Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05364

Experiment: 2-Deoxy-D-Ribose 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05362 and H281DRAFT_05363 are separated by 36 nucleotidesH281DRAFT_05363 and H281DRAFT_05364 are separated by 14 nucleotidesH281DRAFT_05364 and H281DRAFT_05365 are separated by 72 nucleotidesH281DRAFT_05365 and H281DRAFT_05366 are separated by 83 nucleotides H281DRAFT_05362: H281DRAFT_05362 - Tetratricopeptide repeat-containing protein, at 115,643 to 116,329 _05362 H281DRAFT_05363: H281DRAFT_05363 - type VI secretion system protein ImpB, at 116,366 to 116,914 _05363 H281DRAFT_05364: H281DRAFT_05364 - type VI secretion system protein ImpC, at 116,929 to 118,419 _05364 H281DRAFT_05365: H281DRAFT_05365 - type VI secretion system secreted protein Hcp, at 118,492 to 118,995 _05365 H281DRAFT_05366: H281DRAFT_05366 - type VI secretion system protein ImpF, at 119,079 to 119,558 _05366 Position (kb) 116 117 118 119Strain fitness (log2 ratio) -2 -1 0 1 2 3at 115.969 kb on - strand, within H281DRAFT_05362at 115.969 kb on - strand, within H281DRAFT_05362at 116.184 kb on + strand, within H281DRAFT_05362at 116.185 kb on - strand, within H281DRAFT_05362at 116.385 kb on + strandat 116.385 kb on + strandat 116.385 kb on + strandat 116.386 kb on - strandat 116.432 kb on + strand, within H281DRAFT_05363at 116.432 kb on + strand, within H281DRAFT_05363at 116.432 kb on + strand, within H281DRAFT_05363at 116.433 kb on - strand, within H281DRAFT_05363at 116.433 kb on - strand, within H281DRAFT_05363at 116.433 kb on - strand, within H281DRAFT_05363at 116.433 kb on - strand, within H281DRAFT_05363at 116.433 kb on - strand, within H281DRAFT_05363at 116.433 kb on - strand, within H281DRAFT_05363at 116.433 kb on - strand, within H281DRAFT_05363at 116.433 kb on - strand, within H281DRAFT_05363at 116.433 kb on - strand, within H281DRAFT_05363at 116.912 kb on + strandat 116.912 kb on + strandat 116.913 kb on - strandat 116.916 kb on + strandat 116.917 kb on - strandat 116.917 kb on - strandat 116.917 kb on - strandat 117.236 kb on - strand, within H281DRAFT_05364at 117.236 kb on - strand, within H281DRAFT_05364at 117.364 kb on + strand, within H281DRAFT_05364at 117.365 kb on - strand, within H281DRAFT_05364at 117.365 kb on - strand, within H281DRAFT_05364at 117.451 kb on + strand, within H281DRAFT_05364at 117.452 kb on - strand, within H281DRAFT_05364at 117.452 kb on - strand, within H281DRAFT_05364at 117.637 kb on + strand, within H281DRAFT_05364at 117.638 kb on - strand, within H281DRAFT_05364at 117.747 kb on + strand, within H281DRAFT_05364at 117.747 kb on + strand, within H281DRAFT_05364at 117.754 kb on + strand, within H281DRAFT_05364at 117.754 kb on + strand, within H281DRAFT_05364at 117.754 kb on + strand, within H281DRAFT_05364at 117.754 kb on + strand, within H281DRAFT_05364at 117.937 kb on - strand, within H281DRAFT_05364at 118.006 kb on + strand, within H281DRAFT_05364at 118.051 kb on + strand, within H281DRAFT_05364at 118.102 kb on + strand, within H281DRAFT_05364at 118.102 kb on + strand, within H281DRAFT_05364at 118.220 kb on - strand, within H281DRAFT_05364at 118.418 kb on - strandat 118.691 kb on + strand, within H281DRAFT_05365at 118.709 kb on - strand, within H281DRAFT_05365at 118.709 kb on - strand, within H281DRAFT_05365at 118.802 kb on + strand, within H281DRAFT_05365at 118.803 kb on - strand, within H281DRAFT_05365at 118.813 kb on + strand, within H281DRAFT_05365at 118.813 kb on + strand, within H281DRAFT_05365at 118.885 kb on + strand, within H281DRAFT_05365at 118.885 kb on + strand, within H281DRAFT_05365at 118.886 kb on - strand, within H281DRAFT_05365at 118.886 kb on - strand, within H281DRAFT_05365at 118.984 kb on + strandat 118.985 kb on - strandat 118.985 kb on - strandat 119.058 kb on + strandat 119.059 kb on - strandat 119.283 kb on + strand, within H281DRAFT_05366at 119.283 kb on + strand, within H281DRAFT_05366at 119.284 kb on - strand, within H281DRAFT_05366at 119.284 kb on - strand, within H281DRAFT_05366at 119.284 kb on - strand, within H281DRAFT_05366at 119.284 kb on - strand, within H281DRAFT_05366at 119.326 kb on - strand, within H281DRAFT_05366at 119.386 kb on + strand, within H281DRAFT_05366at 119.387 kb on - strand, within H281DRAFT_05366

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose 20 mM (C)
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115,969 - H281DRAFT_05362 0.47 -0.2
115,969 - H281DRAFT_05362 0.47 +0.7
116,184 + H281DRAFT_05362 0.79 +0.5
116,185 - H281DRAFT_05362 0.79 -0.5
116,385 + +0.9
116,385 + -0.2
116,385 + -0.6
116,386 - -0.2
116,432 + H281DRAFT_05363 0.12 +0.4
116,432 + H281DRAFT_05363 0.12 +0.5
116,432 + H281DRAFT_05363 0.12 +0.1
116,433 - H281DRAFT_05363 0.12 -0.1
116,433 - H281DRAFT_05363 0.12 -0.2
116,433 - H281DRAFT_05363 0.12 -0.2
116,433 - H281DRAFT_05363 0.12 +1.3
116,433 - H281DRAFT_05363 0.12 +1.2
116,433 - H281DRAFT_05363 0.12 -0.3
116,433 - H281DRAFT_05363 0.12 +0.6
116,433 - H281DRAFT_05363 0.12 -0.4
116,433 - H281DRAFT_05363 0.12 +0.3
116,912 + +0.2
116,912 + +0.5
116,913 - -1.4
116,916 + -0.0
116,917 - -0.1
116,917 - -0.4
116,917 - -1.2
117,236 - H281DRAFT_05364 0.21 +0.1
117,236 - H281DRAFT_05364 0.21 +1.3
117,364 + H281DRAFT_05364 0.29 +0.9
117,365 - H281DRAFT_05364 0.29 +1.2
117,365 - H281DRAFT_05364 0.29 +0.8
117,451 + H281DRAFT_05364 0.35 +0.1
117,452 - H281DRAFT_05364 0.35 -0.8
117,452 - H281DRAFT_05364 0.35 +0.7
117,637 + H281DRAFT_05364 0.47 -0.0
117,638 - H281DRAFT_05364 0.48 -0.2
117,747 + H281DRAFT_05364 0.55 +0.6
117,747 + H281DRAFT_05364 0.55 +0.1
117,754 + H281DRAFT_05364 0.55 +0.2
117,754 + H281DRAFT_05364 0.55 +1.2
117,754 + H281DRAFT_05364 0.55 +3.1
117,754 + H281DRAFT_05364 0.55 +0.6
117,937 - H281DRAFT_05364 0.68 +0.0
118,006 + H281DRAFT_05364 0.72 -0.1
118,051 + H281DRAFT_05364 0.75 -0.4
118,102 + H281DRAFT_05364 0.79 +0.3
118,102 + H281DRAFT_05364 0.79 -0.1
118,220 - H281DRAFT_05364 0.87 +0.0
118,418 - -0.1
118,691 + H281DRAFT_05365 0.39 +0.2
118,709 - H281DRAFT_05365 0.43 -0.6
118,709 - H281DRAFT_05365 0.43 -0.5
118,802 + H281DRAFT_05365 0.62 -0.9
118,803 - H281DRAFT_05365 0.62 -0.6
118,813 + H281DRAFT_05365 0.64 -1.3
118,813 + H281DRAFT_05365 0.64 +0.1
118,885 + H281DRAFT_05365 0.78 -0.0
118,885 + H281DRAFT_05365 0.78 +0.2
118,886 - H281DRAFT_05365 0.78 +0.1
118,886 - H281DRAFT_05365 0.78 +0.1
118,984 + -2.0
118,985 - -0.1
118,985 - +0.1
119,058 + -0.1
119,059 - +0.0
119,283 + H281DRAFT_05366 0.42 +0.9
119,283 + H281DRAFT_05366 0.42 -1.1
119,284 - H281DRAFT_05366 0.43 +1.0
119,284 - H281DRAFT_05366 0.43 +0.4
119,284 - H281DRAFT_05366 0.43 -0.2
119,284 - H281DRAFT_05366 0.43 -0.0
119,326 - H281DRAFT_05366 0.51 -2.0
119,386 + H281DRAFT_05366 0.64 -0.1
119,387 - H281DRAFT_05366 0.64 +0.0

Or see this region's nucleotide sequence