Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_998

Experiment: butyrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	butyrate (C)
1,131,053	-		Pf1N1B4_996	0.74	-1.0
1,131,053	-		Pf1N1B4_996	0.74	-0.1
1,131,118	-		Pf1N1B4_996	0.82	+0.8
1,131,118	-		Pf1N1B4_996	0.82	-1.0
1,131,140	-		Pf1N1B4_996	0.85	-1.5
1,131,140	-		Pf1N1B4_996	0.85	-1.0
1,131,264	-				+1.6
1,131,339	-				+0.0
1,131,339	-				-0.5
1,131,339	-				-1.2
1,131,339	-				+0.5
1,131,339	-				-2.0
1,131,339	-				-2.3
1,131,339	-				+2.9
1,131,339	-				+1.3
1,131,339	-				-1.0
1,131,339	-				-1.5
1,131,343	-				+0.1
1,131,343	-				-0.4
1,131,343	-				-0.3
1,131,343	-				-0.1
1,131,343	-				+0.5
1,131,343	-				+0.0
1,131,435	+				-0.5
1,131,436	-				-1.8
1,131,444	+				-0.5
1,131,445	-				-0.2
1,131,445	-				+1.0
1,131,445	-				-1.7
1,131,472	+		Pf1N1B4_997	0.12	-0.5
1,131,472	+		Pf1N1B4_997	0.12	-1.8
1,131,472	+		Pf1N1B4_997	0.12	+1.0
1,131,472	+		Pf1N1B4_997	0.12	-0.7
1,131,472	+		Pf1N1B4_997	0.12	+0.0
1,131,472	+		Pf1N1B4_997	0.12	-0.2
1,131,473	-		Pf1N1B4_997	0.12	-0.5
1,131,473	-		Pf1N1B4_997	0.12	+0.9
1,131,473	-		Pf1N1B4_997	0.12	-1.0
1,131,473	-		Pf1N1B4_997	0.12	-1.5
1,131,473	-		Pf1N1B4_997	0.12	-0.4
1,131,473	-		Pf1N1B4_997	0.12	+0.0
1,131,526	+		Pf1N1B4_997	0.25	+0.0
1,131,526	+		Pf1N1B4_997	0.25	-0.2
1,131,526	+		Pf1N1B4_997	0.25	-0.4
1,131,526	+		Pf1N1B4_997	0.25	-1.0
1,131,526	+		Pf1N1B4_997	0.25	-1.4
1,131,526	+		Pf1N1B4_997	0.25	+0.5
1,131,526	+		Pf1N1B4_997	0.25	+0.0
1,131,526	+		Pf1N1B4_997	0.25	-1.3
1,131,526	+		Pf1N1B4_997	0.25	+1.6
1,131,527	-		Pf1N1B4_997	0.25	+0.0
1,131,527	-		Pf1N1B4_997	0.25	+0.9
1,131,527	-		Pf1N1B4_997	0.25	+0.0
1,131,527	-		Pf1N1B4_997	0.25	+0.9
1,131,667	+		Pf1N1B4_997	0.60	+1.2
1,131,667	+		Pf1N1B4_997	0.60	-1.5
1,131,675	+		Pf1N1B4_997	0.62	-1.2
1,131,675	+		Pf1N1B4_997	0.62	+0.5
1,131,838	+				+0.0
1,131,839	-				-1.0
1,131,909	+				+0.6
1,131,909	+				+1.2
1,131,909	+				+1.0
1,131,910	-				+0.6
1,131,910	-				-1.0
1,131,922	+				-1.5
1,131,922	+				-0.4
1,131,977	+				+1.4
1,132,014	+				+2.2
1,132,014	+				+2.1
1,132,014	+				+0.9
1,132,014	+				+0.0
1,132,015	-				+3.0
1,132,015	-				+2.6
1,132,098	+		Pf1N1B4_998	0.14	+2.9
1,132,099	-		Pf1N1B4_998	0.14	+0.8
1,132,154	+		Pf1N1B4_998	0.21	+2.6
1,132,154	+		Pf1N1B4_998	0.21	+2.9
1,132,154	+		Pf1N1B4_998	0.21	+0.5
1,132,154	+		Pf1N1B4_998	0.21	-0.3
1,132,154	+		Pf1N1B4_998	0.21	+0.5
1,132,154	+		Pf1N1B4_998	0.21	+2.2
1,132,154	+		Pf1N1B4_998	0.21	+2.2
1,132,155	-		Pf1N1B4_998	0.21	+1.5
1,132,155	-		Pf1N1B4_998	0.21	+1.8
1,132,155	-		Pf1N1B4_998	0.21	+2.8
1,132,155	-		Pf1N1B4_998	0.21	+3.1
1,132,155	-		Pf1N1B4_998	0.21	+2.4
1,132,155	-		Pf1N1B4_998	0.21	+1.9
1,132,155	-		Pf1N1B4_998	0.21	+0.8
1,132,155	-		Pf1N1B4_998	0.21	+2.6
1,132,155	-		Pf1N1B4_998	0.21	+3.0
1,132,155	-		Pf1N1B4_998	0.21	+0.5
1,132,155	-		Pf1N1B4_998	0.21	+2.1
1,132,155	-		Pf1N1B4_998	0.21	-0.9
1,132,155	-		Pf1N1B4_998	0.21	-0.9
1,132,328	+		Pf1N1B4_998	0.41	+2.1
1,132,361	+		Pf1N1B4_998	0.45	-1.5
1,132,362	-		Pf1N1B4_998	0.45	+2.1
1,132,362	-		Pf1N1B4_998	0.45	+2.5
1,132,649	-		Pf1N1B4_998	0.78	+1.1
1,132,649	-		Pf1N1B4_998	0.78	+1.3
1,132,757	+				+1.6
1,132,757	+				+1.6
1,132,757	+				+1.9
1,132,757	+				+0.1
1,132,757	+				+1.1
1,132,757	+				+1.0
1,132,757	+				+2.9
1,132,757	+				+0.6
1,132,757	+				+0.1
1,132,758	-				+1.8
1,132,758	-				+2.3
1,132,758	-				+1.1
1,132,758	-				+0.5
1,132,758	-				+0.6
1,132,758	-				+2.4
1,132,758	-				+2.5
1,132,758	-				+0.4
1,132,758	-				+2.6
1,132,758	-				+1.9
1,132,758	-				+1.1
1,132,858	+				+1.4
1,133,034	+		Pf1N1B4_999	0.84	+3.4
1,133,034	+		Pf1N1B4_999	0.84	+3.6
1,133,034	+		Pf1N1B4_999	0.84	+1.2
1,133,034	+		Pf1N1B4_999	0.84	+1.4
1,133,034	+		Pf1N1B4_999	0.84	+1.4
1,133,035	-		Pf1N1B4_999	0.85	+1.4
1,133,035	-		Pf1N1B4_999	0.85	-1.4
1,133,035	-				+2.5
1,133,035	-		Pf1N1B4_999	0.85	+2.9
1,133,035	-		Pf1N1B4_999	0.85	-2.3
1,133,035	-		Pf1N1B4_999	0.85	+0.5
1,133,035	-		Pf1N1B4_999	0.85	+2.0
1,133,090	+				+2.1
1,133,091	-				+0.6
1,133,097	-				+1.4
1,133,097	-				-0.8
1,133,097	-				-1.3
1,133,103	+				-1.5
1,133,104	-				+0.1
1,133,104	-				-2.2
1,133,104	-				+0.1
1,133,104	-				-1.9
1,133,104	-				-0.8
1,133,104	-				+1.1
1,133,104	-				-1.4
1,133,104	-				-1.3
1,133,104	-				-0.4
1,133,107	+				+0.1
1,133,107	+				+0.9
1,133,161	+				+4.0
1,133,162	-				+1.3
1,133,162	-				+0.8
1,133,162	-				+0.1
1,133,162	-				+0.6
1,133,356	+		Pf1N1B4_1000	0.13	+1.9
1,133,357	-		Pf1N1B4_1000	0.13	+0.4
1,133,357	-		Pf1N1B4_1000	0.13	+1.4
1,133,357	-		Pf1N1B4_1000	0.13	+1.5
1,133,486	-		Pf1N1B4_1000	0.19	+1.6
1,133,561	-		Pf1N1B4_1000	0.22	+1.6
1,133,664	-		Pf1N1B4_1000	0.27	+1.5
1,133,664	-		Pf1N1B4_1000	0.27	+1.8
1,133,678	-		Pf1N1B4_1000	0.27	+0.4
1,133,678	-		Pf1N1B4_1000	0.27	+0.1
1,133,678	-		Pf1N1B4_1000	0.27	+1.9
1,133,678	-		Pf1N1B4_1000	0.27	+3.2
1,133,695	+		Pf1N1B4_1000	0.28	+0.8
1,133,704	+		Pf1N1B4_1000	0.28	+3.1
1,133,704	+		Pf1N1B4_1000	0.28	+1.6
1,133,704	+		Pf1N1B4_1000	0.28	+0.5
1,133,704	+		Pf1N1B4_1000	0.28	+1.2
1,133,705	-		Pf1N1B4_1000	0.28	+1.1
1,133,705	-		Pf1N1B4_1000	0.28	+1.2
1,133,773	+		Pf1N1B4_1000	0.31	+1.1