Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01630

Experiment: 2-Deoxy-D-Ribose 20 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_01629 and H281DRAFT_01630 are separated by 268 nucleotidesH281DRAFT_01630 and H281DRAFT_01631 are separated by 20 nucleotides H281DRAFT_01629: H281DRAFT_01629 - putative spermidine/putrescine transport system substrate-binding protein, at 508,219 to 509,388 _01629 H281DRAFT_01630: H281DRAFT_01630 - gluconolactonase, at 509,657 to 510,601 _01630 H281DRAFT_01631: H281DRAFT_01631 - Dihydrodipicolinate synthase/N-acetylneuraminate lyase, at 510,622 to 511,563 _01631 Position (kb) 509 510 511Strain fitness (log2 ratio) -2 -1 0 1at 508.841 kb on + strand, within H281DRAFT_01629at 508.842 kb on - strand, within H281DRAFT_01629at 508.950 kb on + strand, within H281DRAFT_01629at 508.952 kb on + strand, within H281DRAFT_01629at 508.953 kb on - strand, within H281DRAFT_01629at 508.970 kb on + strand, within H281DRAFT_01629at 509.013 kb on - strand, within H281DRAFT_01629at 509.013 kb on - strand, within H281DRAFT_01629at 509.114 kb on - strand, within H281DRAFT_01629at 509.123 kb on - strand, within H281DRAFT_01629at 509.123 kb on - strand, within H281DRAFT_01629at 509.148 kb on + strand, within H281DRAFT_01629at 509.192 kb on + strand, within H281DRAFT_01629at 509.347 kb on + strandat 509.348 kb on - strandat 509.348 kb on - strandat 509.409 kb on + strandat 509.495 kb on + strandat 509.625 kb on + strandat 509.688 kb on + strandat 509.689 kb on - strandat 509.782 kb on + strand, within H281DRAFT_01630at 509.782 kb on + strand, within H281DRAFT_01630at 509.809 kb on + strand, within H281DRAFT_01630at 509.809 kb on + strand, within H281DRAFT_01630at 509.809 kb on + strand, within H281DRAFT_01630at 509.809 kb on + strand, within H281DRAFT_01630at 509.810 kb on - strand, within H281DRAFT_01630at 509.810 kb on - strand, within H281DRAFT_01630at 509.810 kb on - strand, within H281DRAFT_01630at 509.810 kb on - strand, within H281DRAFT_01630at 510.012 kb on + strand, within H281DRAFT_01630at 510.012 kb on + strand, within H281DRAFT_01630at 510.013 kb on - strand, within H281DRAFT_01630at 510.013 kb on - strand, within H281DRAFT_01630at 510.013 kb on - strand, within H281DRAFT_01630at 510.013 kb on - strand, within H281DRAFT_01630at 510.151 kb on - strand, within H281DRAFT_01630at 510.151 kb on - strand, within H281DRAFT_01630at 510.346 kb on + strand, within H281DRAFT_01630at 510.836 kb on + strand, within H281DRAFT_01631at 510.837 kb on - strand, within H281DRAFT_01631at 511.067 kb on + strand, within H281DRAFT_01631at 511.127 kb on + strand, within H281DRAFT_01631at 511.128 kb on - strand, within H281DRAFT_01631at 511.128 kb on - strand, within H281DRAFT_01631at 511.128 kb on - strand, within H281DRAFT_01631at 511.145 kb on + strand, within H281DRAFT_01631at 511.146 kb on - strand, within H281DRAFT_01631at 511.215 kb on + strand, within H281DRAFT_01631at 511.444 kb on - strand, within H281DRAFT_01631at 511.564 kb on - strandat 511.586 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose 20 mM (C)
remove
508,841 + H281DRAFT_01629 0.53 -0.1
508,842 - H281DRAFT_01629 0.53 +0.6
508,950 + H281DRAFT_01629 0.62 -0.0
508,952 + H281DRAFT_01629 0.63 -0.9
508,953 - H281DRAFT_01629 0.63 -1.4
508,970 + H281DRAFT_01629 0.64 -0.1
509,013 - H281DRAFT_01629 0.68 +0.0
509,013 - H281DRAFT_01629 0.68 +0.5
509,114 - H281DRAFT_01629 0.76 +1.1
509,123 - H281DRAFT_01629 0.77 +0.6
509,123 - H281DRAFT_01629 0.77 +0.9
509,148 + H281DRAFT_01629 0.79 -1.2
509,192 + H281DRAFT_01629 0.83 +0.4
509,347 + +0.2
509,348 - +0.6
509,348 - +0.6
509,409 + -0.4
509,495 + +0.7
509,625 + +1.1
509,688 + -0.5
509,689 - +0.4
509,782 + H281DRAFT_01630 0.13 +0.4
509,782 + H281DRAFT_01630 0.13 -0.8
509,809 + H281DRAFT_01630 0.16 +0.2
509,809 + H281DRAFT_01630 0.16 +0.1
509,809 + H281DRAFT_01630 0.16 -0.1
509,809 + H281DRAFT_01630 0.16 -0.2
509,810 - H281DRAFT_01630 0.16 -1.0
509,810 - H281DRAFT_01630 0.16 +0.4
509,810 - H281DRAFT_01630 0.16 +0.3
509,810 - H281DRAFT_01630 0.16 +0.1
510,012 + H281DRAFT_01630 0.38 +0.1
510,012 + H281DRAFT_01630 0.38 -0.5
510,013 - H281DRAFT_01630 0.38 -0.6
510,013 - H281DRAFT_01630 0.38 -0.2
510,013 - H281DRAFT_01630 0.38 -0.9
510,013 - H281DRAFT_01630 0.38 +0.9
510,151 - H281DRAFT_01630 0.52 +0.3
510,151 - H281DRAFT_01630 0.52 -0.1
510,346 + H281DRAFT_01630 0.73 -0.7
510,836 + H281DRAFT_01631 0.23 +0.0
510,837 - H281DRAFT_01631 0.23 -1.6
511,067 + H281DRAFT_01631 0.47 -0.1
511,127 + H281DRAFT_01631 0.54 +0.7
511,128 - H281DRAFT_01631 0.54 +0.2
511,128 - H281DRAFT_01631 0.54 -0.0
511,128 - H281DRAFT_01631 0.54 -0.3
511,145 + H281DRAFT_01631 0.56 -0.8
511,146 - H281DRAFT_01631 0.56 -2.5
511,215 + H281DRAFT_01631 0.63 -0.2
511,444 - H281DRAFT_01631 0.87 +1.6
511,564 - -0.1
511,586 + +0.2

Or see this region's nucleotide sequence