Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0128 and Dsui_0129 are separated by 116 nucleotides Dsui_0129 and Dsui_0130 are separated by 177 nucleotides
Dsui_0128: Dsui_0128 - D-alanyl-D-alanine carboxypeptidase, at 125,968 to 126,987
_0128
Dsui_0129: Dsui_0129 - putative esterase of the alpha-beta hydrolase superfamily, at 127,104 to 128,285
_0129
Dsui_0130: Dsui_0130 - malic enzyme, at 128,463 to 130,739
_0130
Position (kb)
127
128
129 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 126.143 kb on + strand at 126.151 kb on - strand, within Dsui_0128 at 126.151 kb on - strand, within Dsui_0128 at 126.151 kb on - strand, within Dsui_0128 at 126.173 kb on + strand, within Dsui_0128 at 126.221 kb on + strand, within Dsui_0128 at 126.233 kb on + strand, within Dsui_0128 at 126.271 kb on + strand at 126.279 kb on - strand, within Dsui_0128 at 126.284 kb on + strand, within Dsui_0128 at 126.298 kb on - strand, within Dsui_0128 at 126.406 kb on + strand, within Dsui_0128 at 126.438 kb on + strand, within Dsui_0128 at 126.439 kb on + strand, within Dsui_0128 at 126.466 kb on + strand, within Dsui_0128 at 126.534 kb on + strand, within Dsui_0128 at 126.534 kb on + strand, within Dsui_0128 at 126.541 kb on - strand, within Dsui_0128 at 126.603 kb on + strand at 126.603 kb on + strand at 126.656 kb on - strand, within Dsui_0128 at 126.680 kb on + strand, within Dsui_0128 at 126.688 kb on - strand, within Dsui_0128 at 126.688 kb on - strand, within Dsui_0128 at 126.704 kb on - strand, within Dsui_0128 at 126.715 kb on - strand, within Dsui_0128 at 126.720 kb on - strand, within Dsui_0128 at 126.727 kb on + strand, within Dsui_0128 at 126.774 kb on + strand, within Dsui_0128 at 126.782 kb on - strand, within Dsui_0128 at 126.782 kb on - strand, within Dsui_0128 at 126.842 kb on + strand, within Dsui_0128 at 126.850 kb on - strand, within Dsui_0128 at 126.896 kb on + strand at 126.904 kb on - strand at 126.904 kb on - strand at 126.953 kb on + strand at 126.963 kb on - strand at 127.009 kb on + strand at 127.010 kb on + strand at 127.018 kb on - strand at 127.021 kb on + strand at 127.042 kb on + strand at 127.042 kb on + strand at 127.052 kb on - strand at 127.101 kb on + strand at 127.101 kb on + strand at 127.108 kb on - strand at 127.112 kb on + strand at 127.120 kb on - strand at 127.120 kb on - strand at 127.120 kb on - strand at 127.120 kb on - strand at 127.122 kb on + strand at 127.143 kb on + strand at 127.146 kb on - strand at 127.146 kb on - strand at 127.161 kb on + strand at 127.169 kb on - strand at 127.181 kb on + strand at 127.210 kb on - strand at 127.210 kb on - strand at 127.268 kb on - strand, within Dsui_0129 at 127.270 kb on + strand at 127.315 kb on - strand, within Dsui_0129 at 127.346 kb on - strand, within Dsui_0129 at 127.387 kb on - strand, within Dsui_0129 at 127.474 kb on - strand, within Dsui_0129 at 127.502 kb on - strand, within Dsui_0129 at 127.570 kb on + strand at 127.578 kb on - strand, within Dsui_0129 at 127.659 kb on + strand, within Dsui_0129 at 127.659 kb on + strand at 127.667 kb on - strand, within Dsui_0129 at 127.689 kb on + strand, within Dsui_0129 at 127.689 kb on - strand, within Dsui_0129 at 127.760 kb on - strand at 127.804 kb on + strand, within Dsui_0129 at 127.828 kb on + strand, within Dsui_0129 at 127.887 kb on + strand, within Dsui_0129 at 127.899 kb on + strand, within Dsui_0129 at 128.024 kb on + strand at 128.079 kb on - strand, within Dsui_0129 at 128.118 kb on + strand at 128.247 kb on - strand at 128.560 kb on + strand at 128.615 kb on + strand at 128.620 kb on + strand at 128.665 kb on + strand at 128.671 kb on + strand at 128.706 kb on + strand, within Dsui_0130 at 128.788 kb on + strand, within Dsui_0130 at 128.798 kb on + strand at 128.863 kb on - strand, within Dsui_0130 at 128.987 kb on + strand, within Dsui_0130 at 128.987 kb on + strand, within Dsui_0130 at 129.064 kb on - strand, within Dsui_0130 at 129.065 kb on + strand, within Dsui_0130 at 129.099 kb on + strand at 129.102 kb on - strand, within Dsui_0130 at 129.128 kb on + strand, within Dsui_0130 at 129.128 kb on + strand, within Dsui_0130 at 129.136 kb on - strand, within Dsui_0130 at 129.185 kb on + strand, within Dsui_0130 at 129.234 kb on - strand, within Dsui_0130 at 129.263 kb on - strand, within Dsui_0130 at 129.278 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate remove 126,143 + -1.0 126,151 - Dsui_0128 0.18 -1.3 126,151 - Dsui_0128 0.18 +0.5 126,151 - Dsui_0128 0.18 -1.8 126,173 + Dsui_0128 0.20 -2.2 126,221 + Dsui_0128 0.25 -1.9 126,233 + Dsui_0128 0.26 -1.2 126,271 + +1.6 126,279 - Dsui_0128 0.30 -1.5 126,284 + Dsui_0128 0.31 -0.1 126,298 - Dsui_0128 0.32 +0.8 126,406 + Dsui_0128 0.43 +0.8 126,438 + Dsui_0128 0.46 -1.0 126,439 + Dsui_0128 0.46 -1.7 126,466 + Dsui_0128 0.49 -1.3 126,534 + Dsui_0128 0.55 +1.4 126,534 + Dsui_0128 0.55 +1.9 126,541 - Dsui_0128 0.56 -1.9 126,603 + -0.9 126,603 + -0.6 126,656 - Dsui_0128 0.67 -0.2 126,680 + Dsui_0128 0.70 +0.7 126,688 - Dsui_0128 0.71 +0.2 126,688 - Dsui_0128 0.71 -0.4 126,704 - Dsui_0128 0.72 -0.2 126,715 - Dsui_0128 0.73 -0.7 126,720 - Dsui_0128 0.74 -0.5 126,727 + Dsui_0128 0.74 +0.6 126,774 + Dsui_0128 0.79 -2.5 126,782 - Dsui_0128 0.80 +0.5 126,782 - Dsui_0128 0.80 +0.1 126,842 + Dsui_0128 0.86 -0.8 126,850 - Dsui_0128 0.86 -0.6 126,896 + -2.7 126,904 - -1.5 126,904 - -0.9 126,953 + -0.4 126,963 - +0.4 127,009 + -1.9 127,010 + -3.5 127,018 - +1.1 127,021 + -2.9 127,042 + +0.4 127,042 + -0.3 127,052 - +0.9 127,101 + +0.1 127,101 + +0.3 127,108 - +1.1 127,112 + +0.2 127,120 - +0.9 127,120 - +1.0 127,120 - -0.2 127,120 - +0.8 127,122 + +0.1 127,143 + -1.1 127,146 - +0.8 127,146 - +0.4 127,161 + +0.2 127,169 - +0.0 127,181 + -1.7 127,210 - +0.4 127,210 - -0.3 127,268 - Dsui_0129 0.14 +0.8 127,270 + +0.3 127,315 - Dsui_0129 0.18 +0.2 127,346 - Dsui_0129 0.20 +0.3 127,387 - Dsui_0129 0.24 +0.2 127,474 - Dsui_0129 0.31 -0.5 127,502 - Dsui_0129 0.34 +0.3 127,570 + -3.1 127,578 - Dsui_0129 0.40 +1.0 127,659 + Dsui_0129 0.47 +1.2 127,659 + +1.9 127,667 - Dsui_0129 0.48 -0.4 127,689 + Dsui_0129 0.49 +0.3 127,689 - Dsui_0129 0.49 -0.7 127,760 - +0.5 127,804 + Dsui_0129 0.59 -0.1 127,828 + Dsui_0129 0.61 -0.3 127,887 + Dsui_0129 0.66 -0.1 127,899 + Dsui_0129 0.67 -0.2 128,024 + +0.3 128,079 - Dsui_0129 0.82 +0.3 128,118 + +1.6 128,247 - +1.9 128,560 + +1.8 128,615 + +0.3 128,620 + +0.1 128,665 + +0.8 128,671 + +1.0 128,706 + Dsui_0130 0.11 +1.0 128,788 + Dsui_0130 0.14 -0.7 128,798 + +0.4 128,863 - Dsui_0130 0.18 +0.6 128,987 + Dsui_0130 0.23 +0.8 128,987 + Dsui_0130 0.23 +0.5 129,064 - Dsui_0130 0.26 +0.9 129,065 + Dsui_0130 0.26 +2.5 129,099 + -0.5 129,102 - Dsui_0130 0.28 +1.7 129,128 + Dsui_0130 0.29 +0.1 129,128 + Dsui_0130 0.29 -0.2 129,136 - Dsui_0130 0.30 +2.0 129,185 + Dsui_0130 0.32 +0.4 129,234 - Dsui_0130 0.34 +0.8 129,263 - Dsui_0130 0.35 +0.6 129,278 + +0.8
Or see this region's nucleotide sequence