Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2873

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2872 and Pf1N1B4_2873 overlap by 4 nucleotidesPf1N1B4_2873 and Pf1N1B4_2874 are separated by 24 nucleotides Pf1N1B4_2872 - FIG00955330: hypothetical protein, at 3,218,545 to 3,220,101 _2872 Pf1N1B4_2873 - hypothetical protein, at 3,220,098 to 3,220,244 _2873 Pf1N1B4_2874 - Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-), at 3,220,269 to 3,222,536 _2874 Position (kb) 3220 3221Strain fitness (log2 ratio) -2 -1 0 1 2at 3219.113 kb on + strand, within Pf1N1B4_2872at 3219.113 kb on + strand, within Pf1N1B4_2872at 3219.113 kb on + strand, within Pf1N1B4_2872at 3219.113 kb on + strand, within Pf1N1B4_2872at 3219.113 kb on + strand, within Pf1N1B4_2872at 3219.113 kb on + strand, within Pf1N1B4_2872at 3219.114 kb on - strand, within Pf1N1B4_2872at 3219.114 kb on - strand, within Pf1N1B4_2872at 3219.114 kb on - strand, within Pf1N1B4_2872at 3219.114 kb on - strand, within Pf1N1B4_2872at 3219.114 kb on - strand, within Pf1N1B4_2872at 3219.114 kb on - strand, within Pf1N1B4_2872at 3219.114 kb on - strand, within Pf1N1B4_2872at 3219.114 kb on - strand, within Pf1N1B4_2872at 3219.114 kb on - strand, within Pf1N1B4_2872at 3219.114 kb on - strand, within Pf1N1B4_2872at 3219.134 kb on + strand, within Pf1N1B4_2872at 3219.160 kb on - strand, within Pf1N1B4_2872at 3219.239 kb on + strand, within Pf1N1B4_2872at 3219.266 kb on + strand, within Pf1N1B4_2872at 3219.492 kb on + strand, within Pf1N1B4_2872at 3219.870 kb on - strand, within Pf1N1B4_2872at 3219.870 kb on - strand, within Pf1N1B4_2872at 3219.981 kb on + strandat 3220.206 kb on + strand, within Pf1N1B4_2873at 3220.206 kb on + strand, within Pf1N1B4_2873at 3220.206 kb on + strand, within Pf1N1B4_2873at 3220.206 kb on + strand, within Pf1N1B4_2873at 3220.206 kb on + strand, within Pf1N1B4_2873at 3220.208 kb on + strand, within Pf1N1B4_2873at 3220.209 kb on - strand, within Pf1N1B4_2873at 3220.795 kb on - strand, within Pf1N1B4_2874at 3220.840 kb on - strand, within Pf1N1B4_2874at 3221.010 kb on + strand, within Pf1N1B4_2874

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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3,219,113 + Pf1N1B4_2872 0.36 +0.2
3,219,113 + Pf1N1B4_2872 0.36 -1.2
3,219,113 + Pf1N1B4_2872 0.36 +0.7
3,219,113 + Pf1N1B4_2872 0.36 -2.0
3,219,113 + Pf1N1B4_2872 0.36 -0.1
3,219,113 + Pf1N1B4_2872 0.36 -0.2
3,219,114 - Pf1N1B4_2872 0.37 +0.4
3,219,114 - Pf1N1B4_2872 0.37 -0.1
3,219,114 - Pf1N1B4_2872 0.37 -1.1
3,219,114 - Pf1N1B4_2872 0.37 -0.5
3,219,114 - Pf1N1B4_2872 0.37 -0.7
3,219,114 - Pf1N1B4_2872 0.37 +0.5
3,219,114 - Pf1N1B4_2872 0.37 -0.5
3,219,114 - Pf1N1B4_2872 0.37 +0.2
3,219,114 - Pf1N1B4_2872 0.37 +0.6
3,219,114 - Pf1N1B4_2872 0.37 +0.9
3,219,134 + Pf1N1B4_2872 0.38 +0.2
3,219,160 - Pf1N1B4_2872 0.39 +0.7
3,219,239 + Pf1N1B4_2872 0.45 +1.2
3,219,266 + Pf1N1B4_2872 0.46 -1.2
3,219,492 + Pf1N1B4_2872 0.61 +0.4
3,219,870 - Pf1N1B4_2872 0.85 +2.5
3,219,870 - Pf1N1B4_2872 0.85 +0.2
3,219,981 + -0.6
3,220,206 + Pf1N1B4_2873 0.73 -1.4
3,220,206 + Pf1N1B4_2873 0.73 -0.5
3,220,206 + Pf1N1B4_2873 0.73 -1.4
3,220,206 + Pf1N1B4_2873 0.73 -1.3
3,220,206 + Pf1N1B4_2873 0.73 -0.6
3,220,208 + Pf1N1B4_2873 0.75 +1.7
3,220,209 - Pf1N1B4_2873 0.76 -1.1
3,220,795 - Pf1N1B4_2874 0.23 -0.0
3,220,840 - Pf1N1B4_2874 0.25 +0.2
3,221,010 + Pf1N1B4_2874 0.33 -1.1

Or see this region's nucleotide sequence