Experiment: Ceftazidime 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0036 and Synpcc7942_0037 overlap by 4 nucleotides Synpcc7942_0037 and mutT are separated by 152 nucleotides mutT and gnd are separated by 174 nucleotides
Synpcc7942_0036: Synpcc7942_0036 - hypothetical protein, at 35,341 to 36,126
_0036
Synpcc7942_0037: Synpcc7942_0037 - hypothetical protein, at 36,123 to 36,326
_0037
Synpcc7942_0038: mutT - mutator MutT protein, at 36,479 to 36,955
mutT
Synpcc7942_0039: gnd - 6-phosphogluconate dehydrogenase, at 37,130 to 38,545
gnd
Position (kb) 36
37 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 35.481 kb on + strand, within Synpcc7942_0036 at 35.521 kb on - strand, within Synpcc7942_0036 at 35.539 kb on + strand, within Synpcc7942_0036 at 35.610 kb on + strand, within Synpcc7942_0036 at 35.618 kb on - strand, within Synpcc7942_0036 at 35.637 kb on - strand, within Synpcc7942_0036 at 35.642 kb on - strand, within Synpcc7942_0036 at 35.642 kb on - strand, within Synpcc7942_0036 at 35.655 kb on - strand, within Synpcc7942_0036 at 35.661 kb on + strand, within Synpcc7942_0036 at 35.661 kb on + strand, within Synpcc7942_0036 at 35.668 kb on - strand, within Synpcc7942_0036 at 35.669 kb on - strand, within Synpcc7942_0036 at 35.669 kb on - strand, within Synpcc7942_0036 at 35.682 kb on - strand, within Synpcc7942_0036 at 35.693 kb on - strand, within Synpcc7942_0036 at 35.761 kb on + strand, within Synpcc7942_0036 at 35.761 kb on + strand, within Synpcc7942_0036 at 35.761 kb on + strand, within Synpcc7942_0036 at 35.761 kb on + strand, within Synpcc7942_0036 at 35.761 kb on + strand, within Synpcc7942_0036 at 35.769 kb on - strand, within Synpcc7942_0036 at 35.769 kb on - strand, within Synpcc7942_0036 at 35.769 kb on - strand, within Synpcc7942_0036 at 35.785 kb on + strand, within Synpcc7942_0036 at 35.786 kb on + strand, within Synpcc7942_0036 at 35.790 kb on + strand, within Synpcc7942_0036 at 35.798 kb on - strand, within Synpcc7942_0036 at 35.812 kb on - strand, within Synpcc7942_0036 at 35.820 kb on + strand, within Synpcc7942_0036 at 35.822 kb on + strand, within Synpcc7942_0036 at 35.822 kb on - strand, within Synpcc7942_0036 at 35.830 kb on - strand, within Synpcc7942_0036 at 35.835 kb on - strand, within Synpcc7942_0036 at 35.841 kb on - strand, within Synpcc7942_0036 at 35.870 kb on - strand, within Synpcc7942_0036 at 35.870 kb on - strand, within Synpcc7942_0036 at 35.891 kb on - strand, within Synpcc7942_0036 at 35.891 kb on - strand, within Synpcc7942_0036 at 35.893 kb on + strand, within Synpcc7942_0036 at 35.901 kb on - strand, within Synpcc7942_0036 at 35.913 kb on - strand, within Synpcc7942_0036 at 35.926 kb on + strand, within Synpcc7942_0036 at 35.926 kb on - strand, within Synpcc7942_0036 at 35.943 kb on + strand, within Synpcc7942_0036 at 35.944 kb on + strand, within Synpcc7942_0036 at 35.950 kb on + strand, within Synpcc7942_0036 at 35.951 kb on - strand, within Synpcc7942_0036 at 35.953 kb on - strand, within Synpcc7942_0036 at 35.967 kb on + strand, within Synpcc7942_0036 at 35.967 kb on + strand, within Synpcc7942_0036 at 35.972 kb on + strand, within Synpcc7942_0036 at 35.972 kb on + strand, within Synpcc7942_0036 at 35.972 kb on + strand, within Synpcc7942_0036 at 35.972 kb on + strand, within Synpcc7942_0036 at 35.972 kb on + strand, within Synpcc7942_0036 at 35.972 kb on + strand, within Synpcc7942_0036 at 35.972 kb on + strand, within Synpcc7942_0036 at 35.975 kb on - strand, within Synpcc7942_0036 at 35.975 kb on - strand, within Synpcc7942_0036 at 35.975 kb on - strand, within Synpcc7942_0036 at 35.977 kb on + strand, within Synpcc7942_0036 at 35.980 kb on - strand, within Synpcc7942_0036 at 35.980 kb on - strand, within Synpcc7942_0036 at 35.980 kb on - strand, within Synpcc7942_0036 at 35.980 kb on - strand, within Synpcc7942_0036 at 35.980 kb on - strand, within Synpcc7942_0036 at 35.999 kb on + strand, within Synpcc7942_0036 at 36.001 kb on - strand, within Synpcc7942_0036 at 36.012 kb on + strand, within Synpcc7942_0036 at 36.018 kb on - strand, within Synpcc7942_0036 at 36.025 kb on + strand, within Synpcc7942_0036 at 36.037 kb on - strand, within Synpcc7942_0036 at 36.064 kb on + strand at 36.072 kb on - strand at 36.084 kb on - strand at 36.101 kb on + strand at 36.101 kb on + strand at 36.101 kb on + strand at 36.106 kb on + strand at 36.111 kb on + strand at 36.111 kb on + strand at 36.111 kb on + strand at 36.111 kb on + strand at 36.111 kb on - strand at 36.119 kb on - strand at 36.120 kb on + strand at 36.120 kb on + strand at 36.121 kb on + strand at 36.142 kb on - strand at 36.218 kb on + strand, within Synpcc7942_0037 at 36.280 kb on - strand, within Synpcc7942_0037 at 36.287 kb on - strand, within Synpcc7942_0037 at 36.403 kb on - strand at 36.413 kb on - strand at 36.416 kb on + strand at 36.419 kb on - strand at 36.426 kb on + strand at 36.429 kb on - strand at 36.505 kb on + strand at 36.518 kb on - strand at 36.537 kb on + strand, within mutT at 36.552 kb on + strand, within mutT at 36.562 kb on - strand, within mutT at 36.563 kb on - strand, within mutT at 36.755 kb on + strand, within mutT at 36.794 kb on + strand, within mutT at 36.837 kb on - strand, within mutT at 36.855 kb on + strand, within mutT at 36.855 kb on + strand, within mutT at 36.863 kb on - strand, within mutT at 36.863 kb on - strand, within mutT at 36.863 kb on - strand, within mutT at 36.863 kb on - strand, within mutT at 36.907 kb on + strand, within mutT at 36.915 kb on - strand at 36.938 kb on - strand at 36.938 kb on - strand at 36.938 kb on - strand at 36.957 kb on - strand at 37.016 kb on - strand at 37.061 kb on - strand at 37.092 kb on + strand at 37.144 kb on - strand at 37.152 kb on - strand at 37.220 kb on + strand at 37.220 kb on + strand at 37.220 kb on + strand at 37.220 kb on + strand at 37.220 kb on + strand at 37.228 kb on - strand at 37.228 kb on - strand at 37.228 kb on - strand at 37.228 kb on - strand at 37.252 kb on + strand at 37.260 kb on - strand at 37.274 kb on + strand, within gnd at 37.301 kb on + strand, within gnd at 37.359 kb on - strand, within gnd at 37.423 kb on - strand, within gnd at 37.472 kb on - strand, within gnd at 37.528 kb on - strand, within gnd at 37.591 kb on - strand, within gnd at 37.605 kb on + strand, within gnd at 37.608 kb on - strand, within gnd at 37.659 kb on + strand, within gnd at 37.669 kb on - strand, within gnd at 37.692 kb on + strand, within gnd at 37.700 kb on - strand, within gnd at 37.727 kb on + strand, within gnd at 37.727 kb on + strand, within gnd at 37.728 kb on + strand, within gnd at 37.738 kb on + strand, within gnd at 37.756 kb on + strand, within gnd at 37.781 kb on - strand, within gnd at 37.790 kb on + strand, within gnd
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.125 mg/ml remove 35,481 + Synpcc7942_0036 0.18 -1.8 35,521 - Synpcc7942_0036 0.23 -2.3 35,539 + Synpcc7942_0036 0.25 -0.6 35,610 + Synpcc7942_0036 0.34 -0.1 35,618 - Synpcc7942_0036 0.35 -1.8 35,637 - Synpcc7942_0036 0.38 +1.1 35,642 - Synpcc7942_0036 0.38 -1.0 35,642 - Synpcc7942_0036 0.38 -0.6 35,655 - Synpcc7942_0036 0.40 +2.4 35,661 + Synpcc7942_0036 0.41 +1.0 35,661 + Synpcc7942_0036 0.41 +3.1 35,668 - Synpcc7942_0036 0.42 -0.0 35,669 - Synpcc7942_0036 0.42 +0.7 35,669 - Synpcc7942_0036 0.42 -0.6 35,682 - Synpcc7942_0036 0.43 +0.3 35,693 - Synpcc7942_0036 0.45 -0.7 35,761 + Synpcc7942_0036 0.53 +1.0 35,761 + Synpcc7942_0036 0.53 +0.3 35,761 + Synpcc7942_0036 0.53 -1.8 35,761 + Synpcc7942_0036 0.53 +0.8 35,761 + Synpcc7942_0036 0.53 -1.0 35,769 - Synpcc7942_0036 0.54 -1.2 35,769 - Synpcc7942_0036 0.54 -1.3 35,769 - Synpcc7942_0036 0.54 +1.0 35,785 + Synpcc7942_0036 0.56 -0.5 35,786 + Synpcc7942_0036 0.57 -0.5 35,790 + Synpcc7942_0036 0.57 -0.0 35,798 - Synpcc7942_0036 0.58 +0.3 35,812 - Synpcc7942_0036 0.60 -0.1 35,820 + Synpcc7942_0036 0.61 -1.2 35,822 + Synpcc7942_0036 0.61 -1.3 35,822 - Synpcc7942_0036 0.61 +1.0 35,830 - Synpcc7942_0036 0.62 -0.0 35,835 - Synpcc7942_0036 0.63 +3.1 35,841 - Synpcc7942_0036 0.64 -0.0 35,870 - Synpcc7942_0036 0.67 -0.0 35,870 - Synpcc7942_0036 0.67 +1.4 35,891 - Synpcc7942_0036 0.70 +2.0 35,891 - Synpcc7942_0036 0.70 +0.4 35,893 + Synpcc7942_0036 0.70 -1.3 35,901 - Synpcc7942_0036 0.71 -1.1 35,913 - Synpcc7942_0036 0.73 +1.3 35,926 + Synpcc7942_0036 0.74 +1.0 35,926 - Synpcc7942_0036 0.74 +1.0 35,943 + Synpcc7942_0036 0.77 +1.5 35,944 + Synpcc7942_0036 0.77 +0.2 35,950 + Synpcc7942_0036 0.77 +2.1 35,951 - Synpcc7942_0036 0.78 +3.9 35,953 - Synpcc7942_0036 0.78 +1.0 35,967 + Synpcc7942_0036 0.80 +0.6 35,967 + Synpcc7942_0036 0.80 +1.6 35,972 + Synpcc7942_0036 0.80 -2.7 35,972 + Synpcc7942_0036 0.80 -1.3 35,972 + Synpcc7942_0036 0.80 -0.0 35,972 + Synpcc7942_0036 0.80 -0.8 35,972 + Synpcc7942_0036 0.80 -0.3 35,972 + Synpcc7942_0036 0.80 +0.4 35,972 + Synpcc7942_0036 0.80 -0.0 35,975 - Synpcc7942_0036 0.81 +2.0 35,975 - Synpcc7942_0036 0.81 +1.0 35,975 - Synpcc7942_0036 0.81 +4.5 35,977 + Synpcc7942_0036 0.81 -0.2 35,980 - Synpcc7942_0036 0.81 -1.3 35,980 - Synpcc7942_0036 0.81 +1.3 35,980 - Synpcc7942_0036 0.81 +1.0 35,980 - Synpcc7942_0036 0.81 +1.3 35,980 - Synpcc7942_0036 0.81 -1.8 35,999 + Synpcc7942_0036 0.84 +3.5 36,001 - Synpcc7942_0036 0.84 +2.6 36,012 + Synpcc7942_0036 0.85 -1.0 36,018 - Synpcc7942_0036 0.86 -2.9 36,025 + Synpcc7942_0036 0.87 +1.0 36,037 - Synpcc7942_0036 0.89 +1.5 36,064 + +2.2 36,072 - +1.3 36,084 - +1.0 36,101 + +0.3 36,101 + +0.2 36,101 + +1.0 36,106 + -0.3 36,111 + -0.6 36,111 + -2.5 36,111 + +5.0 36,111 + +2.0 36,111 - -0.0 36,119 - +0.2 36,120 + +0.6 36,120 + -1.0 36,121 + -1.3 36,142 - +1.6 36,218 + Synpcc7942_0037 0.47 +1.6 36,280 - Synpcc7942_0037 0.77 -1.3 36,287 - Synpcc7942_0037 0.80 +1.7 36,403 - +1.0 36,413 - -0.9 36,416 + -0.0 36,419 - +0.8 36,426 + +0.7 36,429 - -1.0 36,505 + -1.1 36,518 - -0.6 36,537 + mutT Synpcc7942_0038 0.12 -0.4 36,552 + mutT Synpcc7942_0038 0.15 +2.0 36,562 - mutT Synpcc7942_0038 0.17 +2.0 36,563 - mutT Synpcc7942_0038 0.18 +1.7 36,755 + mutT Synpcc7942_0038 0.58 -0.0 36,794 + mutT Synpcc7942_0038 0.66 -0.0 36,837 - mutT Synpcc7942_0038 0.75 -2.2 36,855 + mutT Synpcc7942_0038 0.79 -1.3 36,855 + mutT Synpcc7942_0038 0.79 +3.2 36,863 - mutT Synpcc7942_0038 0.81 -1.6 36,863 - mutT Synpcc7942_0038 0.81 +3.1 36,863 - mutT Synpcc7942_0038 0.81 -0.6 36,863 - mutT Synpcc7942_0038 0.81 +2.6 36,907 + mutT Synpcc7942_0038 0.90 +0.9 36,915 - -2.0 36,938 - -1.0 36,938 - -1.3 36,938 - +1.9 36,957 - -1.8 37,016 - -0.6 37,061 - -1.3 37,092 + -3.2 37,144 - +1.6 37,152 - -1.8 37,220 + -0.6 37,220 + -1.0 37,220 + -0.6 37,220 + +1.0 37,220 + -0.6 37,228 - -0.0 37,228 - -0.6 37,228 - -2.2 37,228 - -0.0 37,252 + +1.0 37,260 - -0.6 37,274 + gnd Synpcc7942_0039 0.10 +1.0 37,301 + gnd Synpcc7942_0039 0.12 +1.0 37,359 - gnd Synpcc7942_0039 0.16 +1.0 37,423 - gnd Synpcc7942_0039 0.21 +0.4 37,472 - gnd Synpcc7942_0039 0.24 +1.0 37,528 - gnd Synpcc7942_0039 0.28 -0.0 37,591 - gnd Synpcc7942_0039 0.33 +1.0 37,605 + gnd Synpcc7942_0039 0.34 +1.0 37,608 - gnd Synpcc7942_0039 0.34 -0.6 37,659 + gnd Synpcc7942_0039 0.37 +1.0 37,669 - gnd Synpcc7942_0039 0.38 +1.0 37,692 + gnd Synpcc7942_0039 0.40 -1.0 37,700 - gnd Synpcc7942_0039 0.40 -0.0 37,727 + gnd Synpcc7942_0039 0.42 +1.0 37,727 + gnd Synpcc7942_0039 0.42 -0.0 37,728 + gnd Synpcc7942_0039 0.42 +1.0 37,738 + gnd Synpcc7942_0039 0.43 -1.0 37,756 + gnd Synpcc7942_0039 0.44 -0.0 37,781 - gnd Synpcc7942_0039 0.46 +2.6 37,790 + gnd Synpcc7942_0039 0.47 -1.3
Or see this region's nucleotide sequence