Strain Fitness in Dechlorosoma suillum PS around Dsui_3442

Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3441 and Dsui_3442 are separated by 26 nucleotidesDsui_3442 and Dsui_3443 are separated by 82 nucleotides Dsui_3441: Dsui_3441 - cation/multidrug efflux pump, at 3,696,299 to 3,699,550 _3441 Dsui_3442: Dsui_3442 - NADH dehydrogenase, FAD-containing subunit, at 3,699,577 to 3,700,851 _3442 Dsui_3443: Dsui_3443 - RND family efflux transporter, MFP subunit, at 3,700,934 to 3,702,013 _3443 Position (kb) 3699 3700 3701Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3698.598 kb on - strand, within Dsui_3441at 3698.720 kb on - strand, within Dsui_3441at 3698.722 kb on + strand, within Dsui_3441at 3698.730 kb on - strand, within Dsui_3441at 3698.836 kb on + strandat 3698.880 kb on - strand, within Dsui_3441at 3699.169 kb on + strandat 3699.315 kb on - strandat 3699.415 kb on - strandat 3699.555 kb on + strandat 3699.606 kb on + strandat 3699.686 kb on + strandat 3699.751 kb on - strandat 3699.833 kb on - strand, within Dsui_3442at 3699.895 kb on + strandat 3700.034 kb on - strandat 3700.046 kb on - strand, within Dsui_3442at 3700.169 kb on - strand, within Dsui_3442at 3700.184 kb on - strandat 3700.227 kb on - strand, within Dsui_3442at 3700.257 kb on + strand, within Dsui_3442at 3700.265 kb on - strand, within Dsui_3442at 3700.286 kb on - strand, within Dsui_3442at 3700.302 kb on - strand, within Dsui_3442at 3700.302 kb on - strand, within Dsui_3442at 3700.404 kb on + strand, within Dsui_3442at 3700.530 kb on - strand, within Dsui_3442at 3700.635 kb on + strandat 3700.637 kb on - strand, within Dsui_3442at 3700.694 kb on + strandat 3700.718 kb on - strand, within Dsui_3442at 3700.909 kb on + strandat 3701.078 kb on + strand, within Dsui_3443at 3701.086 kb on - strand, within Dsui_3443at 3701.242 kb on - strand, within Dsui_3443at 3701.373 kb on - strandat 3701.469 kb on - strandat 3701.524 kb on - strand, within Dsui_3443at 3701.568 kb on + strandat 3701.574 kb on + strand, within Dsui_3443at 3701.579 kb on + strand, within Dsui_3443at 3701.587 kb on - strandat 3701.587 kb on - strand, within Dsui_3443at 3701.625 kb on - strand, within Dsui_3443at 3701.651 kb on + strand, within Dsui_3443

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Per-strain Table

Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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3,698,598 - Dsui_3441 0.71 -3.8
3,698,720 - Dsui_3441 0.74 -3.0
3,698,722 + Dsui_3441 0.75 -2.1
3,698,730 - Dsui_3441 0.75 -3.5
3,698,836 + -2.9
3,698,880 - Dsui_3441 0.79 -2.9
3,699,169 + -2.6
3,699,315 - -2.0
3,699,415 - -4.3
3,699,555 + -1.2
3,699,606 + -0.9
3,699,686 + -0.8
3,699,751 - -2.4
3,699,833 - Dsui_3442 0.20 -1.5
3,699,895 + -3.1
3,700,034 - -0.9
3,700,046 - Dsui_3442 0.37 -2.6
3,700,169 - Dsui_3442 0.46 -1.0
3,700,184 - -0.9
3,700,227 - Dsui_3442 0.51 -1.9
3,700,257 + Dsui_3442 0.53 +0.6
3,700,265 - Dsui_3442 0.54 -0.4
3,700,286 - Dsui_3442 0.56 -0.4
3,700,302 - Dsui_3442 0.57 -1.0
3,700,302 - Dsui_3442 0.57 -2.1
3,700,404 + Dsui_3442 0.65 -0.2
3,700,530 - Dsui_3442 0.75 +0.9
3,700,635 + -2.5
3,700,637 - Dsui_3442 0.83 -0.9
3,700,694 + -0.7
3,700,718 - Dsui_3442 0.89 -1.4
3,700,909 + +0.1
3,701,078 + Dsui_3443 0.13 -3.3
3,701,086 - Dsui_3443 0.14 -3.4
3,701,242 - Dsui_3443 0.29 -2.0
3,701,373 - -5.0
3,701,469 - -2.8
3,701,524 - Dsui_3443 0.55 -2.2
3,701,568 + -1.9
3,701,574 + Dsui_3443 0.59 -4.3
3,701,579 + Dsui_3443 0.60 -3.1
3,701,587 - -2.9
3,701,587 - Dsui_3443 0.60 -2.1
3,701,625 - Dsui_3443 0.64 -2.1
3,701,651 + Dsui_3443 0.66 -3.4

Or see this region's nucleotide sequence