Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2221

Experiment: butyrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	butyrate (C)
2,534,344	-		Pf1N1B4_2220	0.41	-0.2
2,534,344	-		Pf1N1B4_2220	0.41	+0.0
2,534,344	-		Pf1N1B4_2220	0.41	+1.1
2,534,397	+		Pf1N1B4_2220	0.45	+1.0
2,534,397	+		Pf1N1B4_2220	0.45	-2.2
2,534,397	+		Pf1N1B4_2220	0.45	-0.6
2,534,397	+		Pf1N1B4_2220	0.45	-0.2
2,534,398	-				+0.4
2,534,398	-		Pf1N1B4_2220	0.45	+0.7
2,534,398	-		Pf1N1B4_2220	0.45	+1.0
2,534,398	-		Pf1N1B4_2220	0.45	+1.4
2,534,449	-		Pf1N1B4_2220	0.49	-1.6
2,534,472	+		Pf1N1B4_2220	0.51	-0.8
2,534,472	+		Pf1N1B4_2220	0.51	+0.4
2,534,472	+		Pf1N1B4_2220	0.51	+0.7
2,534,472	+		Pf1N1B4_2220	0.51	-0.2
2,534,473	-		Pf1N1B4_2220	0.51	+1.4
2,534,473	-		Pf1N1B4_2220	0.51	-0.4
2,534,473	-		Pf1N1B4_2220	0.51	+0.4
2,534,473	-		Pf1N1B4_2220	0.51	-0.9
2,534,473	-		Pf1N1B4_2220	0.51	-2.4
2,534,534	+		Pf1N1B4_2220	0.55	+0.4
2,534,534	+		Pf1N1B4_2220	0.55	-1.2
2,534,534	+		Pf1N1B4_2220	0.55	-0.2
2,534,535	-		Pf1N1B4_2220	0.55	-0.4
2,534,535	-		Pf1N1B4_2220	0.55	+2.0
2,534,565	-		Pf1N1B4_2220	0.57	-0.0
2,534,565	-		Pf1N1B4_2220	0.57	-1.2
2,534,568	+		Pf1N1B4_2220	0.58	+1.0
2,534,568	+		Pf1N1B4_2220	0.58	+1.4
2,534,568	+		Pf1N1B4_2220	0.58	+0.1
2,534,568	+		Pf1N1B4_2220	0.58	+1.1
2,534,568	+		Pf1N1B4_2220	0.58	-1.6
2,534,568	+		Pf1N1B4_2220	0.58	-0.3
2,534,568	+		Pf1N1B4_2220	0.58	+0.1
2,534,568	+		Pf1N1B4_2220	0.58	-0.6
2,534,568	+		Pf1N1B4_2220	0.58	-0.2
2,534,568	+		Pf1N1B4_2220	0.58	-0.1
2,534,569	-		Pf1N1B4_2220	0.58	-0.4
2,534,569	-		Pf1N1B4_2220	0.58	+0.6
2,534,569	-		Pf1N1B4_2220	0.58	+0.4
2,534,838	-		Pf1N1B4_2220	0.78	+0.8
2,534,838	-		Pf1N1B4_2220	0.78	+1.4
2,534,859	+		Pf1N1B4_2220	0.79	-0.4
2,534,859	+		Pf1N1B4_2220	0.79	-0.2
2,534,860	-		Pf1N1B4_2220	0.79	-0.2
2,534,959	+		Pf1N1B4_2220	0.87	+2.0
2,534,959	+		Pf1N1B4_2220	0.87	+2.0
2,534,959	+		Pf1N1B4_2220	0.87	+2.0
2,534,959	+		Pf1N1B4_2220	0.87	+0.6
2,534,959	+		Pf1N1B4_2220	0.87	-1.0
2,534,960	-		Pf1N1B4_2220	0.87	-1.2
2,534,960	-		Pf1N1B4_2220	0.87	-0.9
2,534,960	-		Pf1N1B4_2220	0.87	+2.4
2,534,960	-		Pf1N1B4_2220	0.87	-0.2
2,534,961	+		Pf1N1B4_2220	0.87	+0.6
2,534,962	-		Pf1N1B4_2220	0.87	-1.4
2,534,962	-		Pf1N1B4_2220	0.87	-0.4
2,534,975	+		Pf1N1B4_2220	0.88	+0.6
2,534,976	-		Pf1N1B4_2220	0.88	-0.1
2,534,976	-		Pf1N1B4_2220	0.88	+0.1
2,535,015	+				-0.2
2,535,015	+				-0.2
2,535,015	+				+1.0
2,535,015	+				+1.1
2,535,015	+				+1.0
2,535,015	+				+0.4
2,535,016	-				+0.4
2,535,016	-				+0.4
2,535,016	-				-0.3
2,535,016	-				+0.2
2,535,016	-				+1.8
2,535,016	-				+2.0
2,535,016	-				-0.6
2,535,018	+				-1.2
2,535,019	-				+0.4
2,535,072	+				+0.4
2,535,083	+				+0.4
2,535,183	+				+3.0
2,535,184	-				-1.2
2,535,203	+				-0.2
2,535,203	+				-0.9
2,535,258	+				-0.8
2,535,279	+				+0.8
2,535,279	+				-0.9
2,535,279	+				-0.1
2,535,279	+				-0.5
2,535,280	-				+0.4
2,535,280	-				+1.4
2,535,280	-				+0.2
2,535,342	-				+2.2
2,535,684	+		Pf1N1B4_2221	0.35	-1.2
2,535,684	+		Pf1N1B4_2221	0.35	-1.2
2,535,684	+		Pf1N1B4_2221	0.35	-1.9
2,535,685	-		Pf1N1B4_2221	0.35	-2.6
2,535,685	-		Pf1N1B4_2221	0.35	-0.2
2,535,685	-		Pf1N1B4_2221	0.35	-1.2
2,535,685	-		Pf1N1B4_2221	0.35	-0.4
2,535,685	-		Pf1N1B4_2221	0.35	-0.2
2,535,750	+		Pf1N1B4_2221	0.42	+0.4
2,535,750	+		Pf1N1B4_2221	0.42	-0.4
2,535,750	+		Pf1N1B4_2221	0.42	-0.3
2,535,750	+		Pf1N1B4_2221	0.42	-0.6
2,535,751	-		Pf1N1B4_2221	0.42	+0.1
2,535,751	-		Pf1N1B4_2221	0.42	-0.6
2,535,751	-		Pf1N1B4_2221	0.42	-0.0
2,535,818	+		Pf1N1B4_2221	0.48	+0.4
2,535,821	-		Pf1N1B4_2221	0.49	-2.2
2,535,851	+		Pf1N1B4_2221	0.52	+0.5
2,535,852	-		Pf1N1B4_2221	0.52	+1.1
2,535,852	-		Pf1N1B4_2221	0.52	-0.4
2,535,951	+		Pf1N1B4_2221	0.62	+0.0
2,535,951	+		Pf1N1B4_2221	0.62	-0.3
2,535,951	+		Pf1N1B4_2221	0.62	+1.4
2,535,951	+		Pf1N1B4_2221	0.62	-0.8
2,535,952	-		Pf1N1B4_2221	0.62	-1.2
2,535,952	-		Pf1N1B4_2221	0.62	+1.0
2,535,952	-		Pf1N1B4_2221	0.62	-1.4
2,536,014	+		Pf1N1B4_2221	0.69	+1.0
2,536,170	+		Pf1N1B4_2221	0.84	-1.2
2,536,170	+		Pf1N1B4_2221	0.84	+1.4
2,536,171	-		Pf1N1B4_2221	0.85	+1.5
2,536,171	-		Pf1N1B4_2221	0.85	+0.4
2,536,171	-		Pf1N1B4_2221	0.85	-1.6
2,536,352	+				+0.4
2,536,353	-				-1.2
2,536,358	+				-1.8
2,536,358	+				+0.1
2,536,358	+				+0.9
2,536,358	+				+0.9
2,536,358	+				-0.6
2,536,358	+				-0.1
2,536,358	+				-1.3
2,536,358	+				+1.4
2,536,358	+				+1.0
2,536,358	+				-1.9
2,536,358	+				-2.3
2,536,358	+				+1.4
2,536,358	+				+1.9
2,536,358	+				+0.1
2,536,359	-				+0.4
2,536,359	-				+0.4
2,536,359	-				-0.1
2,536,359	-				+0.1
2,536,359	-				-1.6
2,536,359	-				-1.9
2,536,359	-				-0.8
2,536,359	-				+2.0
2,536,359	-				+0.9
2,536,359	-				+1.0
2,536,359	-				+0.6
2,536,359	-				+0.4
2,536,359	-				-0.4
2,536,412	-				+0.2
2,536,412	-				+0.4
2,536,439	-				-1.2
2,536,565	+		Pf1N1B4_2222	0.23	-0.3
2,536,565	+		Pf1N1B4_2222	0.23	+1.4
2,536,565	+		Pf1N1B4_2222	0.23	+0.4
2,536,565	+		Pf1N1B4_2222	0.23	-0.0
2,536,565	+		Pf1N1B4_2222	0.23	-0.2
2,536,565	+		Pf1N1B4_2222	0.23	-0.4
2,536,565	+		Pf1N1B4_2222	0.23	+1.4
2,536,565	+		Pf1N1B4_2222	0.23	+3.0
2,536,566	-		Pf1N1B4_2222	0.23	-0.2
2,536,566	-		Pf1N1B4_2222	0.23	-1.2
2,536,566	-		Pf1N1B4_2222	0.23	+0.7
2,536,566	-		Pf1N1B4_2222	0.23	-0.5
2,536,566	-		Pf1N1B4_2222	0.23	+0.8
2,536,566	-		Pf1N1B4_2222	0.23	-0.6
2,536,566	-		Pf1N1B4_2222	0.23	-0.9
2,536,566	-		Pf1N1B4_2222	0.23	-1.2
2,536,566	-		Pf1N1B4_2222	0.23	+0.4
2,536,598	+				-0.2
2,536,598	+		Pf1N1B4_2222	0.31	+0.4
2,536,598	+		Pf1N1B4_2222	0.31	-0.6
2,536,598	+		Pf1N1B4_2222	0.31	-1.4
2,536,598	+		Pf1N1B4_2222	0.31	+0.1
2,536,599	-		Pf1N1B4_2222	0.31	+0.4
2,536,631	+		Pf1N1B4_2222	0.39	+1.4
2,536,631	+				+0.4
2,536,631	+		Pf1N1B4_2222	0.39	+1.0
2,536,631	+		Pf1N1B4_2222	0.39	-0.2
2,536,631	+		Pf1N1B4_2222	0.39	-0.4
2,536,631	+		Pf1N1B4_2222	0.39	+0.5
2,536,631	+		Pf1N1B4_2222	0.39	+0.2
2,536,957	-				-0.4
2,537,020	+				+1.0
2,537,134	+		Pf1N1B4_2223	0.25	-0.3
2,537,135	-		Pf1N1B4_2223	0.26	-1.4
2,537,227	+		Pf1N1B4_2223	0.46	+0.4
2,537,227	+		Pf1N1B4_2223	0.46	-0.0
2,537,227	+		Pf1N1B4_2223	0.46	-0.4
2,537,228	-		Pf1N1B4_2223	0.46	+0.4
2,537,228	-		Pf1N1B4_2223	0.46	-1.2