Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00036

Experiment: 2-Deoxy-D-Ribose 20 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_00035 and H281DRAFT_00036 are separated by 549 nucleotidesH281DRAFT_00036 and H281DRAFT_00037 are separated by 916 nucleotides H281DRAFT_00035: H281DRAFT_00035 - Phenylpyruvate tautomerase PptA, 4-oxalocrotonate tautomerase family, at 37,026 to 37,439 _00035 H281DRAFT_00036: H281DRAFT_00036 - DNA-binding winged helix-turn-helix (wHTH) domain-containing protein, at 37,989 to 40,754 _00036 H281DRAFT_00037: H281DRAFT_00037 - NAD(P)H dehydrogenase (quinone), at 41,671 to 42,525 _00037 Position (kb) 37 38 39 40 41Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 37.027 kb on + strandat 37.028 kb on - strandat 37.069 kb on + strand, within H281DRAFT_00035at 37.069 kb on + strand, within H281DRAFT_00035at 37.069 kb on + strand, within H281DRAFT_00035at 37.070 kb on - strand, within H281DRAFT_00035at 37.070 kb on - strand, within H281DRAFT_00035at 37.070 kb on - strand, within H281DRAFT_00035at 37.070 kb on - strand, within H281DRAFT_00035at 37.093 kb on - strand, within H281DRAFT_00035at 37.111 kb on + strand, within H281DRAFT_00035at 37.244 kb on + strand, within H281DRAFT_00035at 37.267 kb on + strand, within H281DRAFT_00035at 37.268 kb on - strand, within H281DRAFT_00035at 37.489 kb on + strandat 37.544 kb on + strandat 37.545 kb on - strandat 37.566 kb on - strandat 37.566 kb on - strandat 37.805 kb on - strandat 37.807 kb on + strandat 37.807 kb on + strandat 37.874 kb on + strandat 37.939 kb on + strandat 38.089 kb on - strandat 38.121 kb on + strandat 38.121 kb on + strandat 38.121 kb on + strandat 38.122 kb on - strandat 38.122 kb on - strandat 38.127 kb on + strandat 38.145 kb on + strandat 38.148 kb on + strandat 38.296 kb on + strand, within H281DRAFT_00036at 38.297 kb on - strand, within H281DRAFT_00036at 38.297 kb on - strand, within H281DRAFT_00036at 38.482 kb on - strand, within H281DRAFT_00036at 38.482 kb on - strand, within H281DRAFT_00036at 38.507 kb on - strand, within H281DRAFT_00036at 38.597 kb on - strand, within H281DRAFT_00036at 38.611 kb on + strand, within H281DRAFT_00036at 38.612 kb on - strand, within H281DRAFT_00036at 38.612 kb on - strand, within H281DRAFT_00036at 38.648 kb on - strand, within H281DRAFT_00036at 38.666 kb on - strand, within H281DRAFT_00036at 38.896 kb on - strand, within H281DRAFT_00036at 38.896 kb on - strand, within H281DRAFT_00036at 38.896 kb on - strand, within H281DRAFT_00036at 38.899 kb on + strand, within H281DRAFT_00036at 38.900 kb on - strand, within H281DRAFT_00036at 38.900 kb on - strand, within H281DRAFT_00036at 38.930 kb on - strand, within H281DRAFT_00036at 38.930 kb on - strand, within H281DRAFT_00036at 38.946 kb on - strand, within H281DRAFT_00036at 39.018 kb on - strand, within H281DRAFT_00036at 39.032 kb on - strand, within H281DRAFT_00036at 39.144 kb on + strand, within H281DRAFT_00036at 39.145 kb on - strand, within H281DRAFT_00036at 39.212 kb on + strand, within H281DRAFT_00036at 39.213 kb on - strand, within H281DRAFT_00036at 39.413 kb on - strand, within H281DRAFT_00036at 39.413 kb on - strand, within H281DRAFT_00036at 39.413 kb on - strand, within H281DRAFT_00036at 39.444 kb on + strand, within H281DRAFT_00036at 39.445 kb on - strand, within H281DRAFT_00036at 39.445 kb on - strand, within H281DRAFT_00036at 39.445 kb on - strand, within H281DRAFT_00036at 39.467 kb on + strand, within H281DRAFT_00036at 39.468 kb on - strand, within H281DRAFT_00036at 39.468 kb on - strand, within H281DRAFT_00036at 39.468 kb on - strand, within H281DRAFT_00036at 39.516 kb on + strand, within H281DRAFT_00036at 39.561 kb on + strand, within H281DRAFT_00036at 39.562 kb on - strand, within H281DRAFT_00036at 39.562 kb on - strand, within H281DRAFT_00036at 39.562 kb on - strand, within H281DRAFT_00036at 39.562 kb on - strand, within H281DRAFT_00036at 39.675 kb on + strand, within H281DRAFT_00036at 39.676 kb on - strand, within H281DRAFT_00036at 39.676 kb on - strand, within H281DRAFT_00036at 39.821 kb on - strand, within H281DRAFT_00036at 39.855 kb on - strand, within H281DRAFT_00036at 40.146 kb on + strand, within H281DRAFT_00036at 40.146 kb on + strand, within H281DRAFT_00036at 40.147 kb on - strand, within H281DRAFT_00036at 40.153 kb on - strand, within H281DRAFT_00036at 40.153 kb on - strand, within H281DRAFT_00036at 40.365 kb on - strand, within H281DRAFT_00036at 40.478 kb on - strandat 40.478 kb on - strandat 40.559 kb on + strandat 40.757 kb on + strandat 40.758 kb on - strandat 41.042 kb on - strandat 41.107 kb on + strandat 41.108 kb on - strandat 41.257 kb on + strandat 41.257 kb on + strandat 41.257 kb on + strandat 41.258 kb on - strandat 41.261 kb on + strandat 41.262 kb on - strandat 41.332 kb on + strandat 41.333 kb on - strandat 41.333 kb on - strandat 41.357 kb on - strandat 41.364 kb on + strandat 41.365 kb on - strandat 41.401 kb on - strandat 41.455 kb on - strandat 41.455 kb on - strandat 41.502 kb on + strandat 41.567 kb on + strandat 41.568 kb on - strandat 41.628 kb on - strandat 41.716 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose 20 mM (C)
remove
37,027 + -1.4
37,028 - -0.9
37,069 + H281DRAFT_00035 0.10 -0.3
37,069 + H281DRAFT_00035 0.10 +0.3
37,069 + H281DRAFT_00035 0.10 -1.0
37,070 - H281DRAFT_00035 0.11 +0.3
37,070 - H281DRAFT_00035 0.11 -0.8
37,070 - H281DRAFT_00035 0.11 +0.3
37,070 - H281DRAFT_00035 0.11 +1.2
37,093 - H281DRAFT_00035 0.16 +0.2
37,111 + H281DRAFT_00035 0.21 +0.4
37,244 + H281DRAFT_00035 0.53 +0.3
37,267 + H281DRAFT_00035 0.58 -0.6
37,268 - H281DRAFT_00035 0.58 +0.6
37,489 + +0.1
37,544 + -0.2
37,545 - +2.1
37,566 - +0.3
37,566 - +0.1
37,805 - -0.6
37,807 + -0.7
37,807 + +0.8
37,874 + -0.4
37,939 + +0.2
38,089 - +0.8
38,121 + -0.1
38,121 + -0.9
38,121 + -0.2
38,122 - -1.0
38,122 - -1.6
38,127 + -0.3
38,145 + -0.1
38,148 + -0.1
38,296 + H281DRAFT_00036 0.11 +0.1
38,297 - H281DRAFT_00036 0.11 -0.1
38,297 - H281DRAFT_00036 0.11 -0.4
38,482 - H281DRAFT_00036 0.18 -0.5
38,482 - H281DRAFT_00036 0.18 -0.9
38,507 - H281DRAFT_00036 0.19 -0.3
38,597 - H281DRAFT_00036 0.22 +0.0
38,611 + H281DRAFT_00036 0.22 -1.3
38,612 - H281DRAFT_00036 0.23 +1.6
38,612 - H281DRAFT_00036 0.23 -0.4
38,648 - H281DRAFT_00036 0.24 -0.2
38,666 - H281DRAFT_00036 0.24 +0.2
38,896 - H281DRAFT_00036 0.33 +0.3
38,896 - H281DRAFT_00036 0.33 -0.8
38,896 - H281DRAFT_00036 0.33 +1.2
38,899 + H281DRAFT_00036 0.33 +0.7
38,900 - H281DRAFT_00036 0.33 +0.4
38,900 - H281DRAFT_00036 0.33 -0.2
38,930 - H281DRAFT_00036 0.34 -0.8
38,930 - H281DRAFT_00036 0.34 -0.2
38,946 - H281DRAFT_00036 0.35 -0.6
39,018 - H281DRAFT_00036 0.37 +0.3
39,032 - H281DRAFT_00036 0.38 -1.2
39,144 + H281DRAFT_00036 0.42 +0.5
39,145 - H281DRAFT_00036 0.42 -0.7
39,212 + H281DRAFT_00036 0.44 +2.9
39,213 - H281DRAFT_00036 0.44 +0.0
39,413 - H281DRAFT_00036 0.51 +0.2
39,413 - H281DRAFT_00036 0.51 +1.7
39,413 - H281DRAFT_00036 0.51 +0.7
39,444 + H281DRAFT_00036 0.53 -0.3
39,445 - H281DRAFT_00036 0.53 -1.0
39,445 - H281DRAFT_00036 0.53 +0.8
39,445 - H281DRAFT_00036 0.53 +0.9
39,467 + H281DRAFT_00036 0.53 -0.3
39,468 - H281DRAFT_00036 0.53 +0.0
39,468 - H281DRAFT_00036 0.53 -0.6
39,468 - H281DRAFT_00036 0.53 +0.0
39,516 + H281DRAFT_00036 0.55 -0.3
39,561 + H281DRAFT_00036 0.57 +0.7
39,562 - H281DRAFT_00036 0.57 +0.1
39,562 - H281DRAFT_00036 0.57 -3.1
39,562 - H281DRAFT_00036 0.57 -0.3
39,562 - H281DRAFT_00036 0.57 +0.2
39,675 + H281DRAFT_00036 0.61 +0.0
39,676 - H281DRAFT_00036 0.61 -0.5
39,676 - H281DRAFT_00036 0.61 -0.0
39,821 - H281DRAFT_00036 0.66 -0.7
39,855 - H281DRAFT_00036 0.67 +0.8
40,146 + H281DRAFT_00036 0.78 -0.8
40,146 + H281DRAFT_00036 0.78 -0.0
40,147 - H281DRAFT_00036 0.78 +0.1
40,153 - H281DRAFT_00036 0.78 +0.1
40,153 - H281DRAFT_00036 0.78 +0.2
40,365 - H281DRAFT_00036 0.86 -0.2
40,478 - +0.2
40,478 - -0.5
40,559 + +0.7
40,757 + -0.0
40,758 - -0.7
41,042 - -1.0
41,107 + -0.5
41,108 - -1.0
41,257 + -0.7
41,257 + -1.4
41,257 + -0.6
41,258 - -0.6
41,261 + +0.7
41,262 - -0.0
41,332 + -0.4
41,333 - -0.3
41,333 - -0.8
41,357 - +0.9
41,364 + -0.1
41,365 - -0.4
41,401 - -0.2
41,455 - +0.4
41,455 - +0.1
41,502 + -0.3
41,567 + -0.3
41,568 - -0.5
41,628 - -1.7
41,716 - -1.7

Or see this region's nucleotide sequence