Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0056

Experiment: Ceftazidime 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0054 and Synpcc7942_0055 are separated by 32 nucleotidesSynpcc7942_0055 and rfbE are separated by 34 nucleotidesrfbE and Synpcc7942_0057 are separated by 3 nucleotides Synpcc7942_0054: Synpcc7942_0054 - hypothetical protein, at 56,423 to 57,190 _0054 Synpcc7942_0055: Synpcc7942_0055 - hypothetical protein, at 57,223 to 57,906 _0055 Synpcc7942_0056: rfbE - perosamine synthetase, at 57,941 to 59,068 rfbE Synpcc7942_0057: Synpcc7942_0057 - putative C-3 methyl transferase, at 59,072 to 60,304 _0057 Position (kb) 57 58 59 60Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 56.953 kb on + strand, within Synpcc7942_0054at 56.961 kb on - strand, within Synpcc7942_0054at 57.014 kb on + strand, within Synpcc7942_0054at 57.014 kb on - strand, within Synpcc7942_0054at 57.022 kb on - strand, within Synpcc7942_0054at 57.147 kb on + strandat 57.278 kb on + strandat 57.329 kb on - strand, within Synpcc7942_0055at 57.386 kb on + strand, within Synpcc7942_0055at 57.483 kb on - strand, within Synpcc7942_0055at 57.528 kb on - strand, within Synpcc7942_0055at 57.687 kb on - strand, within Synpcc7942_0055at 58.021 kb on + strandat 58.064 kb on + strand, within rfbEat 58.067 kb on - strand, within rfbEat 58.071 kb on + strand, within rfbEat 58.221 kb on - strand, within rfbEat 58.258 kb on + strandat 58.276 kb on - strand, within rfbEat 58.484 kb on + strand, within rfbEat 58.545 kb on + strand, within rfbEat 58.568 kb on + strand, within rfbEat 58.706 kb on + strand, within rfbEat 58.717 kb on + strand, within rfbEat 58.828 kb on + strand, within rfbEat 58.864 kb on - strand, within rfbEat 58.884 kb on - strand, within rfbEat 59.064 kb on + strandat 59.203 kb on + strand, within Synpcc7942_0057at 59.203 kb on + strand, within Synpcc7942_0057at 59.211 kb on - strand, within Synpcc7942_0057at 59.318 kb on + strand, within Synpcc7942_0057at 59.319 kb on + strand, within Synpcc7942_0057at 59.326 kb on - strand, within Synpcc7942_0057at 59.491 kb on + strand, within Synpcc7942_0057at 59.503 kb on + strand, within Synpcc7942_0057at 59.511 kb on - strand, within Synpcc7942_0057at 59.561 kb on - strand, within Synpcc7942_0057at 59.571 kb on - strand, within Synpcc7942_0057at 59.620 kb on + strand, within Synpcc7942_0057at 59.622 kb on - strand, within Synpcc7942_0057at 59.628 kb on - strand, within Synpcc7942_0057at 59.646 kb on - strand, within Synpcc7942_0057at 59.660 kb on - strand, within Synpcc7942_0057at 59.677 kb on + strand, within Synpcc7942_0057at 59.677 kb on + strand, within Synpcc7942_0057at 59.718 kb on + strand, within Synpcc7942_0057at 59.719 kb on - strand, within Synpcc7942_0057at 59.752 kb on + strand, within Synpcc7942_0057at 59.779 kb on - strand, within Synpcc7942_0057at 59.843 kb on + strand, within Synpcc7942_0057at 59.846 kb on - strand, within Synpcc7942_0057at 59.908 kb on - strand, within Synpcc7942_0057at 59.920 kb on + strand, within Synpcc7942_0057at 59.928 kb on - strand, within Synpcc7942_0057at 59.950 kb on + strand, within Synpcc7942_0057at 59.956 kb on - strand, within Synpcc7942_0057at 59.958 kb on - strand, within Synpcc7942_0057at 59.973 kb on - strand, within Synpcc7942_0057at 60.011 kb on + strand, within Synpcc7942_0057at 60.017 kb on + strand, within Synpcc7942_0057at 60.018 kb on - strand, within Synpcc7942_0057at 60.047 kb on + strand, within Synpcc7942_0057at 60.066 kb on - strand, within Synpcc7942_0057at 60.066 kb on - strand, within Synpcc7942_0057

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Per-strain Table

Position Strand Gene LocusTag Fraction Ceftazidime 0.125 mg/ml
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56,953 + Synpcc7942_0054 0.69 +0.3
56,961 - Synpcc7942_0054 0.70 +0.3
57,014 + Synpcc7942_0054 0.77 -1.3
57,014 - Synpcc7942_0054 0.77 +1.8
57,022 - Synpcc7942_0054 0.78 -0.8
57,147 + +0.2
57,278 + -0.1
57,329 - Synpcc7942_0055 0.15 +0.8
57,386 + Synpcc7942_0055 0.24 +1.5
57,483 - Synpcc7942_0055 0.38 +0.3
57,528 - Synpcc7942_0055 0.45 -2.5
57,687 - Synpcc7942_0055 0.68 -1.0
58,021 + -2.9
58,064 + rfbE Synpcc7942_0056 0.11 -1.0
58,067 - rfbE Synpcc7942_0056 0.11 -0.5
58,071 + rfbE Synpcc7942_0056 0.12 -1.0
58,221 - rfbE Synpcc7942_0056 0.25 +0.1
58,258 + +1.0
58,276 - rfbE Synpcc7942_0056 0.30 -0.0
58,484 + rfbE Synpcc7942_0056 0.48 -1.7
58,545 + rfbE Synpcc7942_0056 0.54 +0.3
58,568 + rfbE Synpcc7942_0056 0.56 +0.6
58,706 + rfbE Synpcc7942_0056 0.68 -0.3
58,717 + rfbE Synpcc7942_0056 0.69 -1.1
58,828 + rfbE Synpcc7942_0056 0.79 -2.9
58,864 - rfbE Synpcc7942_0056 0.82 +0.1
58,884 - rfbE Synpcc7942_0056 0.84 -0.8
59,064 + -0.8
59,203 + Synpcc7942_0057 0.11 +1.0
59,203 + Synpcc7942_0057 0.11 +1.0
59,211 - Synpcc7942_0057 0.11 +1.7
59,318 + Synpcc7942_0057 0.20 +2.0
59,319 + Synpcc7942_0057 0.20 +2.3
59,326 - Synpcc7942_0057 0.21 +1.0
59,491 + Synpcc7942_0057 0.34 +1.0
59,503 + Synpcc7942_0057 0.35 +0.9
59,511 - Synpcc7942_0057 0.36 +1.5
59,561 - Synpcc7942_0057 0.40 +1.6
59,571 - Synpcc7942_0057 0.40 -0.3
59,620 + Synpcc7942_0057 0.44 -0.2
59,622 - Synpcc7942_0057 0.45 +1.0
59,628 - Synpcc7942_0057 0.45 -0.6
59,646 - Synpcc7942_0057 0.47 +1.2
59,660 - Synpcc7942_0057 0.48 +2.0
59,677 + Synpcc7942_0057 0.49 +1.0
59,677 + Synpcc7942_0057 0.49 -0.6
59,718 + Synpcc7942_0057 0.52 -0.4
59,719 - Synpcc7942_0057 0.52 +0.7
59,752 + Synpcc7942_0057 0.55 -1.6
59,779 - Synpcc7942_0057 0.57 +1.1
59,843 + Synpcc7942_0057 0.63 -1.0
59,846 - Synpcc7942_0057 0.63 -1.6
59,908 - Synpcc7942_0057 0.68 -0.4
59,920 + Synpcc7942_0057 0.69 +0.7
59,928 - Synpcc7942_0057 0.69 -0.0
59,950 + Synpcc7942_0057 0.71 -0.1
59,956 - Synpcc7942_0057 0.72 -1.0
59,958 - Synpcc7942_0057 0.72 +0.8
59,973 - Synpcc7942_0057 0.73 -1.3
60,011 + Synpcc7942_0057 0.76 +1.0
60,017 + Synpcc7942_0057 0.77 -0.7
60,018 - Synpcc7942_0057 0.77 +3.7
60,047 + Synpcc7942_0057 0.79 -1.3
60,066 - Synpcc7942_0057 0.81 -2.1
60,066 - Synpcc7942_0057 0.81 -0.4

Or see this region's nucleotide sequence