Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06008

Experiment: 2-Deoxy-D-Ribose 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06007 and H281DRAFT_06008 are separated by 632 nucleotidesH281DRAFT_06008 and H281DRAFT_06009 are separated by 269 nucleotides H281DRAFT_06007: H281DRAFT_06007 - amino acid ABC transporter substrate-binding protein, PAAT family, at 7,629 to 8,360 _06007 H281DRAFT_06008: H281DRAFT_06008 - RNA polymerase, sigma 70 subunit, RpoD, at 8,993 to 11,227 _06008 H281DRAFT_06009: H281DRAFT_06009 - DNA primase, at 11,497 to 13,365 _06009 Position (kb) 8 9 10 11 12Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 8.053 kb on + strand, within H281DRAFT_06007at 8.053 kb on + strand, within H281DRAFT_06007at 8.054 kb on - strand, within H281DRAFT_06007at 8.054 kb on - strand, within H281DRAFT_06007at 8.054 kb on - strand, within H281DRAFT_06007at 8.054 kb on - strand, within H281DRAFT_06007at 8.193 kb on + strand, within H281DRAFT_06007at 8.193 kb on + strand, within H281DRAFT_06007at 8.194 kb on - strand, within H281DRAFT_06007at 8.220 kb on - strand, within H281DRAFT_06007at 8.402 kb on + strandat 8.403 kb on - strandat 8.836 kb on - strandat 8.853 kb on + strandat 8.853 kb on + strandat 8.853 kb on + strandat 8.854 kb on - strandat 8.854 kb on - strandat 8.893 kb on + strandat 8.894 kb on - strandat 8.894 kb on - strandat 8.894 kb on - strandat 8.896 kb on + strandat 8.896 kb on + strandat 8.964 kb on + strandat 8.965 kb on - strandat 8.965 kb on - strandat 8.968 kb on + strandat 8.969 kb on - strandat 8.969 kb on - strandat 8.975 kb on + strandat 8.976 kb on - strandat 8.976 kb on - strandat 9.262 kb on + strand, within H281DRAFT_06008at 9.263 kb on - strand, within H281DRAFT_06008at 9.485 kb on - strand, within H281DRAFT_06008at 9.565 kb on - strand, within H281DRAFT_06008at 9.657 kb on + strand, within H281DRAFT_06008at 9.658 kb on - strand, within H281DRAFT_06008at 9.861 kb on + strand, within H281DRAFT_06008at 9.971 kb on - strand, within H281DRAFT_06008at 9.971 kb on - strand, within H281DRAFT_06008at 10.119 kb on + strand, within H281DRAFT_06008at 10.120 kb on - strand, within H281DRAFT_06008at 10.551 kb on + strand, within H281DRAFT_06008at 10.551 kb on + strand, within H281DRAFT_06008at 10.551 kb on + strand, within H281DRAFT_06008at 10.551 kb on + strandat 10.551 kb on + strand, within H281DRAFT_06008at 10.698 kb on + strand, within H281DRAFT_06008at 10.699 kb on - strand, within H281DRAFT_06008at 11.013 kb on - strandat 11.103 kb on - strandat 11.192 kb on + strandat 11.287 kb on + strandat 11.287 kb on + strandat 11.287 kb on + strandat 11.325 kb on - strandat 11.392 kb on + strandat 11.467 kb on - strandat 11.470 kb on - strandat 11.471 kb on + strandat 11.471 kb on + strandat 11.472 kb on - strandat 11.498 kb on + strandat 11.498 kb on + strandat 11.499 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose 20 mM (C)
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8,053 + H281DRAFT_06007 0.58 -0.7
8,053 + H281DRAFT_06007 0.58 -0.1
8,054 - H281DRAFT_06007 0.58 -1.1
8,054 - H281DRAFT_06007 0.58 +0.4
8,054 - H281DRAFT_06007 0.58 +0.2
8,054 - H281DRAFT_06007 0.58 +0.5
8,193 + H281DRAFT_06007 0.77 +0.3
8,193 + H281DRAFT_06007 0.77 -0.2
8,194 - H281DRAFT_06007 0.77 +0.2
8,220 - H281DRAFT_06007 0.81 +0.5
8,402 + +0.6
8,403 - +1.4
8,836 - -0.5
8,853 + -0.5
8,853 + +0.2
8,853 + +1.0
8,854 - -1.0
8,854 - -0.1
8,893 + -0.7
8,894 - +0.1
8,894 - +0.1
8,894 - +0.2
8,896 + +0.8
8,896 + +0.6
8,964 + +0.1
8,965 - +0.3
8,965 - -0.1
8,968 + -0.3
8,969 - -0.4
8,969 - +0.5
8,975 + +0.1
8,976 - -0.2
8,976 - +0.5
9,262 + H281DRAFT_06008 0.12 -1.8
9,263 - H281DRAFT_06008 0.12 -1.2
9,485 - H281DRAFT_06008 0.22 -3.8
9,565 - H281DRAFT_06008 0.26 -0.6
9,657 + H281DRAFT_06008 0.30 -2.7
9,658 - H281DRAFT_06008 0.30 -2.6
9,861 + H281DRAFT_06008 0.39 -4.1
9,971 - H281DRAFT_06008 0.44 -0.1
9,971 - H281DRAFT_06008 0.44 -4.6
10,119 + H281DRAFT_06008 0.50 -4.2
10,120 - H281DRAFT_06008 0.50 -2.1
10,551 + H281DRAFT_06008 0.70 -1.9
10,551 + H281DRAFT_06008 0.70 -3.9
10,551 + H281DRAFT_06008 0.70 -2.6
10,551 + -0.0
10,551 + H281DRAFT_06008 0.70 -5.2
10,698 + H281DRAFT_06008 0.76 -1.1
10,699 - H281DRAFT_06008 0.76 -2.9
11,013 - -2.2
11,103 - +0.3
11,192 + -2.2
11,287 + -2.0
11,287 + -0.8
11,287 + -2.5
11,325 - +1.0
11,392 + -1.4
11,467 - -0.2
11,470 - +0.1
11,471 + -2.7
11,471 + -2.5
11,472 - +0.4
11,498 + -4.1
11,498 + -1.0
11,499 - +1.0

Or see this region's nucleotide sequence