Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2872 and Pf1N1B4_2873 overlap by 4 nucleotides Pf1N1B4_2873 and Pf1N1B4_2874 are separated by 24 nucleotides
Pf1N1B4_2872 - FIG00955330: hypothetical protein, at 3,218,545 to 3,220,101
_2872
Pf1N1B4_2873 - hypothetical protein, at 3,220,098 to 3,220,244
_2873
Pf1N1B4_2874 - Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-), at 3,220,269 to 3,222,536
_2874
Position (kb)
3220
3221 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3219.113 kb on + strand, within Pf1N1B4_2872 at 3219.113 kb on + strand, within Pf1N1B4_2872 at 3219.113 kb on + strand, within Pf1N1B4_2872 at 3219.113 kb on + strand, within Pf1N1B4_2872 at 3219.113 kb on + strand, within Pf1N1B4_2872 at 3219.113 kb on + strand, within Pf1N1B4_2872 at 3219.114 kb on - strand, within Pf1N1B4_2872 at 3219.114 kb on - strand, within Pf1N1B4_2872 at 3219.114 kb on - strand, within Pf1N1B4_2872 at 3219.114 kb on - strand, within Pf1N1B4_2872 at 3219.114 kb on - strand, within Pf1N1B4_2872 at 3219.114 kb on - strand, within Pf1N1B4_2872 at 3219.114 kb on - strand, within Pf1N1B4_2872 at 3219.114 kb on - strand, within Pf1N1B4_2872 at 3219.114 kb on - strand, within Pf1N1B4_2872 at 3219.114 kb on - strand, within Pf1N1B4_2872 at 3219.134 kb on + strand, within Pf1N1B4_2872 at 3219.160 kb on - strand, within Pf1N1B4_2872 at 3219.239 kb on + strand, within Pf1N1B4_2872 at 3219.266 kb on + strand, within Pf1N1B4_2872 at 3219.492 kb on + strand, within Pf1N1B4_2872 at 3219.870 kb on - strand, within Pf1N1B4_2872 at 3219.870 kb on - strand, within Pf1N1B4_2872 at 3219.981 kb on + strand at 3220.206 kb on + strand, within Pf1N1B4_2873 at 3220.206 kb on + strand, within Pf1N1B4_2873 at 3220.206 kb on + strand, within Pf1N1B4_2873 at 3220.206 kb on + strand, within Pf1N1B4_2873 at 3220.206 kb on + strand, within Pf1N1B4_2873 at 3220.208 kb on + strand, within Pf1N1B4_2873 at 3220.209 kb on - strand, within Pf1N1B4_2873 at 3220.795 kb on - strand, within Pf1N1B4_2874 at 3220.840 kb on - strand, within Pf1N1B4_2874 at 3221.010 kb on + strand, within Pf1N1B4_2874
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 3,219,113 + Pf1N1B4_2872 0.36 +0.2 3,219,113 + Pf1N1B4_2872 0.36 -1.2 3,219,113 + Pf1N1B4_2872 0.36 +0.7 3,219,113 + Pf1N1B4_2872 0.36 -2.0 3,219,113 + Pf1N1B4_2872 0.36 -0.1 3,219,113 + Pf1N1B4_2872 0.36 -0.2 3,219,114 - Pf1N1B4_2872 0.37 +0.4 3,219,114 - Pf1N1B4_2872 0.37 -0.1 3,219,114 - Pf1N1B4_2872 0.37 -1.1 3,219,114 - Pf1N1B4_2872 0.37 -0.5 3,219,114 - Pf1N1B4_2872 0.37 -0.7 3,219,114 - Pf1N1B4_2872 0.37 +0.5 3,219,114 - Pf1N1B4_2872 0.37 -0.5 3,219,114 - Pf1N1B4_2872 0.37 +0.2 3,219,114 - Pf1N1B4_2872 0.37 +0.6 3,219,114 - Pf1N1B4_2872 0.37 +0.9 3,219,134 + Pf1N1B4_2872 0.38 +0.2 3,219,160 - Pf1N1B4_2872 0.39 +0.7 3,219,239 + Pf1N1B4_2872 0.45 +1.2 3,219,266 + Pf1N1B4_2872 0.46 -1.2 3,219,492 + Pf1N1B4_2872 0.61 +0.4 3,219,870 - Pf1N1B4_2872 0.85 +2.5 3,219,870 - Pf1N1B4_2872 0.85 +0.2 3,219,981 + -0.6 3,220,206 + Pf1N1B4_2873 0.73 -1.4 3,220,206 + Pf1N1B4_2873 0.73 -0.5 3,220,206 + Pf1N1B4_2873 0.73 -1.4 3,220,206 + Pf1N1B4_2873 0.73 -1.3 3,220,206 + Pf1N1B4_2873 0.73 -0.6 3,220,208 + Pf1N1B4_2873 0.75 +1.7 3,220,209 - Pf1N1B4_2873 0.76 -1.1 3,220,795 - Pf1N1B4_2874 0.23 -0.0 3,220,840 - Pf1N1B4_2874 0.25 +0.2 3,221,010 + Pf1N1B4_2874 0.33 -1.1
Or see this region's nucleotide sequence