Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00023

Experiment: 2-Deoxy-D-Ribose 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00022 and H281DRAFT_00023 are separated by 329 nucleotidesH281DRAFT_00023 and H281DRAFT_00024 are separated by 911 nucleotides H281DRAFT_00022: H281DRAFT_00022 - Transposase IS66 family protein, at 23,204 to 23,734 _00022 H281DRAFT_00023: H281DRAFT_00023 - Glutathione S-transferase, at 24,064 to 24,765 _00023 H281DRAFT_00024: H281DRAFT_00024 - protein of unknown function (DUF4148), at 25,677 to 26,003 _00024 Position (kb) 24 25Strain fitness (log2 ratio) -1 0 1 2at 23.207 kb on + strandat 23.394 kb on + strand, within H281DRAFT_00022at 23.395 kb on - strand, within H281DRAFT_00022at 23.422 kb on + strand, within H281DRAFT_00022at 23.463 kb on - strand, within H281DRAFT_00022at 23.463 kb on - strand, within H281DRAFT_00022at 23.660 kb on - strand, within H281DRAFT_00022at 23.682 kb on + strandat 23.682 kb on + strandat 23.682 kb on + strandat 23.682 kb on + strandat 23.682 kb on + strandat 23.682 kb on + strandat 23.683 kb on - strandat 23.683 kb on - strandat 23.683 kb on - strandat 23.733 kb on - strandat 23.840 kb on - strandat 24.156 kb on - strand, within H281DRAFT_00023at 24.479 kb on - strand, within H281DRAFT_00023at 24.502 kb on - strand, within H281DRAFT_00023at 24.513 kb on - strand, within H281DRAFT_00023at 24.819 kb on + strandat 24.840 kb on - strandat 24.867 kb on - strandat 24.884 kb on - strandat 24.884 kb on - strandat 25.055 kb on + strandat 25.056 kb on - strandat 25.168 kb on + strandat 25.193 kb on - strandat 25.244 kb on + strandat 25.579 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose 20 mM (C)
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23,207 + +0.4
23,394 + H281DRAFT_00022 0.36 -0.3
23,395 - H281DRAFT_00022 0.36 +0.2
23,422 + H281DRAFT_00022 0.41 +0.6
23,463 - H281DRAFT_00022 0.49 +0.3
23,463 - H281DRAFT_00022 0.49 +2.3
23,660 - H281DRAFT_00022 0.86 -1.5
23,682 + +1.1
23,682 + +0.2
23,682 + -0.4
23,682 + +0.7
23,682 + -0.1
23,682 + +0.2
23,683 - -0.1
23,683 - -1.3
23,683 - -0.2
23,733 - -0.1
23,840 - +0.1
24,156 - H281DRAFT_00023 0.13 +0.0
24,479 - H281DRAFT_00023 0.59 -0.6
24,502 - H281DRAFT_00023 0.62 -0.6
24,513 - H281DRAFT_00023 0.64 +0.1
24,819 + -0.2
24,840 - +0.8
24,867 - -0.3
24,884 - +0.1
24,884 - -0.4
25,055 + -0.0
25,056 - -0.4
25,168 + +0.4
25,193 - +0.7
25,244 + +0.7
25,579 - +0.0

Or see this region's nucleotide sequence