Experiment: 2-Deoxy-D-Ribose 20 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03057 and H281DRAFT_03058 are separated by 26 nucleotides H281DRAFT_03058 and H281DRAFT_03059 are separated by 25 nucleotides H281DRAFT_03059 and H281DRAFT_03060 are separated by 14 nucleotides H281DRAFT_03060 and H281DRAFT_03061 are separated by 303 nucleotides
H281DRAFT_03057: H281DRAFT_03057 - Permease of the drug/metabolite transporter (DMT) superfamily, at 89,038 to 90,099
_03057
H281DRAFT_03058: H281DRAFT_03058 - CheY chemotaxis protein or a CheY-like REC (receiver) domain, at 90,126 to 90,497
_03058
H281DRAFT_03059: H281DRAFT_03059 - two-component system, chemotaxis family, CheB/CheR fusion protein, at 90,523 to 93,663
_03059
H281DRAFT_03060: H281DRAFT_03060 - putative addiction module antidote protein, CC2985 family, at 93,678 to 93,899
_03060
H281DRAFT_03061: H281DRAFT_03061 - hypothetical protein, at 94,203 to 94,553
_03061
Position (kb) 90
91
92
93
94 Strain fitness (log2 ratio) -1
0
1
2 at 89.766 kb on + strand, within H281DRAFT_03057 at 89.785 kb on + strand, within H281DRAFT_03057 at 89.785 kb on + strand, within H281DRAFT_03057 at 89.928 kb on + strand, within H281DRAFT_03057 at 89.928 kb on + strand, within H281DRAFT_03057 at 89.928 kb on + strand at 90.021 kb on + strand at 90.142 kb on - strand at 90.250 kb on - strand, within H281DRAFT_03058 at 90.251 kb on + strand, within H281DRAFT_03058 at 90.545 kb on - strand at 90.943 kb on - strand, within H281DRAFT_03059 at 91.261 kb on - strand, within H281DRAFT_03059 at 91.640 kb on + strand, within H281DRAFT_03059 at 91.785 kb on + strand, within H281DRAFT_03059 at 91.787 kb on + strand, within H281DRAFT_03059 at 91.787 kb on + strand, within H281DRAFT_03059 at 91.787 kb on + strand, within H281DRAFT_03059 at 91.787 kb on + strand, within H281DRAFT_03059 at 91.787 kb on + strand, within H281DRAFT_03059 at 91.788 kb on - strand, within H281DRAFT_03059 at 92.025 kb on - strand, within H281DRAFT_03059 at 92.028 kb on - strand, within H281DRAFT_03059 at 92.325 kb on - strand, within H281DRAFT_03059 at 92.369 kb on + strand, within H281DRAFT_03059 at 92.377 kb on + strand, within H281DRAFT_03059 at 92.378 kb on - strand, within H281DRAFT_03059 at 92.378 kb on - strand, within H281DRAFT_03059 at 92.378 kb on - strand, within H281DRAFT_03059 at 92.480 kb on + strand, within H281DRAFT_03059 at 92.480 kb on + strand, within H281DRAFT_03059 at 92.481 kb on - strand at 92.481 kb on - strand, within H281DRAFT_03059 at 92.871 kb on - strand, within H281DRAFT_03059 at 92.941 kb on - strand, within H281DRAFT_03059 at 92.942 kb on + strand, within H281DRAFT_03059 at 93.061 kb on - strand, within H281DRAFT_03059 at 93.220 kb on - strand, within H281DRAFT_03059 at 93.220 kb on - strand, within H281DRAFT_03059 at 93.407 kb on - strand at 93.432 kb on - strand at 93.432 kb on - strand at 93.827 kb on + strand, within H281DRAFT_03060 at 93.936 kb on - strand at 94.092 kb on - strand at 94.250 kb on + strand, within H281DRAFT_03061 at 94.421 kb on + strand, within H281DRAFT_03061
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose 20 mM (C) remove 89,766 + H281DRAFT_03057 0.69 +1.1 89,785 + H281DRAFT_03057 0.70 +0.2 89,785 + H281DRAFT_03057 0.70 +0.9 89,928 + H281DRAFT_03057 0.84 +0.6 89,928 + H281DRAFT_03057 0.84 +0.0 89,928 + +2.4 90,021 + +0.9 90,142 - -0.5 90,250 - H281DRAFT_03058 0.33 -0.2 90,251 + H281DRAFT_03058 0.34 -0.3 90,545 - +0.8 90,943 - H281DRAFT_03059 0.13 -0.0 91,261 - H281DRAFT_03059 0.23 -0.5 91,640 + H281DRAFT_03059 0.36 +0.2 91,785 + H281DRAFT_03059 0.40 -0.8 91,787 + H281DRAFT_03059 0.40 -0.0 91,787 + H281DRAFT_03059 0.40 -0.6 91,787 + H281DRAFT_03059 0.40 +0.7 91,787 + H281DRAFT_03059 0.40 +0.5 91,787 + H281DRAFT_03059 0.40 +0.3 91,788 - H281DRAFT_03059 0.40 +0.8 92,025 - H281DRAFT_03059 0.48 -1.5 92,028 - H281DRAFT_03059 0.48 -0.9 92,325 - H281DRAFT_03059 0.57 -0.1 92,369 + H281DRAFT_03059 0.59 +2.2 92,377 + H281DRAFT_03059 0.59 +1.0 92,378 - H281DRAFT_03059 0.59 -0.3 92,378 - H281DRAFT_03059 0.59 +0.1 92,378 - H281DRAFT_03059 0.59 -0.1 92,480 + H281DRAFT_03059 0.62 +0.2 92,480 + H281DRAFT_03059 0.62 +1.1 92,481 - -1.5 92,481 - H281DRAFT_03059 0.62 +0.0 92,871 - H281DRAFT_03059 0.75 -0.9 92,941 - H281DRAFT_03059 0.77 +0.1 92,942 + H281DRAFT_03059 0.77 +0.8 93,061 - H281DRAFT_03059 0.81 +0.4 93,220 - H281DRAFT_03059 0.86 +0.9 93,220 - H281DRAFT_03059 0.86 -1.3 93,407 - +0.5 93,432 - +0.1 93,432 - -0.6 93,827 + H281DRAFT_03060 0.67 +0.3 93,936 - -0.5 94,092 - +0.5 94,250 + H281DRAFT_03061 0.13 +1.8 94,421 + H281DRAFT_03061 0.62 +0.4
Or see this region's nucleotide sequence