Experiment: Ceftazidime 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0182 and Synpcc7942_0183 are separated by 196 nucleotides Synpcc7942_0183 and pit overlap by 4 nucleotides
Synpcc7942_0182: Synpcc7942_0182 - hypothetical protein, at 180,156 to 180,881
_0182
Synpcc7942_0183: Synpcc7942_0183 - hypothetical protein, at 181,078 to 181,467
_0183
Synpcc7942_0184: pit - putative phosphate permease, at 181,464 to 182,555
pit
Position (kb) 181
182 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 180.169 kb on + strand at 180.199 kb on + strand at 180.199 kb on + strand at 180.207 kb on - strand at 180.324 kb on + strand, within Synpcc7942_0182 at 180.332 kb on - strand, within Synpcc7942_0182 at 180.517 kb on - strand, within Synpcc7942_0182 at 180.527 kb on + strand, within Synpcc7942_0182 at 180.544 kb on + strand, within Synpcc7942_0182 at 180.562 kb on + strand, within Synpcc7942_0182 at 180.565 kb on - strand, within Synpcc7942_0182 at 180.651 kb on - strand, within Synpcc7942_0182 at 180.689 kb on + strand, within Synpcc7942_0182 at 180.689 kb on + strand, within Synpcc7942_0182 at 180.697 kb on - strand, within Synpcc7942_0182 at 180.697 kb on - strand, within Synpcc7942_0182 at 180.739 kb on + strand, within Synpcc7942_0182 at 180.745 kb on + strand, within Synpcc7942_0182 at 180.755 kb on + strand, within Synpcc7942_0182 at 180.755 kb on + strand, within Synpcc7942_0182 at 180.785 kb on - strand, within Synpcc7942_0182 at 180.791 kb on + strand, within Synpcc7942_0182 at 180.804 kb on - strand, within Synpcc7942_0182 at 180.869 kb on + strand at 180.874 kb on - strand at 180.877 kb on - strand at 180.879 kb on - strand at 180.879 kb on - strand at 180.879 kb on - strand at 180.938 kb on - strand at 181.062 kb on + strand at 181.078 kb on + strand at 181.093 kb on - strand at 181.147 kb on - strand, within Synpcc7942_0183 at 181.152 kb on - strand, within Synpcc7942_0183 at 181.181 kb on - strand, within Synpcc7942_0183 at 181.228 kb on + strand, within Synpcc7942_0183 at 181.236 kb on - strand, within Synpcc7942_0183 at 181.236 kb on - strand, within Synpcc7942_0183 at 181.241 kb on - strand, within Synpcc7942_0183 at 181.266 kb on + strand, within Synpcc7942_0183 at 181.266 kb on + strand, within Synpcc7942_0183 at 181.266 kb on + strand, within Synpcc7942_0183 at 181.274 kb on - strand, within Synpcc7942_0183 at 181.274 kb on - strand, within Synpcc7942_0183 at 181.274 kb on - strand, within Synpcc7942_0183 at 181.286 kb on + strand, within Synpcc7942_0183 at 181.286 kb on + strand, within Synpcc7942_0183 at 181.307 kb on + strand, within Synpcc7942_0183 at 181.321 kb on + strand, within Synpcc7942_0183 at 181.344 kb on - strand, within Synpcc7942_0183 at 181.357 kb on + strand, within Synpcc7942_0183 at 181.357 kb on + strand, within Synpcc7942_0183 at 181.357 kb on + strand, within Synpcc7942_0183 at 181.365 kb on - strand, within Synpcc7942_0183 at 181.381 kb on + strand, within Synpcc7942_0183 at 181.398 kb on - strand, within Synpcc7942_0183 at 181.417 kb on - strand, within Synpcc7942_0183 at 181.428 kb on + strand, within Synpcc7942_0183 at 181.428 kb on + strand, within Synpcc7942_0183 at 181.429 kb on - strand at 181.477 kb on + strand at 181.477 kb on + strand at 181.477 kb on + strand at 181.487 kb on + strand at 181.513 kb on + strand at 181.513 kb on + strand at 181.513 kb on + strand at 181.513 kb on + strand at 181.513 kb on + strand at 181.513 kb on + strand at 181.521 kb on - strand at 181.521 kb on - strand at 181.521 kb on - strand at 181.521 kb on - strand at 181.521 kb on - strand at 181.521 kb on - strand at 181.526 kb on + strand at 181.527 kb on - strand at 181.529 kb on - strand at 181.545 kb on - strand at 181.555 kb on - strand at 181.557 kb on + strand at 181.565 kb on - strand at 181.565 kb on - strand at 181.589 kb on + strand, within pit at 181.590 kb on + strand, within pit at 181.597 kb on + strand, within pit at 181.598 kb on - strand, within pit at 181.605 kb on - strand, within pit at 181.709 kb on + strand, within pit at 181.709 kb on + strand, within pit at 181.709 kb on + strand, within pit at 181.717 kb on - strand, within pit at 181.719 kb on + strand, within pit at 181.722 kb on - strand, within pit at 181.725 kb on + strand, within pit at 181.726 kb on + strand, within pit at 181.732 kb on - strand, within pit at 181.733 kb on - strand at 181.734 kb on - strand, within pit at 181.741 kb on - strand, within pit at 181.754 kb on + strand, within pit at 181.762 kb on - strand, within pit at 181.770 kb on + strand, within pit at 181.778 kb on - strand at 181.783 kb on - strand, within pit at 181.790 kb on + strand, within pit at 181.806 kb on - strand, within pit at 181.806 kb on - strand, within pit at 181.806 kb on - strand, within pit at 181.811 kb on - strand, within pit at 181.811 kb on - strand, within pit at 181.821 kb on - strand, within pit at 181.822 kb on + strand, within pit at 181.843 kb on - strand, within pit at 181.859 kb on + strand, within pit at 181.859 kb on + strand, within pit at 181.859 kb on + strand, within pit at 181.859 kb on + strand, within pit at 181.867 kb on - strand, within pit at 181.867 kb on - strand, within pit at 181.867 kb on - strand, within pit at 181.867 kb on - strand, within pit at 181.874 kb on + strand, within pit at 181.874 kb on + strand, within pit at 181.874 kb on + strand, within pit at 181.874 kb on + strand, within pit at 181.882 kb on - strand, within pit at 181.882 kb on - strand, within pit at 181.882 kb on - strand, within pit at 181.882 kb on - strand, within pit at 181.918 kb on + strand, within pit at 181.918 kb on + strand, within pit at 181.941 kb on + strand, within pit at 181.944 kb on + strand, within pit at 181.951 kb on + strand at 181.951 kb on + strand, within pit at 181.956 kb on + strand, within pit at 181.961 kb on + strand, within pit at 181.961 kb on + strand, within pit at 181.961 kb on + strand, within pit at 181.961 kb on + strand, within pit at 181.969 kb on - strand, within pit at 181.969 kb on - strand, within pit at 181.969 kb on - strand, within pit at 181.969 kb on - strand, within pit at 181.969 kb on - strand, within pit at 181.981 kb on - strand, within pit at 182.004 kb on + strand, within pit at 182.004 kb on + strand, within pit at 182.004 kb on + strand, within pit at 182.013 kb on - strand, within pit at 182.016 kb on + strand, within pit at 182.037 kb on + strand, within pit at 182.042 kb on + strand, within pit at 182.045 kb on - strand, within pit at 182.050 kb on - strand, within pit at 182.055 kb on - strand, within pit at 182.060 kb on - strand, within pit at 182.064 kb on - strand, within pit at 182.088 kb on + strand, within pit at 182.089 kb on + strand, within pit at 182.109 kb on - strand, within pit at 182.120 kb on + strand, within pit at 182.122 kb on + strand, within pit at 182.135 kb on + strand, within pit at 182.154 kb on + strand, within pit at 182.154 kb on + strand, within pit at 182.154 kb on + strand, within pit at 182.162 kb on - strand, within pit at 182.168 kb on + strand, within pit at 182.168 kb on + strand at 182.176 kb on - strand, within pit at 182.176 kb on - strand, within pit at 182.187 kb on - strand, within pit at 182.189 kb on + strand, within pit at 182.206 kb on + strand, within pit at 182.212 kb on + strand, within pit at 182.212 kb on + strand, within pit at 182.212 kb on + strand, within pit at 182.214 kb on - strand, within pit at 182.214 kb on - strand, within pit at 182.225 kb on + strand, within pit at 182.265 kb on - strand, within pit at 182.268 kb on + strand, within pit at 182.268 kb on + strand, within pit at 182.269 kb on + strand, within pit at 182.269 kb on + strand, within pit at 182.269 kb on + strand, within pit at 182.269 kb on + strand, within pit at 182.269 kb on + strand, within pit at 182.276 kb on - strand, within pit at 182.283 kb on - strand, within pit at 182.286 kb on + strand, within pit at 182.286 kb on + strand, within pit at 182.286 kb on + strand, within pit at 182.293 kb on - strand at 182.294 kb on - strand at 182.313 kb on + strand, within pit at 182.321 kb on - strand, within pit at 182.321 kb on - strand, within pit at 182.326 kb on + strand, within pit at 182.336 kb on + strand, within pit at 182.336 kb on + strand, within pit at 182.346 kb on + strand, within pit at 182.373 kb on - strand, within pit at 182.442 kb on + strand, within pit at 182.442 kb on + strand, within pit at 182.445 kb on - strand, within pit
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.125 mg/ml remove 180,169 + -0.6 180,199 + +1.8 180,199 + -0.9 180,207 - -0.0 180,324 + Synpcc7942_0182 0.23 +1.1 180,332 - Synpcc7942_0182 0.24 -0.8 180,517 - Synpcc7942_0182 0.50 -2.2 180,527 + Synpcc7942_0182 0.51 -0.2 180,544 + Synpcc7942_0182 0.53 +0.6 180,562 + Synpcc7942_0182 0.56 +1.7 180,565 - Synpcc7942_0182 0.56 -1.6 180,651 - Synpcc7942_0182 0.68 +1.0 180,689 + Synpcc7942_0182 0.73 +1.7 180,689 + Synpcc7942_0182 0.73 -0.0 180,697 - Synpcc7942_0182 0.75 +1.0 180,697 - Synpcc7942_0182 0.75 +0.4 180,739 + Synpcc7942_0182 0.80 +1.0 180,745 + Synpcc7942_0182 0.81 -0.4 180,755 + Synpcc7942_0182 0.83 -1.0 180,755 + Synpcc7942_0182 0.83 -1.6 180,785 - Synpcc7942_0182 0.87 -1.3 180,791 + Synpcc7942_0182 0.87 +2.3 180,804 - Synpcc7942_0182 0.89 +0.7 180,869 + +1.0 180,874 - -1.6 180,877 - +2.0 180,879 - -2.2 180,879 - +1.7 180,879 - +0.2 180,938 - -2.2 181,062 + -1.2 181,078 + -0.6 181,093 - -1.3 181,147 - Synpcc7942_0183 0.18 -1.6 181,152 - Synpcc7942_0183 0.19 -1.4 181,181 - Synpcc7942_0183 0.26 -2.0 181,228 + Synpcc7942_0183 0.38 -0.2 181,236 - Synpcc7942_0183 0.41 -1.0 181,236 - Synpcc7942_0183 0.41 -2.3 181,241 - Synpcc7942_0183 0.42 -2.9 181,266 + Synpcc7942_0183 0.48 -1.7 181,266 + Synpcc7942_0183 0.48 -1.2 181,266 + Synpcc7942_0183 0.48 -2.3 181,274 - Synpcc7942_0183 0.50 -1.3 181,274 - Synpcc7942_0183 0.50 -2.7 181,274 - Synpcc7942_0183 0.50 -0.3 181,286 + Synpcc7942_0183 0.53 -2.5 181,286 + Synpcc7942_0183 0.53 -0.3 181,307 + Synpcc7942_0183 0.59 -1.0 181,321 + Synpcc7942_0183 0.62 -1.9 181,344 - Synpcc7942_0183 0.68 -3.2 181,357 + Synpcc7942_0183 0.72 +1.9 181,357 + Synpcc7942_0183 0.72 -1.6 181,357 + Synpcc7942_0183 0.72 -1.8 181,365 - Synpcc7942_0183 0.74 -0.6 181,381 + Synpcc7942_0183 0.78 -2.6 181,398 - Synpcc7942_0183 0.82 -0.6 181,417 - Synpcc7942_0183 0.87 -0.9 181,428 + Synpcc7942_0183 0.90 -0.6 181,428 + Synpcc7942_0183 0.90 -3.1 181,429 - +0.4 181,477 + +1.0 181,477 + -1.1 181,477 + +0.7 181,487 + -0.8 181,513 + -0.7 181,513 + -1.0 181,513 + -1.3 181,513 + -0.7 181,513 + -1.3 181,513 + +0.8 181,521 - +1.5 181,521 - -1.2 181,521 - -1.8 181,521 - +1.7 181,521 - -0.0 181,521 - -1.8 181,526 + +1.2 181,527 - -1.0 181,529 - -0.7 181,545 - +2.0 181,555 - +0.7 181,557 + +2.0 181,565 - +1.0 181,565 - -1.8 181,589 + pit Synpcc7942_0184 0.11 -2.0 181,590 + pit Synpcc7942_0184 0.12 -1.6 181,597 + pit Synpcc7942_0184 0.12 +1.0 181,598 - pit Synpcc7942_0184 0.12 +2.6 181,605 - pit Synpcc7942_0184 0.13 -0.8 181,709 + pit Synpcc7942_0184 0.22 -1.8 181,709 + pit Synpcc7942_0184 0.22 -0.0 181,709 + pit Synpcc7942_0184 0.22 -1.8 181,717 - pit Synpcc7942_0184 0.23 +2.0 181,719 + pit Synpcc7942_0184 0.23 -0.6 181,722 - pit Synpcc7942_0184 0.24 -1.8 181,725 + pit Synpcc7942_0184 0.24 +5.1 181,726 + pit Synpcc7942_0184 0.24 -1.0 181,732 - pit Synpcc7942_0184 0.25 -0.0 181,733 - +2.6 181,734 - pit Synpcc7942_0184 0.25 -0.1 181,741 - pit Synpcc7942_0184 0.25 +1.9 181,754 + pit Synpcc7942_0184 0.27 +1.0 181,762 - pit Synpcc7942_0184 0.27 -1.0 181,770 + pit Synpcc7942_0184 0.28 -1.6 181,778 - -0.0 181,783 - pit Synpcc7942_0184 0.29 -1.8 181,790 + pit Synpcc7942_0184 0.30 -1.9 181,806 - pit Synpcc7942_0184 0.31 -1.8 181,806 - pit Synpcc7942_0184 0.31 +0.5 181,806 - pit Synpcc7942_0184 0.31 +2.6 181,811 - pit Synpcc7942_0184 0.32 -1.8 181,811 - pit Synpcc7942_0184 0.32 +0.1 181,821 - pit Synpcc7942_0184 0.33 -1.6 181,822 + pit Synpcc7942_0184 0.33 -1.5 181,843 - pit Synpcc7942_0184 0.35 +1.4 181,859 + pit Synpcc7942_0184 0.36 -1.0 181,859 + pit Synpcc7942_0184 0.36 -0.6 181,859 + pit Synpcc7942_0184 0.36 +0.4 181,859 + pit Synpcc7942_0184 0.36 +1.0 181,867 - pit Synpcc7942_0184 0.37 -0.8 181,867 - pit Synpcc7942_0184 0.37 +0.7 181,867 - pit Synpcc7942_0184 0.37 +0.6 181,867 - pit Synpcc7942_0184 0.37 -0.0 181,874 + pit Synpcc7942_0184 0.38 +0.3 181,874 + pit Synpcc7942_0184 0.38 +0.3 181,874 + pit Synpcc7942_0184 0.38 -0.0 181,874 + pit Synpcc7942_0184 0.38 +1.6 181,882 - pit Synpcc7942_0184 0.38 +2.1 181,882 - pit Synpcc7942_0184 0.38 -0.6 181,882 - pit Synpcc7942_0184 0.38 -3.3 181,882 - pit Synpcc7942_0184 0.38 -0.0 181,918 + pit Synpcc7942_0184 0.42 +1.4 181,918 + pit Synpcc7942_0184 0.42 -1.2 181,941 + pit Synpcc7942_0184 0.44 -0.0 181,944 + pit Synpcc7942_0184 0.44 -0.0 181,951 + +1.0 181,951 + pit Synpcc7942_0184 0.45 -0.6 181,956 + pit Synpcc7942_0184 0.45 -0.3 181,961 + pit Synpcc7942_0184 0.46 +0.2 181,961 + pit Synpcc7942_0184 0.46 +0.4 181,961 + pit Synpcc7942_0184 0.46 -1.7 181,961 + pit Synpcc7942_0184 0.46 -0.4 181,969 - pit Synpcc7942_0184 0.46 +1.1 181,969 - pit Synpcc7942_0184 0.46 +2.0 181,969 - pit Synpcc7942_0184 0.46 -0.5 181,969 - pit Synpcc7942_0184 0.46 +2.2 181,969 - pit Synpcc7942_0184 0.46 +1.0 181,981 - pit Synpcc7942_0184 0.47 -1.0 182,004 + pit Synpcc7942_0184 0.49 +0.4 182,004 + pit Synpcc7942_0184 0.49 -1.3 182,004 + pit Synpcc7942_0184 0.49 +0.1 182,013 - pit Synpcc7942_0184 0.50 +0.4 182,016 + pit Synpcc7942_0184 0.51 -1.0 182,037 + pit Synpcc7942_0184 0.52 -1.3 182,042 + pit Synpcc7942_0184 0.53 +4.5 182,045 - pit Synpcc7942_0184 0.53 -1.0 182,050 - pit Synpcc7942_0184 0.54 +1.8 182,055 - pit Synpcc7942_0184 0.54 +0.4 182,060 - pit Synpcc7942_0184 0.55 +0.5 182,064 - pit Synpcc7942_0184 0.55 -1.6 182,088 + pit Synpcc7942_0184 0.57 -2.8 182,089 + pit Synpcc7942_0184 0.57 +1.0 182,109 - pit Synpcc7942_0184 0.59 -1.8 182,120 + pit Synpcc7942_0184 0.60 +2.0 182,122 + pit Synpcc7942_0184 0.60 -1.9 182,135 + pit Synpcc7942_0184 0.61 +0.6 182,154 + pit Synpcc7942_0184 0.63 -1.0 182,154 + pit Synpcc7942_0184 0.63 -0.0 182,154 + pit Synpcc7942_0184 0.63 -0.0 182,162 - pit Synpcc7942_0184 0.64 +4.3 182,168 + pit Synpcc7942_0184 0.64 -0.0 182,168 + +2.0 182,176 - pit Synpcc7942_0184 0.65 -1.3 182,176 - pit Synpcc7942_0184 0.65 -0.0 182,187 - pit Synpcc7942_0184 0.66 +1.0 182,189 + pit Synpcc7942_0184 0.66 -1.3 182,206 + pit Synpcc7942_0184 0.68 +1.0 182,212 + pit Synpcc7942_0184 0.68 -1.4 182,212 + pit Synpcc7942_0184 0.68 -2.9 182,212 + pit Synpcc7942_0184 0.68 +0.3 182,214 - pit Synpcc7942_0184 0.69 -0.7 182,214 - pit Synpcc7942_0184 0.69 -1.0 182,225 + pit Synpcc7942_0184 0.70 +0.6 182,265 - pit Synpcc7942_0184 0.73 -0.7 182,268 + pit Synpcc7942_0184 0.74 -1.2 182,268 + pit Synpcc7942_0184 0.74 +0.3 182,269 + pit Synpcc7942_0184 0.74 +0.6 182,269 + pit Synpcc7942_0184 0.74 -0.9 182,269 + pit Synpcc7942_0184 0.74 -0.5 182,269 + pit Synpcc7942_0184 0.74 +1.2 182,269 + pit Synpcc7942_0184 0.74 -2.0 182,276 - pit Synpcc7942_0184 0.74 +0.4 182,283 - pit Synpcc7942_0184 0.75 -1.8 182,286 + pit Synpcc7942_0184 0.75 +1.9 182,286 + pit Synpcc7942_0184 0.75 -0.9 182,286 + pit Synpcc7942_0184 0.75 -0.3 182,293 - -1.3 182,294 - -0.0 182,313 + pit Synpcc7942_0184 0.78 +1.0 182,321 - pit Synpcc7942_0184 0.78 +0.3 182,321 - pit Synpcc7942_0184 0.78 -2.2 182,326 + pit Synpcc7942_0184 0.79 -1.0 182,336 + pit Synpcc7942_0184 0.80 +1.0 182,336 + pit Synpcc7942_0184 0.80 -0.4 182,346 + pit Synpcc7942_0184 0.81 +0.5 182,373 - pit Synpcc7942_0184 0.83 -1.6 182,442 + pit Synpcc7942_0184 0.90 -0.0 182,442 + pit Synpcc7942_0184 0.90 +0.2 182,445 - pit Synpcc7942_0184 0.90 -1.3
Or see this region's nucleotide sequence