Strain Fitness in Dechlorosoma suillum PS around Dsui_3522

Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3521 and Dsui_3522 are separated by 16 nucleotidesDsui_3522 and Dsui_3523 are separated by 77 nucleotidesDsui_3523 and Dsui_3524 overlap by 17 nucleotides Dsui_3521: Dsui_3521 - membrane-fusion protein, at 3,787,416 to 3,788,567 _3521 Dsui_3522: Dsui_3522 - outer membrane protein, at 3,788,584 to 3,789,840 _3522 Dsui_3523: Dsui_3523 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 3,789,918 to 3,790,628 _3523 Dsui_3524: Dsui_3524 - signal transduction histidine kinase, at 3,790,612 to 3,792,000 _3524 Position (kb) 3788 3789 3790Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 3787.757 kb on - strand, within Dsui_3521at 3787.757 kb on - strand, within Dsui_3521at 3787.775 kb on + strandat 3787.783 kb on - strand, within Dsui_3521at 3787.817 kb on + strand, within Dsui_3521at 3787.825 kb on - strand, within Dsui_3521at 3788.034 kb on + strandat 3788.082 kb on - strand, within Dsui_3521at 3788.096 kb on + strand, within Dsui_3521at 3788.121 kb on - strand, within Dsui_3521at 3788.169 kb on - strand, within Dsui_3521at 3788.207 kb on - strand, within Dsui_3521at 3788.215 kb on + strandat 3788.238 kb on + strandat 3788.548 kb on - strandat 3788.552 kb on + strandat 3788.842 kb on - strand, within Dsui_3522at 3788.846 kb on - strand, within Dsui_3522at 3788.888 kb on + strandat 3788.896 kb on - strand, within Dsui_3522at 3788.903 kb on + strandat 3788.940 kb on + strandat 3789.079 kb on - strand, within Dsui_3522at 3789.363 kb on - strand, within Dsui_3522at 3789.419 kb on - strandat 3789.513 kb on + strand, within Dsui_3522at 3789.513 kb on + strandat 3789.568 kb on - strand, within Dsui_3522at 3789.694 kb on + strand, within Dsui_3522at 3789.743 kb on + strandat 3789.745 kb on - strandat 3789.745 kb on - strandat 3789.747 kb on + strandat 3789.751 kb on - strandat 3789.753 kb on + strandat 3789.818 kb on - strandat 3789.820 kb on + strandat 3789.914 kb on - strandat 3789.973 kb on - strandat 3790.048 kb on + strand, within Dsui_3523at 3790.071 kb on - strand, within Dsui_3523at 3790.071 kb on - strand, within Dsui_3523at 3790.120 kb on + strand, within Dsui_3523at 3790.138 kb on - strand, within Dsui_3523at 3790.163 kb on - strandat 3790.165 kb on + strand, within Dsui_3523at 3790.198 kb on - strand, within Dsui_3523at 3790.357 kb on + strand, within Dsui_3523at 3790.426 kb on + strand, within Dsui_3523at 3790.443 kb on - strand, within Dsui_3523at 3790.482 kb on - strandat 3790.483 kb on - strand, within Dsui_3523at 3790.518 kb on - strand, within Dsui_3523at 3790.602 kb on - strandat 3790.622 kb on + strandat 3790.635 kb on - strandat 3790.671 kb on + strandat 3790.757 kb on - strandat 3790.760 kb on + strand, within Dsui_3524at 3790.768 kb on - strand, within Dsui_3524at 3790.772 kb on - strand, within Dsui_3524

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Per-strain Table

Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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3,787,757 - Dsui_3521 0.30 -4.7
3,787,757 - Dsui_3521 0.30 -4.1
3,787,775 + -2.4
3,787,783 - Dsui_3521 0.32 -4.4
3,787,817 + Dsui_3521 0.35 -3.5
3,787,825 - Dsui_3521 0.36 -6.0
3,788,034 + -1.5
3,788,082 - Dsui_3521 0.58 -3.3
3,788,096 + Dsui_3521 0.59 -3.4
3,788,121 - Dsui_3521 0.61 -1.2
3,788,169 - Dsui_3521 0.65 -1.6
3,788,207 - Dsui_3521 0.69 -3.2
3,788,215 + -3.4
3,788,238 + -2.2
3,788,548 - -4.6
3,788,552 + -2.8
3,788,842 - Dsui_3522 0.21 -1.3
3,788,846 - Dsui_3522 0.21 -1.3
3,788,888 + -2.6
3,788,896 - Dsui_3522 0.25 +0.1
3,788,903 + -0.8
3,788,940 + -2.6
3,789,079 - Dsui_3522 0.39 -2.0
3,789,363 - Dsui_3522 0.62 -4.4
3,789,419 - -3.0
3,789,513 + Dsui_3522 0.74 -4.1
3,789,513 + -2.1
3,789,568 - Dsui_3522 0.78 -1.2
3,789,694 + Dsui_3522 0.88 -1.9
3,789,743 + -0.5
3,789,745 - +0.0
3,789,745 - -3.2
3,789,747 + -1.7
3,789,751 - -0.0
3,789,753 + -2.9
3,789,818 - -5.9
3,789,820 + -2.6
3,789,914 - -4.2
3,789,973 - +0.1
3,790,048 + Dsui_3523 0.18 -2.2
3,790,071 - Dsui_3523 0.22 -3.7
3,790,071 - Dsui_3523 0.22 -0.4
3,790,120 + Dsui_3523 0.28 -2.6
3,790,138 - Dsui_3523 0.31 -3.8
3,790,163 - -3.5
3,790,165 + Dsui_3523 0.35 -2.2
3,790,198 - Dsui_3523 0.39 -1.0
3,790,357 + Dsui_3523 0.62 -1.8
3,790,426 + Dsui_3523 0.71 -2.8
3,790,443 - Dsui_3523 0.74 -2.7
3,790,482 - -1.5
3,790,483 - Dsui_3523 0.79 -2.6
3,790,518 - Dsui_3523 0.84 -3.5
3,790,602 - -3.0
3,790,622 + -1.8
3,790,635 - -0.5
3,790,671 + -0.7
3,790,757 - -2.6
3,790,760 + Dsui_3524 0.11 -2.7
3,790,768 - Dsui_3524 0.11 -2.9
3,790,772 - Dsui_3524 0.12 -4.3

Or see this region's nucleotide sequence