Strain Fitness in Dechlorosoma suillum PS around Dsui_2506

Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2504 and Dsui_2505 overlap by 17 nucleotidesDsui_2505 and Dsui_2506 are separated by 93 nucleotidesDsui_2506 and Dsui_2507 are separated by 344 nucleotides Dsui_2504: Dsui_2504 - hypothetical protein, at 2,652,167 to 2,652,547 _2504 Dsui_2505: Dsui_2505 - putative transcriptional regulator, at 2,652,531 to 2,652,830 _2505 Dsui_2506: Dsui_2506 - transposase, IS30 family, at 2,652,924 to 2,654,084 _2506 Dsui_2507: Dsui_2507 - hypothetical protein, at 2,654,429 to 2,654,695 _2507 Position (kb) 2652 2653 2654 2655Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2651.945 kb on + strandat 2651.945 kb on + strandat 2651.965 kb on - strandat 2652.015 kb on + strandat 2652.015 kb on - strandat 2652.041 kb on + strandat 2652.206 kb on + strand, within Dsui_2504at 2652.278 kb on + strand, within Dsui_2504at 2652.314 kb on - strandat 2652.417 kb on + strand, within Dsui_2504at 2652.443 kb on + strand, within Dsui_2504at 2652.462 kb on + strand, within Dsui_2504at 2652.470 kb on - strand, within Dsui_2504at 2652.495 kb on - strandat 2652.495 kb on - strand, within Dsui_2504at 2652.495 kb on - strand, within Dsui_2504at 2652.956 kb on - strandat 2654.110 kb on + strandat 2654.110 kb on + strandat 2654.112 kb on + strandat 2654.112 kb on + strandat 2654.133 kb on + strandat 2654.146 kb on + strandat 2654.146 kb on + strandat 2654.150 kb on + strandat 2654.201 kb on + strandat 2654.201 kb on + strandat 2654.201 kb on + strandat 2654.236 kb on + strandat 2654.254 kb on + strandat 2654.254 kb on + strandat 2654.264 kb on + strandat 2654.310 kb on + strandat 2654.318 kb on + strandat 2654.348 kb on + strandat 2654.357 kb on + strandat 2654.362 kb on + strandat 2654.362 kb on + strandat 2654.362 kb on + strandat 2654.362 kb on + strandat 2654.362 kb on + strandat 2654.370 kb on - strandat 2654.375 kb on + strandat 2654.375 kb on + strandat 2654.375 kb on + strandat 2654.375 kb on + strandat 2654.375 kb on + strandat 2654.375 kb on + strandat 2654.375 kb on + strandat 2654.375 kb on + strandat 2654.375 kb on + strandat 2654.375 kb on + strandat 2654.375 kb on + strandat 2654.375 kb on + strandat 2654.375 kb on + strandat 2654.382 kb on + strandat 2654.390 kb on + strandat 2654.390 kb on + strandat 2654.398 kb on + strandat 2654.400 kb on + strandat 2654.408 kb on - strandat 2654.421 kb on + strandat 2654.421 kb on + strandat 2654.421 kb on + strandat 2654.421 kb on + strandat 2654.426 kb on + strandat 2654.426 kb on + strandat 2654.426 kb on + strandat 2654.431 kb on + strandat 2654.457 kb on + strand, within Dsui_2507at 2654.472 kb on + strand, within Dsui_2507at 2654.472 kb on + strand, within Dsui_2507at 2654.472 kb on + strand, within Dsui_2507at 2654.472 kb on + strand, within Dsui_2507at 2654.472 kb on + strand, within Dsui_2507at 2654.472 kb on + strand, within Dsui_2507at 2654.472 kb on + strand, within Dsui_2507at 2654.472 kb on + strand, within Dsui_2507at 2654.472 kb on + strand, within Dsui_2507at 2654.475 kb on - strand, within Dsui_2507at 2654.480 kb on - strandat 2654.480 kb on - strand, within Dsui_2507at 2654.480 kb on - strand, within Dsui_2507at 2654.489 kb on + strand, within Dsui_2507at 2654.489 kb on + strand, within Dsui_2507at 2654.489 kb on + strand, within Dsui_2507at 2654.490 kb on + strand, within Dsui_2507at 2654.492 kb on + strand, within Dsui_2507at 2654.499 kb on + strand, within Dsui_2507at 2654.500 kb on + strand, within Dsui_2507at 2654.500 kb on + strand, within Dsui_2507at 2654.521 kb on + strand, within Dsui_2507at 2654.521 kb on + strand, within Dsui_2507at 2654.522 kb on - strand, within Dsui_2507at 2654.530 kb on + strand, within Dsui_2507at 2654.532 kb on + strand, within Dsui_2507at 2654.532 kb on + strand, within Dsui_2507at 2654.542 kb on + strand, within Dsui_2507at 2654.542 kb on + strand, within Dsui_2507at 2654.542 kb on + strand, within Dsui_2507at 2654.542 kb on + strand, within Dsui_2507at 2654.542 kb on + strand, within Dsui_2507at 2654.542 kb on + strand, within Dsui_2507at 2654.542 kb on + strand, within Dsui_2507at 2654.543 kb on + strand, within Dsui_2507at 2654.543 kb on + strand, within Dsui_2507at 2654.544 kb on + strand, within Dsui_2507at 2654.550 kb on - strandat 2654.554 kb on + strand, within Dsui_2507at 2654.554 kb on + strand, within Dsui_2507at 2654.554 kb on + strand, within Dsui_2507at 2654.568 kb on + strand, within Dsui_2507at 2654.569 kb on + strand, within Dsui_2507at 2654.576 kb on + strand, within Dsui_2507at 2654.576 kb on + strand, within Dsui_2507at 2654.576 kb on + strand, within Dsui_2507at 2654.591 kb on + strand, within Dsui_2507at 2654.591 kb on + strand, within Dsui_2507at 2654.598 kb on + strand, within Dsui_2507at 2654.605 kb on + strand, within Dsui_2507at 2654.605 kb on + strand, within Dsui_2507at 2654.615 kb on + strand, within Dsui_2507at 2654.617 kb on + strand, within Dsui_2507at 2654.617 kb on + strand, within Dsui_2507at 2654.622 kb on + strand, within Dsui_2507at 2654.622 kb on + strand, within Dsui_2507at 2654.622 kb on + strand, within Dsui_2507at 2654.622 kb on + strand, within Dsui_2507at 2654.622 kb on + strand, within Dsui_2507at 2654.625 kb on - strandat 2654.630 kb on - strand, within Dsui_2507at 2654.642 kb on + strand, within Dsui_2507at 2654.649 kb on + strand, within Dsui_2507at 2654.649 kb on + strand, within Dsui_2507at 2654.649 kb on + strand, within Dsui_2507at 2654.651 kb on + strand, within Dsui_2507at 2654.680 kb on + strandat 2654.680 kb on + strandat 2654.680 kb on + strandat 2654.690 kb on - strandat 2654.706 kb on + strandat 2654.714 kb on - strandat 2654.714 kb on - strandat 2654.731 kb on - strandat 2654.758 kb on + strandat 2654.769 kb on + strandat 2654.777 kb on - strandat 2654.782 kb on - strandat 2654.782 kb on - strandat 2654.784 kb on + strandat 2654.784 kb on + strandat 2654.784 kb on + strandat 2654.784 kb on + strandat 2654.797 kb on + strandat 2654.805 kb on - strandat 2654.806 kb on + strandat 2654.819 kb on - strandat 2654.828 kb on - strandat 2654.835 kb on - strandat 2654.837 kb on + strandat 2654.837 kb on + strandat 2654.842 kb on + strandat 2654.842 kb on + strandat 2654.843 kb on + strandat 2654.844 kb on + strandat 2654.844 kb on + strandat 2654.844 kb on + strandat 2654.848 kb on + strandat 2654.848 kb on + strandat 2654.851 kb on - strandat 2654.851 kb on - strandat 2654.851 kb on - strandat 2654.858 kb on - strandat 2654.876 kb on + strandat 2654.876 kb on + strandat 2654.876 kb on + strandat 2654.876 kb on + strandat 2654.876 kb on + strandat 2654.876 kb on + strandat 2654.876 kb on + strandat 2654.876 kb on + strandat 2654.876 kb on + strandat 2654.881 kb on + strandat 2654.881 kb on + strandat 2654.881 kb on + strandat 2654.881 kb on + strandat 2654.882 kb on + strandat 2654.884 kb on - strandat 2654.884 kb on - strandat 2654.884 kb on - strandat 2654.884 kb on - strandat 2654.884 kb on - strandat 2654.884 kb on - strandat 2654.889 kb on + strandat 2654.889 kb on + strandat 2654.889 kb on + strandat 2654.889 kb on - strandat 2654.890 kb on - strandat 2654.890 kb on - strandat 2654.892 kb on + strandat 2654.894 kb on - strandat 2654.900 kb on - strandat 2654.902 kb on + strandat 2654.902 kb on + strandat 2654.903 kb on + strandat 2654.903 kb on + strandat 2654.903 kb on + strandat 2654.903 kb on + strandat 2654.910 kb on - strandat 2654.911 kb on - strandat 2654.911 kb on - strandat 2654.970 kb on + strandat 2654.970 kb on + strandat 2654.970 kb on + strandat 2654.970 kb on + strandat 2654.970 kb on + strandat 2654.970 kb on + strandat 2654.978 kb on - strandat 2654.978 kb on - strandat 2654.978 kb on - strandat 2654.978 kb on - strandat 2654.978 kb on - strandat 2654.978 kb on - strandat 2654.978 kb on - strandat 2654.978 kb on - strandat 2654.978 kb on - strandat 2654.978 kb on - strandat 2654.978 kb on - strandat 2654.980 kb on + strandat 2654.986 kb on - strandat 2654.994 kb on + strandat 2654.995 kb on - strandat 2654.995 kb on - strandat 2655.003 kb on - strandat 2655.060 kb on + strandat 2655.063 kb on + strandat 2655.068 kb on - strandat 2655.068 kb on - strandat 2655.068 kb on - strandat 2655.068 kb on - strandat 2655.077 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
remove
2,651,945 + -1.8
2,651,945 + -1.0
2,651,965 - -0.2
2,652,015 + -3.5
2,652,015 - -0.5
2,652,041 + -2.1
2,652,206 + Dsui_2504 0.10 +0.8
2,652,278 + Dsui_2504 0.29 +1.2
2,652,314 - -0.9
2,652,417 + Dsui_2504 0.66 +1.2
2,652,443 + Dsui_2504 0.72 +0.7
2,652,462 + Dsui_2504 0.77 -1.7
2,652,470 - Dsui_2504 0.80 -0.8
2,652,495 - -1.8
2,652,495 - Dsui_2504 0.86 -3.8
2,652,495 - Dsui_2504 0.86 -2.6
2,652,956 - -0.0
2,654,110 + -0.6
2,654,110 + -2.7
2,654,112 + -0.5
2,654,112 + -0.4
2,654,133 + -0.4
2,654,146 + +1.5
2,654,146 + +1.2
2,654,150 + +1.2
2,654,201 + +1.6
2,654,201 + -1.1
2,654,201 + -0.7
2,654,236 + -1.8
2,654,254 + -0.2
2,654,254 + -0.9
2,654,264 + -1.0
2,654,310 + +0.2
2,654,318 + -3.3
2,654,348 + +1.0
2,654,357 + +0.3
2,654,362 + +0.9
2,654,362 + +2.1
2,654,362 + +1.0
2,654,362 + -1.2
2,654,362 + +1.0
2,654,370 - -1.7
2,654,375 + -0.0
2,654,375 + +1.3
2,654,375 + +1.2
2,654,375 + +0.8
2,654,375 + -1.3
2,654,375 + +1.2
2,654,375 + +1.1
2,654,375 + +1.3
2,654,375 + +0.7
2,654,375 + +0.7
2,654,375 + +0.9
2,654,375 + +0.7
2,654,375 + +0.2
2,654,382 + +1.0
2,654,390 + +0.2
2,654,390 + +1.0
2,654,398 + +0.4
2,654,400 + +1.1
2,654,408 - -1.9
2,654,421 + +1.3
2,654,421 + -0.7
2,654,421 + +1.6
2,654,421 + +0.3
2,654,426 + +1.0
2,654,426 + +0.5
2,654,426 + +0.3
2,654,431 + +1.3
2,654,457 + Dsui_2507 0.10 -0.0
2,654,472 + Dsui_2507 0.16 +0.5
2,654,472 + Dsui_2507 0.16 +0.8
2,654,472 + Dsui_2507 0.16 +0.1
2,654,472 + Dsui_2507 0.16 +1.1
2,654,472 + Dsui_2507 0.16 +0.1
2,654,472 + Dsui_2507 0.16 +1.0
2,654,472 + Dsui_2507 0.16 +1.2
2,654,472 + Dsui_2507 0.16 +1.1
2,654,472 + Dsui_2507 0.16 +0.7
2,654,475 - Dsui_2507 0.17 -0.1
2,654,480 - -2.1
2,654,480 - Dsui_2507 0.19 -3.5
2,654,480 - Dsui_2507 0.19 -2.0
2,654,489 + Dsui_2507 0.22 +0.5
2,654,489 + Dsui_2507 0.22 +1.3
2,654,489 + Dsui_2507 0.22 +1.0
2,654,490 + Dsui_2507 0.23 +0.9
2,654,492 + Dsui_2507 0.24 +0.5
2,654,499 + Dsui_2507 0.26 -1.8
2,654,500 + Dsui_2507 0.27 +1.1
2,654,500 + Dsui_2507 0.27 +0.6
2,654,521 + Dsui_2507 0.34 +1.2
2,654,521 + Dsui_2507 0.34 +0.5
2,654,522 - Dsui_2507 0.35 +0.6
2,654,530 + Dsui_2507 0.38 +2.8
2,654,532 + Dsui_2507 0.39 +0.9
2,654,532 + Dsui_2507 0.39 +0.3
2,654,542 + Dsui_2507 0.42 +0.2
2,654,542 + Dsui_2507 0.42 +1.7
2,654,542 + Dsui_2507 0.42 +0.8
2,654,542 + Dsui_2507 0.42 +2.7
2,654,542 + Dsui_2507 0.42 +0.6
2,654,542 + Dsui_2507 0.42 +0.8
2,654,542 + Dsui_2507 0.42 +0.2
2,654,543 + Dsui_2507 0.43 +0.6
2,654,543 + Dsui_2507 0.43 +0.7
2,654,544 + Dsui_2507 0.43 +0.6
2,654,550 - -2.4
2,654,554 + Dsui_2507 0.47 +1.2
2,654,554 + Dsui_2507 0.47 +0.9
2,654,554 + Dsui_2507 0.47 +1.3
2,654,568 + Dsui_2507 0.52 +0.1
2,654,569 + Dsui_2507 0.52 +0.2
2,654,576 + Dsui_2507 0.55 +1.2
2,654,576 + Dsui_2507 0.55 +1.1
2,654,576 + Dsui_2507 0.55 -1.2
2,654,591 + Dsui_2507 0.61 +0.2
2,654,591 + Dsui_2507 0.61 +1.1
2,654,598 + Dsui_2507 0.63 -0.2
2,654,605 + Dsui_2507 0.66 +1.2
2,654,605 + Dsui_2507 0.66 +1.4
2,654,615 + Dsui_2507 0.70 +2.5
2,654,617 + Dsui_2507 0.70 +1.5
2,654,617 + Dsui_2507 0.70 +0.7
2,654,622 + Dsui_2507 0.72 +0.9
2,654,622 + Dsui_2507 0.72 +1.1
2,654,622 + Dsui_2507 0.72 +0.5
2,654,622 + Dsui_2507 0.72 +0.9
2,654,622 + Dsui_2507 0.72 +0.8
2,654,625 - -0.5
2,654,630 - Dsui_2507 0.75 -1.9
2,654,642 + Dsui_2507 0.80 -0.5
2,654,649 + Dsui_2507 0.82 +0.6
2,654,649 + Dsui_2507 0.82 +0.4
2,654,649 + Dsui_2507 0.82 +0.8
2,654,651 + Dsui_2507 0.83 +2.7
2,654,680 + +0.8
2,654,680 + +2.7
2,654,680 + +1.2
2,654,690 - -2.6
2,654,706 + +1.0
2,654,714 - +0.5
2,654,714 - +0.1
2,654,731 - -1.7
2,654,758 + +1.1
2,654,769 + +1.5
2,654,777 - +1.8
2,654,782 - -3.7
2,654,782 - -1.4
2,654,784 + +0.4
2,654,784 + -1.1
2,654,784 + +0.5
2,654,784 + +0.2
2,654,797 + +1.0
2,654,805 - -2.9
2,654,806 + +0.3
2,654,819 - +1.5
2,654,828 - -1.5
2,654,835 - +2.4
2,654,837 + +0.1
2,654,837 + +0.2
2,654,842 + +1.6
2,654,842 + +0.9
2,654,843 + +1.6
2,654,844 + +0.9
2,654,844 + +1.1
2,654,844 + +0.4
2,654,848 + +0.5
2,654,848 + -0.5
2,654,851 - -3.3
2,654,851 - -0.8
2,654,851 - -1.5
2,654,858 - -1.5
2,654,876 + -1.1
2,654,876 + +0.7
2,654,876 + +1.7
2,654,876 + +1.6
2,654,876 + +1.0
2,654,876 + +0.3
2,654,876 + -0.3
2,654,876 + +1.4
2,654,876 + +0.4
2,654,881 + -2.2
2,654,881 + +0.6
2,654,881 + +1.8
2,654,881 + +0.0
2,654,882 + +0.6
2,654,884 - -0.4
2,654,884 - -4.1
2,654,884 - -1.0
2,654,884 - -0.5
2,654,884 - +0.8
2,654,884 - -0.9
2,654,889 + +1.9
2,654,889 + -0.3
2,654,889 + +0.1
2,654,889 - -4.0
2,654,890 - -0.5
2,654,890 - +1.9
2,654,892 + +1.8
2,654,894 - +1.4
2,654,900 - -0.7
2,654,902 + +0.8
2,654,902 + +0.5
2,654,903 + +0.2
2,654,903 + +1.0
2,654,903 + +0.4
2,654,903 + -0.3
2,654,910 - -3.2
2,654,911 - -2.4
2,654,911 - +0.6
2,654,970 + +1.1
2,654,970 + +0.1
2,654,970 + +1.4
2,654,970 + +0.6
2,654,970 + +0.4
2,654,970 + +1.0
2,654,978 - +1.5
2,654,978 - -2.7
2,654,978 - -0.2
2,654,978 - +0.8
2,654,978 - -4.0
2,654,978 - -3.6
2,654,978 - -0.2
2,654,978 - -4.3
2,654,978 - -2.8
2,654,978 - -1.1
2,654,978 - +0.9
2,654,980 + +0.6
2,654,986 - -2.6
2,654,994 + +0.8
2,654,995 - +0.7
2,654,995 - -0.6
2,655,003 - -2.4
2,655,060 + -0.4
2,655,063 + +1.1
2,655,068 - -3.3
2,655,068 - +2.8
2,655,068 - -0.4
2,655,068 - -0.9
2,655,077 - +0.3

Or see this region's nucleotide sequence