Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2706 and Dsui_2707 are separated by 21 nucleotides Dsui_2707 and Dsui_2708 are separated by 56 nucleotides Dsui_2708 and Dsui_2709 are separated by 22 nucleotides Dsui_2709 and Dsui_2710 are separated by 59 nucleotides
Dsui_2706: Dsui_2706 - adenine phosphoribosyltransferase, at 2,863,016 to 2,863,543
_2706
Dsui_2707: Dsui_2707 - putative permease, at 2,863,565 to 2,864,470
_2707
Dsui_2708: Dsui_2708 - succinyldiaminopimelate transaminase, at 2,864,527 to 2,865,732
_2708
Dsui_2709: Dsui_2709 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 2,865,755 to 2,866,573
_2709
Dsui_2710: Dsui_2710 - pilus retraction protein PilT, at 2,866,633 to 2,867,814
_2710
Position (kb)
2864
2865
2866 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2863.529 kb on - strand at 2863.631 kb on - strand at 2863.740 kb on + strand at 2863.759 kb on + strand, within Dsui_2707 at 2863.772 kb on - strand, within Dsui_2707 at 2863.844 kb on + strand, within Dsui_2707 at 2863.926 kb on + strand, within Dsui_2707 at 2863.934 kb on - strand at 2863.948 kb on + strand at 2863.971 kb on - strand, within Dsui_2707 at 2864.099 kb on + strand at 2864.130 kb on + strand, within Dsui_2707 at 2864.138 kb on - strand, within Dsui_2707 at 2864.153 kb on - strand, within Dsui_2707 at 2864.310 kb on + strand, within Dsui_2707 at 2864.345 kb on + strand, within Dsui_2707 at 2864.383 kb on - strand at 2864.383 kb on - strand at 2864.393 kb on - strand at 2864.393 kb on - strand at 2864.393 kb on - strand at 2864.505 kb on + strand at 2864.505 kb on + strand at 2864.513 kb on - strand at 2864.548 kb on + strand at 2864.561 kb on - strand at 2864.583 kb on + strand at 2864.583 kb on + strand at 2864.583 kb on + strand at 2864.591 kb on - strand at 2864.593 kb on + strand at 2864.628 kb on + strand at 2864.636 kb on - strand at 2864.664 kb on + strand, within Dsui_2708 at 2864.726 kb on + strand, within Dsui_2708 at 2864.726 kb on + strand, within Dsui_2708 at 2864.734 kb on - strand, within Dsui_2708 at 2864.913 kb on + strand, within Dsui_2708 at 2864.937 kb on + strand, within Dsui_2708 at 2864.963 kb on + strand, within Dsui_2708 at 2865.006 kb on + strand, within Dsui_2708 at 2865.014 kb on - strand, within Dsui_2708 at 2865.081 kb on - strand at 2865.081 kb on - strand at 2865.081 kb on - strand at 2865.321 kb on - strand at 2865.503 kb on + strand, within Dsui_2708 at 2865.503 kb on + strand, within Dsui_2708 at 2865.534 kb on - strand, within Dsui_2708 at 2865.588 kb on + strand, within Dsui_2708 at 2865.709 kb on - strand at 2865.726 kb on + strand at 2865.727 kb on + strand at 2866.577 kb on + strand at 2866.582 kb on + strand at 2866.650 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate remove 2,863,529 - -3.4 2,863,631 - +0.9 2,863,740 + +1.0 2,863,759 + Dsui_2707 0.21 +0.9 2,863,772 - Dsui_2707 0.23 -1.2 2,863,844 + Dsui_2707 0.31 -1.1 2,863,926 + Dsui_2707 0.40 +0.7 2,863,934 - +1.8 2,863,948 + -0.5 2,863,971 - Dsui_2707 0.45 -0.3 2,864,099 + +1.5 2,864,130 + Dsui_2707 0.62 -0.6 2,864,138 - Dsui_2707 0.63 -0.2 2,864,153 - Dsui_2707 0.65 +1.7 2,864,310 + Dsui_2707 0.82 -0.3 2,864,345 + Dsui_2707 0.86 -2.8 2,864,383 - +0.3 2,864,383 - -3.7 2,864,393 - +1.1 2,864,393 - +1.0 2,864,393 - +1.1 2,864,505 + +1.4 2,864,505 + +1.4 2,864,513 - +1.3 2,864,548 + +0.5 2,864,561 - +1.1 2,864,583 + +1.1 2,864,583 + +1.2 2,864,583 + +0.3 2,864,591 - +0.4 2,864,593 + +2.8 2,864,628 + +1.5 2,864,636 - +0.8 2,864,664 + Dsui_2708 0.11 +0.7 2,864,726 + Dsui_2708 0.17 +0.8 2,864,726 + Dsui_2708 0.17 +2.6 2,864,734 - Dsui_2708 0.17 -1.3 2,864,913 + Dsui_2708 0.32 +0.9 2,864,937 + Dsui_2708 0.34 +0.1 2,864,963 + Dsui_2708 0.36 +0.3 2,865,006 + Dsui_2708 0.40 +0.2 2,865,014 - Dsui_2708 0.40 -1.3 2,865,081 - +2.6 2,865,081 - -2.5 2,865,081 - -2.7 2,865,321 - -1.8 2,865,503 + Dsui_2708 0.81 +1.3 2,865,503 + Dsui_2708 0.81 +1.7 2,865,534 - Dsui_2708 0.83 +2.7 2,865,588 + Dsui_2708 0.88 -1.8 2,865,709 - -1.8 2,865,726 + +1.8 2,865,727 + +0.8 2,866,577 + +1.0 2,866,582 + +2.0 2,866,650 + +1.7
Or see this region's nucleotide sequence