Strain Fitness in Dechlorosoma suillum PS around Dsui_2385

Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2384 and Dsui_2385 are separated by 49 nucleotidesDsui_2385 and Dsui_2386 are separated by 111 nucleotides Dsui_2384: Dsui_2384 - putative esterase of the alpha-beta hydrolase superfamily, at 2,534,074 to 2,535,162 _2384 Dsui_2385: Dsui_2385 - transcription-repair coupling factor Mfd, at 2,535,212 to 2,538,808 _2385 Dsui_2386: Dsui_2386 - pyruvate-formate lyase-activating enzyme, at 2,538,920 to 2,540,020 _2386 Position (kb) 2535 2536 2537 2538 2539Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2534.226 kb on + strand, within Dsui_2384at 2534.234 kb on - strand, within Dsui_2384at 2534.234 kb on - strand, within Dsui_2384at 2534.386 kb on - strand, within Dsui_2384at 2534.464 kb on + strand, within Dsui_2384at 2534.472 kb on - strand, within Dsui_2384at 2534.575 kb on - strand, within Dsui_2384at 2534.580 kb on - strand, within Dsui_2384at 2534.597 kb on + strand, within Dsui_2384at 2534.610 kb on + strandat 2534.768 kb on - strand, within Dsui_2384at 2534.802 kb on - strand, within Dsui_2384at 2534.885 kb on - strand, within Dsui_2384at 2534.933 kb on + strand, within Dsui_2384at 2534.970 kb on + strandat 2534.978 kb on - strand, within Dsui_2384at 2535.017 kb on + strand, within Dsui_2384at 2535.092 kb on - strandat 2535.145 kb on - strandat 2535.152 kb on + strandat 2535.155 kb on - strandat 2535.160 kb on - strandat 2535.200 kb on + strandat 2535.200 kb on + strandat 2535.208 kb on - strandat 2535.372 kb on + strandat 2535.479 kb on + strandat 2535.503 kb on + strandat 2535.530 kb on - strandat 2535.577 kb on - strand, within Dsui_2385at 2535.586 kb on + strandat 2535.690 kb on - strand, within Dsui_2385at 2535.811 kb on + strandat 2535.998 kb on + strand, within Dsui_2385at 2536.122 kb on - strand, within Dsui_2385at 2536.134 kb on - strand, within Dsui_2385at 2536.210 kb on - strand, within Dsui_2385at 2536.222 kb on + strand, within Dsui_2385at 2536.479 kb on - strand, within Dsui_2385at 2536.485 kb on + strandat 2536.906 kb on - strand, within Dsui_2385at 2536.982 kb on - strand, within Dsui_2385at 2537.010 kb on + strandat 2537.013 kb on - strand, within Dsui_2385at 2537.106 kb on - strand, within Dsui_2385at 2537.217 kb on - strand, within Dsui_2385at 2537.363 kb on + strandat 2537.493 kb on - strand, within Dsui_2385at 2537.627 kb on - strand, within Dsui_2385at 2537.639 kb on - strand, within Dsui_2385at 2538.098 kb on - strand, within Dsui_2385at 2538.103 kb on - strand, within Dsui_2385at 2538.121 kb on + strandat 2538.128 kb on - strand, within Dsui_2385at 2538.370 kb on - strand, within Dsui_2385at 2538.556 kb on - strandat 2538.648 kb on + strandat 2539.039 kb on + strandat 2539.047 kb on - strand, within Dsui_2386at 2539.047 kb on - strand, within Dsui_2386at 2539.047 kb on - strandat 2539.048 kb on + strandat 2539.098 kb on - strand, within Dsui_2386at 2539.320 kb on - strandat 2539.331 kb on - strandat 2539.403 kb on - strandat 2539.451 kb on - strandat 2539.451 kb on - strandat 2539.625 kb on - strand, within Dsui_2386at 2539.632 kb on - strand, within Dsui_2386at 2539.632 kb on - strand, within Dsui_2386at 2539.770 kb on - strand, within Dsui_2386at 2539.786 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
remove
2,534,226 + Dsui_2384 0.14 +0.9
2,534,234 - Dsui_2384 0.15 +0.3
2,534,234 - Dsui_2384 0.15 -1.8
2,534,386 - Dsui_2384 0.29 -0.6
2,534,464 + Dsui_2384 0.36 +1.2
2,534,472 - Dsui_2384 0.37 -1.6
2,534,575 - Dsui_2384 0.46 +0.1
2,534,580 - Dsui_2384 0.46 -0.3
2,534,597 + Dsui_2384 0.48 -1.2
2,534,610 + -2.0
2,534,768 - Dsui_2384 0.64 -0.6
2,534,802 - Dsui_2384 0.67 -0.1
2,534,885 - Dsui_2384 0.74 -1.0
2,534,933 + Dsui_2384 0.79 -2.9
2,534,970 + +0.4
2,534,978 - Dsui_2384 0.83 +0.4
2,535,017 + Dsui_2384 0.87 -4.4
2,535,092 - -2.2
2,535,145 - +1.0
2,535,152 + -0.3
2,535,155 - +0.1
2,535,160 - +1.1
2,535,200 + -2.5
2,535,200 + -3.7
2,535,208 - +1.1
2,535,372 + -1.4
2,535,479 + -0.6
2,535,503 + -0.0
2,535,530 - +0.4
2,535,577 - Dsui_2385 0.10 -0.8
2,535,586 + +0.1
2,535,690 - Dsui_2385 0.13 -0.0
2,535,811 + -2.5
2,535,998 + Dsui_2385 0.22 -2.9
2,536,122 - Dsui_2385 0.25 -0.0
2,536,134 - Dsui_2385 0.26 -0.1
2,536,210 - Dsui_2385 0.28 +0.0
2,536,222 + Dsui_2385 0.28 -0.6
2,536,479 - Dsui_2385 0.35 -1.4
2,536,485 + -1.6
2,536,906 - Dsui_2385 0.47 -1.5
2,536,982 - Dsui_2385 0.49 +0.1
2,537,010 + -0.6
2,537,013 - Dsui_2385 0.50 +0.4
2,537,106 - Dsui_2385 0.53 +0.2
2,537,217 - Dsui_2385 0.56 +0.1
2,537,363 + -2.8
2,537,493 - Dsui_2385 0.63 -2.5
2,537,627 - Dsui_2385 0.67 +0.3
2,537,639 - Dsui_2385 0.67 +0.4
2,538,098 - Dsui_2385 0.80 +0.6
2,538,103 - Dsui_2385 0.80 -1.2
2,538,121 + +0.4
2,538,128 - Dsui_2385 0.81 +0.4
2,538,370 - Dsui_2385 0.88 +0.6
2,538,556 - -0.7
2,538,648 + -4.5
2,539,039 + -1.8
2,539,047 - Dsui_2386 0.12 -0.5
2,539,047 - Dsui_2386 0.12 +1.3
2,539,047 - -0.0
2,539,048 + -0.6
2,539,098 - Dsui_2386 0.16 +0.2
2,539,320 - -1.3
2,539,331 - +1.0
2,539,403 - +0.9
2,539,451 - +0.6
2,539,451 - -1.6
2,539,625 - Dsui_2386 0.64 +1.5
2,539,632 - Dsui_2386 0.65 +0.5
2,539,632 - Dsui_2386 0.65 +0.3
2,539,770 - Dsui_2386 0.77 -0.2
2,539,786 + -3.0

Or see this region's nucleotide sequence