Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_854 and Pf1N1B4_855 are separated by 3 nucleotides Pf1N1B4_855 and Pf1N1B4_856 overlap by 1 nucleotides Pf1N1B4_856 and Pf1N1B4_857 are separated by 12 nucleotides
Pf1N1B4_854 - 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC 1.17.7.1), at 983,667 to 984,776
_854
Pf1N1B4_855 - FIG021952: putative membrane protein, at 984,780 to 985,820
_855
Pf1N1B4_856 - Type IV pilus biogenesis protein PilF, at 985,820 to 986,578
_856
Pf1N1B4_857 - Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-), at 986,591 to 987,739
_857
Position (kb) 984
985
986 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 984.851 kb on - strand at 984.851 kb on - strand at 984.851 kb on - strand at 984.851 kb on - strand at 984.851 kb on - strand at 984.851 kb on - strand at 984.851 kb on - strand at 984.851 kb on - strand at 984.851 kb on - strand at 984.851 kb on - strand at 984.851 kb on - strand at 984.851 kb on - strand at 984.851 kb on - strand at 984.930 kb on - strand, within Pf1N1B4_855 at 984.930 kb on - strand, within Pf1N1B4_855 at 984.930 kb on - strand, within Pf1N1B4_855 at 984.930 kb on - strand, within Pf1N1B4_855 at 985.485 kb on - strand, within Pf1N1B4_855 at 985.837 kb on - strand at 985.846 kb on - strand at 985.846 kb on - strand at 985.944 kb on - strand, within Pf1N1B4_856 at 985.944 kb on - strand, within Pf1N1B4_856 at 985.944 kb on - strand at 985.949 kb on - strand, within Pf1N1B4_856 at 985.987 kb on - strand, within Pf1N1B4_856 at 985.990 kb on - strand, within Pf1N1B4_856 at 985.990 kb on - strand, within Pf1N1B4_856 at 986.007 kb on + strand, within Pf1N1B4_856 at 986.008 kb on - strand, within Pf1N1B4_856 at 986.008 kb on - strand, within Pf1N1B4_856 at 986.008 kb on - strand, within Pf1N1B4_856 at 986.008 kb on - strand, within Pf1N1B4_856 at 986.008 kb on - strand, within Pf1N1B4_856 at 986.008 kb on - strand, within Pf1N1B4_856 at 986.008 kb on - strand, within Pf1N1B4_856 at 986.008 kb on - strand, within Pf1N1B4_856 at 986.008 kb on - strand, within Pf1N1B4_856 at 986.023 kb on - strand, within Pf1N1B4_856 at 986.023 kb on - strand, within Pf1N1B4_856 at 986.439 kb on + strand, within Pf1N1B4_856 at 986.461 kb on - strand, within Pf1N1B4_856 at 986.578 kb on + strand at 986.578 kb on + strand at 986.578 kb on + strand at 986.579 kb on - strand at 986.579 kb on - strand at 986.579 kb on - strand at 986.579 kb on - strand at 986.579 kb on - strand at 986.592 kb on + strand at 986.592 kb on + strand at 986.592 kb on + strand at 986.592 kb on + strand at 986.592 kb on + strand at 986.593 kb on - strand at 986.593 kb on - strand at 986.593 kb on - strand at 986.596 kb on + strand at 986.596 kb on + strand at 986.597 kb on - strand at 986.597 kb on - strand at 986.597 kb on - strand at 986.656 kb on - strand at 986.656 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 984,851 - +0.4 984,851 - -1.6 984,851 - +0.0 984,851 - -1.0 984,851 - -0.7 984,851 - -1.0 984,851 - +2.3 984,851 - -1.0 984,851 - -1.0 984,851 - +0.1 984,851 - +0.4 984,851 - +0.0 984,851 - +0.3 984,930 - Pf1N1B4_855 0.14 -1.2 984,930 - Pf1N1B4_855 0.14 +0.7 984,930 - Pf1N1B4_855 0.14 -1.0 984,930 - Pf1N1B4_855 0.14 -1.8 985,485 - Pf1N1B4_855 0.68 +0.6 985,837 - -0.6 985,846 - -0.6 985,846 - +1.3 985,944 - Pf1N1B4_856 0.16 -0.3 985,944 - Pf1N1B4_856 0.16 +0.0 985,944 - -1.6 985,949 - Pf1N1B4_856 0.17 +0.7 985,987 - Pf1N1B4_856 0.22 +2.0 985,990 - Pf1N1B4_856 0.22 +0.0 985,990 - Pf1N1B4_856 0.22 +0.5 986,007 + Pf1N1B4_856 0.25 +0.0 986,008 - Pf1N1B4_856 0.25 -0.6 986,008 - Pf1N1B4_856 0.25 +1.0 986,008 - Pf1N1B4_856 0.25 +0.0 986,008 - Pf1N1B4_856 0.25 +0.0 986,008 - Pf1N1B4_856 0.25 -3.0 986,008 - Pf1N1B4_856 0.25 -0.4 986,008 - Pf1N1B4_856 0.25 -1.3 986,008 - Pf1N1B4_856 0.25 -2.0 986,008 - Pf1N1B4_856 0.25 +0.8 986,023 - Pf1N1B4_856 0.27 -0.7 986,023 - Pf1N1B4_856 0.27 -1.5 986,439 + Pf1N1B4_856 0.82 -0.6 986,461 - Pf1N1B4_856 0.84 +0.7 986,578 + +2.0 986,578 + +0.0 986,578 + +1.6 986,579 - +0.0 986,579 - +0.8 986,579 - -0.6 986,579 - +0.7 986,579 - +1.8 986,592 + +0.0 986,592 + +1.6 986,592 + -0.8 986,592 + +0.5 986,592 + +0.0 986,593 - +0.3 986,593 - -0.0 986,593 - -0.6 986,596 + -0.4 986,596 + +0.0 986,597 - +2.0 986,597 - +0.0 986,597 - -2.0 986,656 - +1.0 986,656 - +1.4
Or see this region's nucleotide sequence