at 273.875 kb on + strand, within hoxE at 273.883 kb on - strand, within hoxE at 273.964 kb on + strand, within hoxE at 273.972 kb on - strand, within hoxE at 273.975 kb on + strand, within hoxE at 273.993 kb on + strand, within hoxE at 274.001 kb on - strand, within hoxE at 274.002 kb on + strand, within hoxE at 274.010 kb on - strand, within hoxE at 274.022 kb on + strand, within hoxE at 274.022 kb on + strand, within hoxE at 274.029 kb on + strand, within hoxE at 274.035 kb on - strand, within hoxE at 274.037 kb on + strand, within hoxE at 274.037 kb on - strand, within hoxE at 274.039 kb on + strand at 274.039 kb on + strand, within hoxE at 274.039 kb on + strand, within hoxE at 274.039 kb on + strand, within hoxE at 274.039 kb on + strand, within hoxE at 274.039 kb on + strand, within hoxE at 274.039 kb on + strand, within hoxE at 274.041 kb on + strand, within hoxE at 274.045 kb on - strand, within hoxE at 274.047 kb on - strand, within hoxE at 274.047 kb on - strand, within hoxE at 274.047 kb on - strand, within hoxE at 274.081 kb on - strand, within hoxE at 274.083 kb on - strand, within hoxE at 274.086 kb on + strand, within hoxE at 274.094 kb on - strand, within hoxE at 274.125 kb on - strand at 274.133 kb on - strand at 274.139 kb on + strand at 274.147 kb on - strand at 274.151 kb on + strand at 274.156 kb on + strand at 274.166 kb on + strand at 274.174 kb on - strand at 274.175 kb on + strand at 274.208 kb on - strand at 274.231 kb on + strand at 274.238 kb on + strand at 274.239 kb on - strand at 274.285 kb on - strand at 274.285 kb on - strand at 274.285 kb on - strand at 274.315 kb on + strand, within hoxF at 274.338 kb on + strand, within hoxF at 274.343 kb on + strand at 274.353 kb on - strand, within hoxF at 274.353 kb on - strand, within hoxF at 274.356 kb on - strand, within hoxF at 274.362 kb on + strand, within hoxF at 274.364 kb on + strand, within hoxF at 274.376 kb on + strand, within hoxF at 274.388 kb on + strand, within hoxF at 274.388 kb on + strand, within hoxF at 274.397 kb on + strand, within hoxF at 274.398 kb on - strand, within hoxF at 274.398 kb on - strand, within hoxF at 274.402 kb on + strand, within hoxF at 274.402 kb on + strand, within hoxF at 274.410 kb on - strand, within hoxF at 274.415 kb on - strand, within hoxF at 274.446 kb on - strand, within hoxF at 274.447 kb on - strand, within hoxF at 274.459 kb on - strand, within hoxF at 274.485 kb on - strand, within hoxF at 274.488 kb on + strand, within hoxF at 274.509 kb on - strand, within hoxF
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.125 mg/ml remove 270,497 - glcD Synpcc7942_0276 0.34 +2.5 270,598 + glcD Synpcc7942_0276 0.41 -2.6 270,598 + glcD Synpcc7942_0276 0.41 -0.2 270,701 - glcD Synpcc7942_0276 0.48 +2.2 270,701 - glcD Synpcc7942_0276 0.48 +4.5 270,730 + glcD Synpcc7942_0276 0.49 +0.0 270,738 - glcD Synpcc7942_0276 0.50 +0.4 270,753 + glcD Synpcc7942_0276 0.51 +1.2 270,854 - glcD Synpcc7942_0276 0.58 +2.0 270,881 - glcD Synpcc7942_0276 0.60 -0.6 270,881 - glcD Synpcc7942_0276 0.60 -1.3 270,881 - glcD Synpcc7942_0276 0.60 +1.0 270,881 - glcD Synpcc7942_0276 0.60 +2.9 270,881 - glcD Synpcc7942_0276 0.60 +3.3 270,891 - glcD Synpcc7942_0276 0.60 +0.5 270,897 - glcD Synpcc7942_0276 0.61 -1.6 270,931 - glcD Synpcc7942_0276 0.63 -0.5 270,941 - glcD Synpcc7942_0276 0.64 +0.3 270,953 - glcD Synpcc7942_0276 0.65 -1.6 270,982 + glcD Synpcc7942_0276 0.67 -1.6 270,988 - glcD Synpcc7942_0276 0.67 +0.6 271,032 + glcD Synpcc7942_0276 0.70 +0.0 271,218 + glcD Synpcc7942_0276 0.83 -0.6 271,342 - -1.3 271,344 + +1.0 271,352 - -1.3 271,352 - +1.0 271,399 + -2.0 271,399 + -1.0 271,407 - -1.3 271,407 - -1.0 271,457 + -0.5 271,474 + +2.9 271,493 + +0.0 271,498 + -1.8 271,509 - +1.0 273,533 + +1.7 273,536 - +1.0 273,557 - +0.4 273,622 + -0.3 273,622 + +0.4 273,623 - -1.3 273,628 - +1.3 273,641 - +1.0 273,644 - +2.9 273,648 + +0.5 273,656 - -1.0 273,656 - -1.3 273,656 - -0.7 273,677 + -0.6 273,682 + +1.4 273,725 - hoxE Synpcc7942_0278 0.14 -0.6 273,747 - hoxE Synpcc7942_0278 0.18 -0.6 273,776 + hoxE Synpcc7942_0278 0.24 +1.0 273,777 + hoxE Synpcc7942_0278 0.24 +0.6 273,777 + hoxE Synpcc7942_0278 0.24 +0.4 273,784 - hoxE Synpcc7942_0278 0.26 +0.0 273,784 - hoxE Synpcc7942_0278 0.26 +0.6 273,790 - hoxE Synpcc7942_0278 0.27 -0.6 273,811 + hoxE Synpcc7942_0278 0.31 +0.0 273,828 + hoxE Synpcc7942_0278 0.34 -1.8 273,853 - hoxE Synpcc7942_0278 0.39 -0.1 273,853 - hoxE Synpcc7942_0278 0.39 +2.2 273,862 + hoxE Synpcc7942_0278 0.41 -0.4 273,865 + hoxE Synpcc7942_0278 0.42 -0.3 273,873 - hoxE Synpcc7942_0278 0.43 +0.0 273,875 + hoxE Synpcc7942_0278 0.44 -1.2 273,883 - hoxE Synpcc7942_0278 0.45 -0.5 273,964 + hoxE Synpcc7942_0278 0.62 +1.2 273,972 - hoxE Synpcc7942_0278 0.63 -3.6 273,975 + hoxE Synpcc7942_0278 0.64 -0.6 273,993 + hoxE Synpcc7942_0278 0.67 +0.6 274,001 - hoxE Synpcc7942_0278 0.69 -1.7 274,002 + hoxE Synpcc7942_0278 0.69 +0.9 274,010 - hoxE Synpcc7942_0278 0.71 +0.5 274,022 + hoxE Synpcc7942_0278 0.73 -1.7 274,022 + hoxE Synpcc7942_0278 0.73 -1.5 274,029 + hoxE Synpcc7942_0278 0.75 -0.2 274,035 - hoxE Synpcc7942_0278 0.76 +2.3 274,037 + hoxE Synpcc7942_0278 0.76 -1.3 274,037 - hoxE Synpcc7942_0278 0.76 +0.3 274,039 + +1.0 274,039 + hoxE Synpcc7942_0278 0.77 +1.0 274,039 + hoxE Synpcc7942_0278 0.77 +0.7 274,039 + hoxE Synpcc7942_0278 0.77 -2.2 274,039 + hoxE Synpcc7942_0278 0.77 -0.3 274,039 + hoxE Synpcc7942_0278 0.77 +0.4 274,039 + hoxE Synpcc7942_0278 0.77 -1.6 274,041 + hoxE Synpcc7942_0278 0.77 -0.8 274,045 - hoxE Synpcc7942_0278 0.78 +0.3 274,047 - hoxE Synpcc7942_0278 0.78 +0.4 274,047 - hoxE Synpcc7942_0278 0.78 -0.2 274,047 - hoxE Synpcc7942_0278 0.78 +3.1 274,081 - hoxE Synpcc7942_0278 0.85 -1.6 274,083 - hoxE Synpcc7942_0278 0.86 +2.4 274,086 + hoxE Synpcc7942_0278 0.86 +0.0 274,094 - hoxE Synpcc7942_0278 0.88 -1.2 274,125 - +1.0 274,133 - +2.3 274,139 + -1.0 274,147 - -2.2 274,151 + -0.3 274,156 + +0.4 274,166 + -0.6 274,174 - -2.2 274,175 + +1.0 274,208 - -0.2 274,231 + -0.9 274,238 + +0.0 274,239 - +3.1 274,285 - +0.4 274,285 - -1.0 274,285 - -0.3 274,315 + hoxF Synpcc7942_0279 0.10 +1.9 274,338 + hoxF Synpcc7942_0279 0.11 +1.7 274,343 + +1.0 274,353 - hoxF Synpcc7942_0279 0.12 -0.2 274,353 - hoxF Synpcc7942_0279 0.12 -1.6 274,356 - hoxF Synpcc7942_0279 0.13 +1.0 274,362 + hoxF Synpcc7942_0279 0.13 +0.5 274,364 + hoxF Synpcc7942_0279 0.13 +0.3 274,376 + hoxF Synpcc7942_0279 0.14 -1.0 274,388 + hoxF Synpcc7942_0279 0.15 -1.3 274,388 + hoxF Synpcc7942_0279 0.15 -0.6 274,397 + hoxF Synpcc7942_0279 0.15 +0.0 274,398 - hoxF Synpcc7942_0279 0.15 -0.6 274,398 - hoxF Synpcc7942_0279 0.15 -1.6 274,402 + hoxF Synpcc7942_0279 0.15 +0.5 274,402 + hoxF Synpcc7942_0279 0.15 +1.9 274,410 - hoxF Synpcc7942_0279 0.16 +0.0 274,415 - hoxF Synpcc7942_0279 0.16 -0.8 274,446 - hoxF Synpcc7942_0279 0.18 +0.7 274,447 - hoxF Synpcc7942_0279 0.18 +1.0 274,459 - hoxF Synpcc7942_0279 0.19 +0.6 274,485 - hoxF Synpcc7942_0279 0.21 +0.3 274,488 + hoxF Synpcc7942_0279 0.21 +0.8 274,509 - hoxF Synpcc7942_0279 0.22 +0.5
Or see this region's nucleotide sequence