Strain Fitness in Dechlorosoma suillum PS around Dsui_2654

Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2652 and Dsui_2653 are separated by 29 nucleotidesDsui_2653 and Dsui_2654 are separated by 16 nucleotidesDsui_2654 and Dsui_2655 overlap by 4 nucleotidesDsui_2655 and Dsui_2656 are separated by 13 nucleotides Dsui_2652: Dsui_2652 - hydrolase, TatD family, at 2,808,188 to 2,808,970 _2652 Dsui_2653: Dsui_2653 - Tfp pilus assembly protein PilZ, at 2,809,000 to 2,809,386 _2653 Dsui_2654: Dsui_2654 - DNA polymerase III, delta'' subunit, at 2,809,403 to 2,810,428 _2654 Dsui_2655: Dsui_2655 - thymidylate kinase, at 2,810,425 to 2,811,036 _2655 Dsui_2656: Dsui_2656 - conserved hypothetical protein, YceG family, at 2,811,050 to 2,812,045 _2656 Position (kb) 2809 2810 2811Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 2808.493 kb on + strandat 2808.513 kb on - strand, within Dsui_2652at 2808.527 kb on + strand, within Dsui_2652at 2808.580 kb on + strandat 2808.580 kb on + strandat 2808.617 kb on - strand, within Dsui_2652at 2808.622 kb on - strand, within Dsui_2652at 2808.624 kb on + strand, within Dsui_2652at 2808.765 kb on + strand, within Dsui_2652at 2808.773 kb on - strand, within Dsui_2652at 2808.795 kb on - strand, within Dsui_2652at 2808.815 kb on + strandat 2808.816 kb on + strandat 2808.835 kb on - strand, within Dsui_2652at 2808.855 kb on - strand, within Dsui_2652at 2808.941 kb on + strandat 2809.037 kb on - strandat 2809.063 kb on - strand, within Dsui_2653at 2809.108 kb on + strand, within Dsui_2653at 2809.123 kb on - strand, within Dsui_2653at 2809.131 kb on - strand, within Dsui_2653at 2809.188 kb on + strandat 2809.196 kb on - strand, within Dsui_2653at 2809.390 kb on - strandat 2809.409 kb on - strandat 2811.094 kb on + strandat 2811.250 kb on + strandat 2811.250 kb on - strand, within Dsui_2656at 2811.265 kb on + strand, within Dsui_2656at 2811.273 kb on - strand, within Dsui_2656at 2811.327 kb on + strand, within Dsui_2656

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Per-strain Table

Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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2,808,493 + -2.1
2,808,513 - Dsui_2652 0.42 +1.1
2,808,527 + Dsui_2652 0.43 +0.1
2,808,580 + -0.5
2,808,580 + -0.1
2,808,617 - Dsui_2652 0.55 +1.3
2,808,622 - Dsui_2652 0.55 +1.9
2,808,624 + Dsui_2652 0.56 -2.1
2,808,765 + Dsui_2652 0.74 -0.0
2,808,773 - Dsui_2652 0.75 +4.9
2,808,795 - Dsui_2652 0.78 +2.4
2,808,815 + +0.6
2,808,816 + -3.7
2,808,835 - Dsui_2652 0.83 +0.6
2,808,855 - Dsui_2652 0.85 +0.8
2,808,941 + -1.9
2,809,037 - +1.4
2,809,063 - Dsui_2653 0.16 +1.5
2,809,108 + Dsui_2653 0.28 +1.2
2,809,123 - Dsui_2653 0.32 +1.8
2,809,131 - Dsui_2653 0.34 +2.1
2,809,188 + -2.4
2,809,196 - Dsui_2653 0.51 +1.5
2,809,390 - +1.8
2,809,409 - +1.1
2,811,094 + +4.4
2,811,250 + -0.2
2,811,250 - Dsui_2656 0.20 +1.3
2,811,265 + Dsui_2656 0.22 -2.7
2,811,273 - Dsui_2656 0.22 +0.7
2,811,327 + Dsui_2656 0.28 -2.6

Or see this region's nucleotide sequence