Strain Fitness in Dechlorosoma suillum PS around Dsui_1183

Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1182 and Dsui_1183 overlap by 4 nucleotidesDsui_1183 and Dsui_1184 are separated by 120 nucleotidesDsui_1184 and Dsui_1185 are separated by 39 nucleotidesDsui_1185 and Dsui_1186 are separated by 12 nucleotides Dsui_1182: Dsui_1182 - diaminopimelate decarboxylase, at 1,235,606 to 1,236,862 _1182 Dsui_1183: Dsui_1183 - hypothetical protein, at 1,236,859 to 1,237,032 _1183 Dsui_1184: Dsui_1184 - iron donor protein CyaY, at 1,237,153 to 1,237,470 _1184 Dsui_1185: Dsui_1185 - hypothetical protein involved in intracellular sulfur reduction, at 1,237,510 to 1,237,866 _1185 Dsui_1186: Dsui_1186 - penicillin-binding protein, 1A family, at 1,237,879 to 1,240,194 _1186 Position (kb) 1236 1237 1238Strain fitness (log2 ratio) -2 -1 0 1 2at 1237.078 kb on - strandat 1237.104 kb on + strandat 1237.112 kb on - strandat 1237.116 kb on + strandat 1237.123 kb on - strandat 1237.124 kb on - strandat 1237.124 kb on - strandat 1237.124 kb on - strandat 1237.462 kb on - strandat 1237.493 kb on - strandat 1237.517 kb on + strandat 1237.525 kb on - strandat 1237.541 kb on - strandat 1237.552 kb on - strand, within Dsui_1185at 1237.615 kb on - strand, within Dsui_1185at 1237.615 kb on - strand, within Dsui_1185at 1237.615 kb on - strand, within Dsui_1185at 1237.852 kb on + strandat 1237.962 kb on - strandat 1237.970 kb on + strandat 1237.970 kb on + strandat 1237.992 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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1,237,078 - +0.8
1,237,104 + +0.7
1,237,112 - +0.2
1,237,116 + +0.9
1,237,123 - -0.4
1,237,124 - +0.3
1,237,124 - +1.4
1,237,124 - +0.1
1,237,462 - -2.3
1,237,493 - +0.5
1,237,517 + +0.2
1,237,525 - +1.5
1,237,541 - +1.0
1,237,552 - Dsui_1185 0.12 +0.5
1,237,615 - Dsui_1185 0.29 +2.0
1,237,615 - Dsui_1185 0.29 +0.6
1,237,615 - Dsui_1185 0.29 +0.5
1,237,852 + +0.9
1,237,962 - -0.8
1,237,970 + +0.1
1,237,970 + -1.3
1,237,992 + -0.5

Or see this region's nucleotide sequence