Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00466

Experiment: 2-Deoxy-D-Ribose 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00465 and H281DRAFT_00466 are separated by 266 nucleotidesH281DRAFT_00466 and H281DRAFT_00467 are separated by 85 nucleotides H281DRAFT_00465: H281DRAFT_00465 - PAS/PAC sensor signal transduction histidine kinase /multi-sensor signal transduction histidine kinase, at 518,384 to 520,909 _00465 H281DRAFT_00466: H281DRAFT_00466 - pyruvate dehydrogenase E1 component, at 521,176 to 523,872 _00466 H281DRAFT_00467: H281DRAFT_00467 - pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase), at 523,958 to 525,646 _00467 Position (kb) 521 522 523 524Strain fitness (log2 ratio) -2 -1 0 1at 520.222 kb on - strand, within H281DRAFT_00465at 520.912 kb on + strandat 520.913 kb on - strandat 520.925 kb on - strandat 520.925 kb on - strandat 520.925 kb on - strandat 520.925 kb on - strandat 520.925 kb on - strandat 520.977 kb on + strandat 520.977 kb on + strandat 520.978 kb on - strandat 521.094 kb on + strandat 521.094 kb on + strandat 521.095 kb on - strandat 521.095 kb on - strandat 521.158 kb on + strandat 521.160 kb on + strandat 523.870 kb on + strandat 524.000 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose 20 mM (C)
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520,222 - H281DRAFT_00465 0.73 -2.4
520,912 + +0.6
520,913 - -0.4
520,925 - +0.5
520,925 - +0.7
520,925 - -0.8
520,925 - -0.1
520,925 - -0.4
520,977 + -0.3
520,977 + +0.2
520,978 - -0.7
521,094 + +0.6
521,094 + +0.1
521,095 - +1.4
521,095 - -0.1
521,158 + +1.6
521,160 + -1.2
523,870 + +0.7
524,000 + -1.4

Or see this region's nucleotide sequence