Strain Fitness in Dechlorosoma suillum PS around Dsui_0129

Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0128 and Dsui_0129 are separated by 116 nucleotidesDsui_0129 and Dsui_0130 are separated by 177 nucleotides Dsui_0128: Dsui_0128 - D-alanyl-D-alanine carboxypeptidase, at 125,968 to 126,987 _0128 Dsui_0129: Dsui_0129 - putative esterase of the alpha-beta hydrolase superfamily, at 127,104 to 128,285 _0129 Dsui_0130: Dsui_0130 - malic enzyme, at 128,463 to 130,739 _0130 Position (kb) 127 128 129Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 126.143 kb on + strandat 126.151 kb on - strand, within Dsui_0128at 126.151 kb on - strand, within Dsui_0128at 126.151 kb on - strand, within Dsui_0128at 126.173 kb on + strand, within Dsui_0128at 126.221 kb on + strand, within Dsui_0128at 126.233 kb on + strand, within Dsui_0128at 126.271 kb on + strandat 126.279 kb on - strand, within Dsui_0128at 126.284 kb on + strand, within Dsui_0128at 126.298 kb on - strand, within Dsui_0128at 126.406 kb on + strand, within Dsui_0128at 126.438 kb on + strand, within Dsui_0128at 126.439 kb on + strand, within Dsui_0128at 126.466 kb on + strand, within Dsui_0128at 126.534 kb on + strand, within Dsui_0128at 126.534 kb on + strand, within Dsui_0128at 126.541 kb on - strand, within Dsui_0128at 126.603 kb on + strandat 126.603 kb on + strandat 126.656 kb on - strand, within Dsui_0128at 126.680 kb on + strand, within Dsui_0128at 126.688 kb on - strand, within Dsui_0128at 126.688 kb on - strand, within Dsui_0128at 126.704 kb on - strand, within Dsui_0128at 126.715 kb on - strand, within Dsui_0128at 126.720 kb on - strand, within Dsui_0128at 126.727 kb on + strand, within Dsui_0128at 126.774 kb on + strand, within Dsui_0128at 126.782 kb on - strand, within Dsui_0128at 126.782 kb on - strand, within Dsui_0128at 126.842 kb on + strand, within Dsui_0128at 126.850 kb on - strand, within Dsui_0128at 126.896 kb on + strandat 126.904 kb on - strandat 126.904 kb on - strandat 126.953 kb on + strandat 126.963 kb on - strandat 127.009 kb on + strandat 127.010 kb on + strandat 127.018 kb on - strandat 127.021 kb on + strandat 127.042 kb on + strandat 127.042 kb on + strandat 127.052 kb on - strandat 127.101 kb on + strandat 127.101 kb on + strandat 127.108 kb on - strandat 127.112 kb on + strandat 127.120 kb on - strandat 127.120 kb on - strandat 127.120 kb on - strandat 127.120 kb on - strandat 127.122 kb on + strandat 127.143 kb on + strandat 127.146 kb on - strandat 127.146 kb on - strandat 127.161 kb on + strandat 127.169 kb on - strandat 127.181 kb on + strandat 127.210 kb on - strandat 127.210 kb on - strandat 127.268 kb on - strand, within Dsui_0129at 127.270 kb on + strandat 127.315 kb on - strand, within Dsui_0129at 127.346 kb on - strand, within Dsui_0129at 127.387 kb on - strand, within Dsui_0129at 127.474 kb on - strand, within Dsui_0129at 127.502 kb on - strand, within Dsui_0129at 127.570 kb on + strandat 127.578 kb on - strand, within Dsui_0129at 127.659 kb on + strand, within Dsui_0129at 127.659 kb on + strandat 127.667 kb on - strand, within Dsui_0129at 127.689 kb on + strand, within Dsui_0129at 127.689 kb on - strand, within Dsui_0129at 127.760 kb on - strandat 127.804 kb on + strand, within Dsui_0129at 127.828 kb on + strand, within Dsui_0129at 127.887 kb on + strand, within Dsui_0129at 127.899 kb on + strand, within Dsui_0129at 128.024 kb on + strandat 128.079 kb on - strand, within Dsui_0129at 128.118 kb on + strandat 128.247 kb on - strandat 128.560 kb on + strandat 128.615 kb on + strandat 128.620 kb on + strandat 128.665 kb on + strandat 128.671 kb on + strandat 128.706 kb on + strand, within Dsui_0130at 128.788 kb on + strand, within Dsui_0130at 128.798 kb on + strandat 128.863 kb on - strand, within Dsui_0130at 128.987 kb on + strand, within Dsui_0130at 128.987 kb on + strand, within Dsui_0130at 129.064 kb on - strand, within Dsui_0130at 129.065 kb on + strand, within Dsui_0130at 129.099 kb on + strandat 129.102 kb on - strand, within Dsui_0130at 129.128 kb on + strand, within Dsui_0130at 129.128 kb on + strand, within Dsui_0130at 129.136 kb on - strand, within Dsui_0130at 129.185 kb on + strand, within Dsui_0130at 129.234 kb on - strand, within Dsui_0130at 129.263 kb on - strand, within Dsui_0130at 129.278 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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126,143 + -1.0
126,151 - Dsui_0128 0.18 -1.3
126,151 - Dsui_0128 0.18 +0.5
126,151 - Dsui_0128 0.18 -1.8
126,173 + Dsui_0128 0.20 -2.2
126,221 + Dsui_0128 0.25 -1.9
126,233 + Dsui_0128 0.26 -1.2
126,271 + +1.6
126,279 - Dsui_0128 0.30 -1.5
126,284 + Dsui_0128 0.31 -0.1
126,298 - Dsui_0128 0.32 +0.8
126,406 + Dsui_0128 0.43 +0.8
126,438 + Dsui_0128 0.46 -1.0
126,439 + Dsui_0128 0.46 -1.7
126,466 + Dsui_0128 0.49 -1.3
126,534 + Dsui_0128 0.55 +1.4
126,534 + Dsui_0128 0.55 +1.9
126,541 - Dsui_0128 0.56 -1.9
126,603 + -0.9
126,603 + -0.6
126,656 - Dsui_0128 0.67 -0.2
126,680 + Dsui_0128 0.70 +0.7
126,688 - Dsui_0128 0.71 +0.2
126,688 - Dsui_0128 0.71 -0.4
126,704 - Dsui_0128 0.72 -0.2
126,715 - Dsui_0128 0.73 -0.7
126,720 - Dsui_0128 0.74 -0.5
126,727 + Dsui_0128 0.74 +0.6
126,774 + Dsui_0128 0.79 -2.5
126,782 - Dsui_0128 0.80 +0.5
126,782 - Dsui_0128 0.80 +0.1
126,842 + Dsui_0128 0.86 -0.8
126,850 - Dsui_0128 0.86 -0.6
126,896 + -2.7
126,904 - -1.5
126,904 - -0.9
126,953 + -0.4
126,963 - +0.4
127,009 + -1.9
127,010 + -3.5
127,018 - +1.1
127,021 + -2.9
127,042 + +0.4
127,042 + -0.3
127,052 - +0.9
127,101 + +0.1
127,101 + +0.3
127,108 - +1.1
127,112 + +0.2
127,120 - +0.9
127,120 - +1.0
127,120 - -0.2
127,120 - +0.8
127,122 + +0.1
127,143 + -1.1
127,146 - +0.8
127,146 - +0.4
127,161 + +0.2
127,169 - +0.0
127,181 + -1.7
127,210 - +0.4
127,210 - -0.3
127,268 - Dsui_0129 0.14 +0.8
127,270 + +0.3
127,315 - Dsui_0129 0.18 +0.2
127,346 - Dsui_0129 0.20 +0.3
127,387 - Dsui_0129 0.24 +0.2
127,474 - Dsui_0129 0.31 -0.5
127,502 - Dsui_0129 0.34 +0.3
127,570 + -3.1
127,578 - Dsui_0129 0.40 +1.0
127,659 + Dsui_0129 0.47 +1.2
127,659 + +1.9
127,667 - Dsui_0129 0.48 -0.4
127,689 + Dsui_0129 0.49 +0.3
127,689 - Dsui_0129 0.49 -0.7
127,760 - +0.5
127,804 + Dsui_0129 0.59 -0.1
127,828 + Dsui_0129 0.61 -0.3
127,887 + Dsui_0129 0.66 -0.1
127,899 + Dsui_0129 0.67 -0.2
128,024 + +0.3
128,079 - Dsui_0129 0.82 +0.3
128,118 + +1.6
128,247 - +1.9
128,560 + +1.8
128,615 + +0.3
128,620 + +0.1
128,665 + +0.8
128,671 + +1.0
128,706 + Dsui_0130 0.11 +1.0
128,788 + Dsui_0130 0.14 -0.7
128,798 + +0.4
128,863 - Dsui_0130 0.18 +0.6
128,987 + Dsui_0130 0.23 +0.8
128,987 + Dsui_0130 0.23 +0.5
129,064 - Dsui_0130 0.26 +0.9
129,065 + Dsui_0130 0.26 +2.5
129,099 + -0.5
129,102 - Dsui_0130 0.28 +1.7
129,128 + Dsui_0130 0.29 +0.1
129,128 + Dsui_0130 0.29 -0.2
129,136 - Dsui_0130 0.30 +2.0
129,185 + Dsui_0130 0.32 +0.4
129,234 - Dsui_0130 0.34 +0.8
129,263 - Dsui_0130 0.35 +0.6
129,278 + +0.8

Or see this region's nucleotide sequence