Experiment: Ceftazidime 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ycf60 and Synpcc7942_0193 are separated by 60 nucleotides Synpcc7942_0193 and polA are separated by 183 nucleotides polA and Synpcc7942_0195 are separated by 113 nucleotides Synpcc7942_0195 and Synpcc7942_0196 are separated by 35 nucleotides
Synpcc7942_0192: ycf60 - conserved hypothetical protein YCF60, at 191,710 to 192,186
ycf60
Synpcc7942_0193: Synpcc7942_0193 - hypothetical protein, at 192,247 to 192,471
_0193
Synpcc7942_0194: polA - DNA polymerase I, at 192,655 to 195,516
polA
Synpcc7942_0195: Synpcc7942_0195 - hypothetical protein, at 195,630 to 196,058
_0195
Synpcc7942_0196: Synpcc7942_0196 - Beta-carotene 15,15'-dioxygenase, at 196,094 to 197,575
_0196
Position (kb) 192
193
194
195
196 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 191.661 kb on + strand at 191.710 kb on + strand at 191.806 kb on - strand, within ycf60 at 191.818 kb on - strand, within ycf60 at 191.832 kb on - strand, within ycf60 at 191.859 kb on + strand, within ycf60 at 191.866 kb on + strand, within ycf60 at 191.866 kb on + strand, within ycf60 at 191.867 kb on - strand, within ycf60 at 191.874 kb on - strand, within ycf60 at 191.941 kb on - strand, within ycf60 at 192.062 kb on - strand, within ycf60 at 192.097 kb on + strand, within ycf60 at 192.098 kb on - strand, within ycf60 at 192.165 kb on + strand at 192.165 kb on + strand at 192.173 kb on - strand at 192.174 kb on - strand at 192.190 kb on - strand at 192.190 kb on - strand at 192.191 kb on + strand at 192.191 kb on + strand at 192.199 kb on - strand at 192.211 kb on - strand at 192.220 kb on + strand at 192.221 kb on - strand at 192.231 kb on + strand at 192.249 kb on + strand at 192.328 kb on + strand, within Synpcc7942_0193 at 192.328 kb on + strand, within Synpcc7942_0193 at 192.335 kb on - strand, within Synpcc7942_0193 at 192.336 kb on - strand, within Synpcc7942_0193 at 192.369 kb on + strand, within Synpcc7942_0193 at 192.377 kb on - strand, within Synpcc7942_0193 at 192.478 kb on + strand at 192.548 kb on + strand at 192.548 kb on + strand at 192.548 kb on + strand at 192.556 kb on - strand at 192.570 kb on - strand at 192.571 kb on - strand at 192.582 kb on + strand at 192.583 kb on - strand at 192.583 kb on - strand at 192.597 kb on + strand at 192.605 kb on - strand at 192.673 kb on + strand at 192.673 kb on + strand at 192.681 kb on - strand at 192.698 kb on - strand at 192.700 kb on - strand at 194.494 kb on - strand, within polA at 194.499 kb on + strand, within polA at 195.498 kb on - strand at 195.498 kb on - strand at 195.505 kb on + strand at 195.534 kb on - strand at 195.585 kb on - strand at 195.665 kb on - strand at 195.665 kb on - strand at 195.666 kb on - strand at 195.691 kb on - strand, within Synpcc7942_0195 at 195.705 kb on + strand, within Synpcc7942_0195 at 195.765 kb on + strand, within Synpcc7942_0195 at 195.765 kb on + strand, within Synpcc7942_0195 at 195.775 kb on + strand, within Synpcc7942_0195 at 195.775 kb on + strand, within Synpcc7942_0195 at 195.780 kb on + strand, within Synpcc7942_0195 at 195.785 kb on + strand, within Synpcc7942_0195 at 195.790 kb on + strand, within Synpcc7942_0195 at 195.790 kb on + strand, within Synpcc7942_0195 at 195.790 kb on + strand, within Synpcc7942_0195 at 195.793 kb on - strand, within Synpcc7942_0195 at 195.795 kb on + strand, within Synpcc7942_0195 at 195.795 kb on + strand, within Synpcc7942_0195 at 195.795 kb on + strand, within Synpcc7942_0195 at 195.803 kb on - strand, within Synpcc7942_0195 at 195.820 kb on + strand, within Synpcc7942_0195 at 195.855 kb on + strand, within Synpcc7942_0195 at 195.863 kb on - strand, within Synpcc7942_0195 at 195.887 kb on + strand, within Synpcc7942_0195 at 195.895 kb on - strand, within Synpcc7942_0195 at 195.898 kb on - strand, within Synpcc7942_0195 at 195.905 kb on + strand, within Synpcc7942_0195 at 195.913 kb on - strand, within Synpcc7942_0195 at 195.913 kb on - strand, within Synpcc7942_0195 at 195.947 kb on + strand, within Synpcc7942_0195 at 195.948 kb on - strand, within Synpcc7942_0195 at 195.975 kb on + strand, within Synpcc7942_0195 at 195.993 kb on - strand, within Synpcc7942_0195 at 195.993 kb on - strand, within Synpcc7942_0195 at 195.999 kb on + strand, within Synpcc7942_0195 at 196.018 kb on - strand at 196.023 kb on - strand at 196.078 kb on + strand at 196.115 kb on - strand at 196.140 kb on + strand at 196.144 kb on + strand at 196.146 kb on + strand at 196.180 kb on + strand at 196.187 kb on + strand at 196.188 kb on - strand at 196.195 kb on - strand at 196.201 kb on + strand at 196.202 kb on + strand at 196.208 kb on - strand at 196.208 kb on - strand at 196.210 kb on + strand at 196.210 kb on + strand at 196.210 kb on - strand at 196.212 kb on + strand at 196.217 kb on + strand at 196.218 kb on - strand at 196.218 kb on - strand at 196.329 kb on + strand, within Synpcc7942_0196 at 196.329 kb on + strand, within Synpcc7942_0196 at 196.329 kb on + strand, within Synpcc7942_0196 at 196.329 kb on - strand, within Synpcc7942_0196 at 196.337 kb on - strand, within Synpcc7942_0196 at 196.362 kb on + strand, within Synpcc7942_0196 at 196.362 kb on + strand, within Synpcc7942_0196 at 196.367 kb on - strand, within Synpcc7942_0196 at 196.381 kb on - strand, within Synpcc7942_0196 at 196.384 kb on + strand, within Synpcc7942_0196 at 196.399 kb on + strand, within Synpcc7942_0196 at 196.402 kb on - strand, within Synpcc7942_0196 at 196.421 kb on + strand, within Synpcc7942_0196 at 196.443 kb on + strand, within Synpcc7942_0196 at 196.446 kb on + strand, within Synpcc7942_0196 at 196.446 kb on - strand, within Synpcc7942_0196 at 196.446 kb on - strand, within Synpcc7942_0196 at 196.454 kb on - strand, within Synpcc7942_0196 at 196.493 kb on + strand, within Synpcc7942_0196 at 196.501 kb on - strand, within Synpcc7942_0196 at 196.503 kb on + strand, within Synpcc7942_0196 at 196.513 kb on + strand, within Synpcc7942_0196 at 196.513 kb on + strand, within Synpcc7942_0196 at 196.516 kb on - strand, within Synpcc7942_0196 at 196.516 kb on - strand, within Synpcc7942_0196
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.125 mg/ml remove 191,661 + +1.0 191,710 + +1.0 191,806 - ycf60 Synpcc7942_0192 0.20 -1.8 191,818 - ycf60 Synpcc7942_0192 0.23 +0.4 191,832 - ycf60 Synpcc7942_0192 0.26 -1.6 191,859 + ycf60 Synpcc7942_0192 0.31 -2.2 191,866 + ycf60 Synpcc7942_0192 0.33 -0.6 191,866 + ycf60 Synpcc7942_0192 0.33 -2.3 191,867 - ycf60 Synpcc7942_0192 0.33 -0.6 191,874 - ycf60 Synpcc7942_0192 0.34 +0.3 191,941 - ycf60 Synpcc7942_0192 0.48 +1.0 192,062 - ycf60 Synpcc7942_0192 0.74 -1.0 192,097 + ycf60 Synpcc7942_0192 0.81 -0.6 192,098 - ycf60 Synpcc7942_0192 0.81 -0.0 192,165 + -0.0 192,165 + -0.8 192,173 - +0.1 192,174 - -1.2 192,190 - +1.7 192,190 - -1.6 192,191 + -0.4 192,191 + -1.0 192,199 - -0.6 192,211 - -0.8 192,220 + -1.3 192,221 - -0.8 192,231 + -2.2 192,249 + -0.6 192,328 + Synpcc7942_0193 0.36 -0.6 192,328 + Synpcc7942_0193 0.36 +2.0 192,335 - Synpcc7942_0193 0.39 +0.4 192,336 - Synpcc7942_0193 0.40 +1.0 192,369 + Synpcc7942_0193 0.54 +0.2 192,377 - Synpcc7942_0193 0.58 +0.2 192,478 + -1.0 192,548 + +1.2 192,548 + -0.6 192,548 + -0.1 192,556 - -0.8 192,570 - +1.0 192,571 - -2.2 192,582 + -2.5 192,583 - +2.5 192,583 - -0.8 192,597 + -0.8 192,605 - +1.0 192,673 + +2.1 192,673 + -2.5 192,681 - -2.2 192,698 - +1.0 192,700 - -2.5 194,494 - polA Synpcc7942_0194 0.64 +1.0 194,499 + polA Synpcc7942_0194 0.64 -1.6 195,498 - -0.0 195,498 - -1.6 195,505 + +2.6 195,534 - -0.6 195,585 - +1.6 195,665 - +1.4 195,665 - -2.3 195,666 - +1.0 195,691 - Synpcc7942_0195 0.14 +0.3 195,705 + Synpcc7942_0195 0.17 -0.2 195,765 + Synpcc7942_0195 0.31 -1.3 195,765 + Synpcc7942_0195 0.31 -0.0 195,775 + Synpcc7942_0195 0.34 +2.2 195,775 + Synpcc7942_0195 0.34 -0.6 195,780 + Synpcc7942_0195 0.35 +0.6 195,785 + Synpcc7942_0195 0.36 -0.3 195,790 + Synpcc7942_0195 0.37 +1.2 195,790 + Synpcc7942_0195 0.37 +1.4 195,790 + Synpcc7942_0195 0.37 +1.0 195,793 - Synpcc7942_0195 0.38 -0.0 195,795 + Synpcc7942_0195 0.38 -0.9 195,795 + Synpcc7942_0195 0.38 -1.6 195,795 + Synpcc7942_0195 0.38 +0.3 195,803 - Synpcc7942_0195 0.40 -0.7 195,820 + Synpcc7942_0195 0.44 -2.0 195,855 + Synpcc7942_0195 0.52 -0.0 195,863 - Synpcc7942_0195 0.54 +0.2 195,887 + Synpcc7942_0195 0.60 -0.0 195,895 - Synpcc7942_0195 0.62 +1.0 195,898 - Synpcc7942_0195 0.62 -0.6 195,905 + Synpcc7942_0195 0.64 -0.6 195,913 - Synpcc7942_0195 0.66 +1.0 195,913 - Synpcc7942_0195 0.66 -3.0 195,947 + Synpcc7942_0195 0.74 +0.6 195,948 - Synpcc7942_0195 0.74 +0.2 195,975 + Synpcc7942_0195 0.80 -2.3 195,993 - Synpcc7942_0195 0.85 +1.3 195,993 - Synpcc7942_0195 0.85 -0.4 195,999 + Synpcc7942_0195 0.86 -1.0 196,018 - -1.7 196,023 - -1.6 196,078 + +0.6 196,115 - +0.1 196,140 + +0.4 196,144 + -1.8 196,146 + -0.7 196,180 + +2.0 196,187 + +1.0 196,188 - -2.2 196,195 - +1.5 196,201 + -0.6 196,202 + +3.0 196,208 - +0.6 196,208 - -0.6 196,210 + -1.4 196,210 + -0.2 196,210 - -0.4 196,212 + -0.1 196,217 + +1.4 196,218 - -0.3 196,218 - +2.2 196,329 + Synpcc7942_0196 0.16 +1.3 196,329 + Synpcc7942_0196 0.16 -0.6 196,329 + Synpcc7942_0196 0.16 +1.0 196,329 - Synpcc7942_0196 0.16 -0.1 196,337 - Synpcc7942_0196 0.16 -0.0 196,362 + Synpcc7942_0196 0.18 -2.1 196,362 + Synpcc7942_0196 0.18 +2.9 196,367 - Synpcc7942_0196 0.18 -0.0 196,381 - Synpcc7942_0196 0.19 -0.3 196,384 + Synpcc7942_0196 0.20 -0.0 196,399 + Synpcc7942_0196 0.21 -0.3 196,402 - Synpcc7942_0196 0.21 -1.2 196,421 + Synpcc7942_0196 0.22 -0.6 196,443 + Synpcc7942_0196 0.24 -0.0 196,446 + Synpcc7942_0196 0.24 +1.8 196,446 - Synpcc7942_0196 0.24 -0.0 196,446 - Synpcc7942_0196 0.24 -0.1 196,454 - Synpcc7942_0196 0.24 -0.1 196,493 + Synpcc7942_0196 0.27 -0.0 196,501 - Synpcc7942_0196 0.27 +0.6 196,503 + Synpcc7942_0196 0.28 -1.8 196,513 + Synpcc7942_0196 0.28 -0.0 196,513 + Synpcc7942_0196 0.28 +2.7 196,516 - Synpcc7942_0196 0.28 -1.1 196,516 - Synpcc7942_0196 0.28 +1.0
Or see this region's nucleotide sequence