Strain Fitness in Dechlorosoma suillum PS around Dsui_3372

Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_3371 and Dsui_3372 are separated by 154 nucleotidesDsui_3372 and Dsui_3373 are separated by 16 nucleotides Dsui_3371: Dsui_3371 - putative oxidoreductase, aryl-alcohol dehydrogenase like protein, at 3,612,055 to 3,613,107 _3371 Dsui_3372: Dsui_3372 - hypothetical protein, at 3,613,262 to 3,615,406 _3372 Dsui_3373: Dsui_3373 - Na+/phosphate symporter, at 3,615,423 to 3,617,114 _3373 Position (kb) 3613 3614 3615 3616Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 3612.483 kb on + strand, within Dsui_3371at 3612.491 kb on - strand, within Dsui_3371at 3612.498 kb on + strandat 3612.498 kb on + strand, within Dsui_3371at 3612.506 kb on - strand, within Dsui_3371at 3612.557 kb on + strand, within Dsui_3371at 3612.570 kb on + strandat 3612.623 kb on - strand, within Dsui_3371at 3612.624 kb on + strand, within Dsui_3371at 3612.652 kb on - strand, within Dsui_3371at 3612.710 kb on + strandat 3612.718 kb on - strand, within Dsui_3371at 3612.729 kb on + strandat 3612.955 kb on - strand, within Dsui_3371at 3613.043 kb on - strandat 3613.101 kb on + strandat 3613.109 kb on - strandat 3613.121 kb on - strandat 3613.124 kb on - strandat 3613.156 kb on + strandat 3613.156 kb on + strandat 3613.164 kb on - strandat 3613.164 kb on - strandat 3613.164 kb on - strandat 3613.164 kb on - strandat 3613.164 kb on - strandat 3613.218 kb on + strandat 3613.269 kb on + strandat 3613.398 kb on - strandat 3613.436 kb on - strandat 3613.438 kb on + strandat 3613.470 kb on + strandat 3613.526 kb on + strand, within Dsui_3372at 3613.627 kb on - strand, within Dsui_3372at 3613.638 kb on - strand, within Dsui_3372at 3613.669 kb on - strand, within Dsui_3372at 3613.669 kb on - strand, within Dsui_3372at 3614.105 kb on + strand, within Dsui_3372at 3614.113 kb on - strand, within Dsui_3372at 3614.113 kb on - strand, within Dsui_3372at 3614.170 kb on - strandat 3614.335 kb on + strand, within Dsui_3372at 3614.438 kb on - strand, within Dsui_3372at 3614.545 kb on + strand, within Dsui_3372at 3614.717 kb on - strand, within Dsui_3372at 3614.834 kb on - strand, within Dsui_3372at 3614.889 kb on - strand, within Dsui_3372at 3615.028 kb on - strand, within Dsui_3372at 3615.029 kb on - strandat 3615.096 kb on - strand, within Dsui_3372at 3615.120 kb on + strand, within Dsui_3372at 3615.162 kb on + strand, within Dsui_3372at 3615.288 kb on + strandat 3615.304 kb on + strandat 3615.379 kb on - strandat 3615.514 kb on + strandat 3615.573 kb on + strandat 3615.775 kb on + strand, within Dsui_3373at 3615.807 kb on + strand, within Dsui_3373at 3615.844 kb on + strand, within Dsui_3373at 3616.024 kb on + strand, within Dsui_3373at 3616.102 kb on + strandat 3616.241 kb on + strand, within Dsui_3373at 3616.260 kb on + strand, within Dsui_3373at 3616.327 kb on + strand, within Dsui_3373

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
remove
3,612,483 + Dsui_3371 0.41 +0.3
3,612,491 - Dsui_3371 0.41 -0.1
3,612,498 + +0.1
3,612,498 + Dsui_3371 0.42 -0.0
3,612,506 - Dsui_3371 0.43 +0.7
3,612,557 + Dsui_3371 0.48 -0.2
3,612,570 + -2.6
3,612,623 - Dsui_3371 0.54 -0.2
3,612,624 + Dsui_3371 0.54 +0.0
3,612,652 - Dsui_3371 0.57 +2.4
3,612,710 + -0.3
3,612,718 - Dsui_3371 0.63 +0.0
3,612,729 + -2.8
3,612,955 - Dsui_3371 0.85 +1.0
3,613,043 - +1.6
3,613,101 + -3.2
3,613,109 - -0.0
3,613,121 - +0.9
3,613,124 - +0.6
3,613,156 + +0.6
3,613,156 + +1.5
3,613,164 - +2.9
3,613,164 - +3.2
3,613,164 - +2.2
3,613,164 - +2.4
3,613,164 - +4.3
3,613,218 + +1.8
3,613,269 + +6.1
3,613,398 - +6.4
3,613,436 - +4.9
3,613,438 + +5.2
3,613,470 + +4.9
3,613,526 + Dsui_3372 0.12 +5.3
3,613,627 - Dsui_3372 0.17 +4.1
3,613,638 - Dsui_3372 0.18 +4.9
3,613,669 - Dsui_3372 0.19 +5.1
3,613,669 - Dsui_3372 0.19 +5.9
3,614,105 + Dsui_3372 0.39 +6.3
3,614,113 - Dsui_3372 0.40 +5.6
3,614,113 - Dsui_3372 0.40 +5.1
3,614,170 - +6.5
3,614,335 + Dsui_3372 0.50 +5.9
3,614,438 - Dsui_3372 0.55 +4.4
3,614,545 + Dsui_3372 0.60 +6.8
3,614,717 - Dsui_3372 0.68 +4.7
3,614,834 - Dsui_3372 0.73 +5.5
3,614,889 - Dsui_3372 0.76 +4.5
3,615,028 - Dsui_3372 0.82 +7.1
3,615,029 - +5.0
3,615,096 - Dsui_3372 0.86 +3.4
3,615,120 + Dsui_3372 0.87 +6.0
3,615,162 + Dsui_3372 0.89 +5.6
3,615,288 + +5.1
3,615,304 + +6.4
3,615,379 - +0.4
3,615,514 + -0.2
3,615,573 + +1.8
3,615,775 + Dsui_3373 0.21 +0.6
3,615,807 + Dsui_3373 0.23 +0.4
3,615,844 + Dsui_3373 0.25 +1.2
3,616,024 + Dsui_3373 0.36 +0.2
3,616,102 + +0.1
3,616,241 + Dsui_3373 0.48 -0.1
3,616,260 + Dsui_3373 0.49 +0.4
3,616,327 + Dsui_3373 0.53 -1.4

Or see this region's nucleotide sequence