Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2148 and Dsui_2149 are separated by 201 nucleotides Dsui_2149 and Dsui_2150 are separated by 4 nucleotides
Dsui_2148: Dsui_2148 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,275,744 to 2,278,623
_2148
Dsui_2149: Dsui_2149 - DNA helicase, Rad3, at 2,278,825 to 2,280,777
_2149
Dsui_2150: Dsui_2150 - hypothetical protein, at 2,280,782 to 2,282,134
_2150
Position (kb)
2278
2279
2280
2281 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2 at 2277.888 kb on + strand at 2278.089 kb on + strand, within Dsui_2148 at 2278.125 kb on + strand, within Dsui_2148 at 2278.191 kb on + strand at 2278.307 kb on + strand at 2278.336 kb on - strand at 2278.363 kb on - strand at 2278.543 kb on - strand at 2278.565 kb on - strand at 2278.565 kb on - strand at 2278.631 kb on - strand at 2278.664 kb on + strand at 2279.015 kb on - strand at 2279.136 kb on + strand, within Dsui_2149 at 2279.230 kb on + strand, within Dsui_2149 at 2279.290 kb on + strand, within Dsui_2149 at 2279.362 kb on + strand, within Dsui_2149 at 2279.362 kb on + strand, within Dsui_2149 at 2279.370 kb on - strand at 2279.370 kb on - strand at 2279.593 kb on + strand, within Dsui_2149 at 2279.656 kb on - strand at 2279.664 kb on + strand, within Dsui_2149 at 2279.708 kb on - strand at 2279.805 kb on + strand, within Dsui_2149 at 2279.805 kb on + strand, within Dsui_2149 at 2279.805 kb on + strand, within Dsui_2149 at 2279.848 kb on - strand at 2279.918 kb on + strand, within Dsui_2149 at 2279.918 kb on + strand, within Dsui_2149 at 2279.925 kb on + strand, within Dsui_2149 at 2280.019 kb on - strand at 2280.153 kb on - strand at 2280.353 kb on - strand, within Dsui_2149 at 2280.464 kb on + strand, within Dsui_2149 at 2280.576 kb on + strand, within Dsui_2149 at 2280.654 kb on - strand at 2280.786 kb on - strand at 2280.868 kb on - strand at 2280.870 kb on + strand at 2280.881 kb on + strand at 2280.881 kb on + strand at 2280.889 kb on - strand at 2281.146 kb on + strand, within Dsui_2150 at 2281.382 kb on + strand, within Dsui_2150 at 2281.490 kb on + strand, within Dsui_2150 at 2281.604 kb on - strand, within Dsui_2150 at 2281.673 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate remove 2,277,888 + -2.8 2,278,089 + Dsui_2148 0.81 +0.6 2,278,125 + Dsui_2148 0.83 +1.2 2,278,191 + +1.4 2,278,307 + -1.2 2,278,336 - +1.1 2,278,363 - +1.9 2,278,543 - +1.8 2,278,565 - +1.9 2,278,565 - +1.4 2,278,631 - +2.4 2,278,664 + -1.8 2,279,015 - -3.5 2,279,136 + Dsui_2149 0.16 -2.8 2,279,230 + Dsui_2149 0.21 +0.4 2,279,290 + Dsui_2149 0.24 -2.0 2,279,362 + Dsui_2149 0.27 -2.3 2,279,362 + Dsui_2149 0.27 +1.1 2,279,370 - -3.3 2,279,370 - -2.4 2,279,593 + Dsui_2149 0.39 -2.9 2,279,656 - -2.9 2,279,664 + Dsui_2149 0.43 -0.2 2,279,708 - -1.2 2,279,805 + Dsui_2149 0.50 +0.9 2,279,805 + Dsui_2149 0.50 +0.7 2,279,805 + Dsui_2149 0.50 -0.4 2,279,848 - -2.2 2,279,918 + Dsui_2149 0.56 -2.9 2,279,918 + Dsui_2149 0.56 -1.5 2,279,925 + Dsui_2149 0.56 -0.2 2,280,019 - -1.4 2,280,153 - +1.2 2,280,353 - Dsui_2149 0.78 -2.1 2,280,464 + Dsui_2149 0.84 +0.4 2,280,576 + Dsui_2149 0.90 +1.3 2,280,654 - -2.0 2,280,786 - -2.6 2,280,868 - -1.2 2,280,870 + -5.3 2,280,881 + -2.2 2,280,881 + -3.8 2,280,889 - -4.2 2,281,146 + Dsui_2150 0.27 -6.4 2,281,382 + Dsui_2150 0.44 -4.3 2,281,490 + Dsui_2150 0.52 -1.6 2,281,604 - Dsui_2150 0.61 -4.6 2,281,673 - -2.5
Or see this region's nucleotide sequence