Strain Fitness in Dechlorosoma suillum PS around Dsui_0001

Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0001 and Dsui_0002 are separated by 67 nucleotidesDsui_0002 and Dsui_0003 are separated by 80 nucleotides Dsui_0001: Dsui_0001 - aminodeoxychorismate synthase, component I, at 103 to 1,923 _0001 Dsui_0002: Dsui_0002 - putative redox protein, regulator of disulfide bond formation, at 1,991 to 2,218 _0002 Dsui_0003: Dsui_0003 - putative Zn-dependent protease, at 2,299 to 3,786 _0003 Position (kb) 0 1 2Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 0.084 kb on + strandat 0.089 kb on + strandat 0.137 kb on - strandat 0.152 kb on - strandat 0.178 kb on - strandat 0.178 kb on - strandat 0.385 kb on - strand, within Dsui_0001at 0.423 kb on - strand, within Dsui_0001at 0.579 kb on - strand, within Dsui_0001at 0.645 kb on - strand, within Dsui_0001at 0.710 kb on + strandat 0.749 kb on + strand, within Dsui_0001at 0.857 kb on - strand, within Dsui_0001at 0.857 kb on - strand, within Dsui_0001at 0.919 kb on + strand, within Dsui_0001at 1.018 kb on + strandat 1.056 kb on + strandat 1.360 kb on + strand, within Dsui_0001at 1.368 kb on - strand, within Dsui_0001at 1.488 kb on - strand, within Dsui_0001at 1.514 kb on + strand, within Dsui_0001at 1.613 kb on + strand, within Dsui_0001at 1.621 kb on - strand, within Dsui_0001at 1.810 kb on + strandat 1.823 kb on - strandat 1.846 kb on - strandat 1.846 kb on - strandat 1.894 kb on - strandat 2.403 kb on - strandat 2.450 kb on - strand, within Dsui_0003at 2.534 kb on - strand, within Dsui_0003at 2.548 kb on - strand, within Dsui_0003at 2.572 kb on - strand, within Dsui_0003at 2.577 kb on - strand, within Dsui_0003

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Per-strain Table

Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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84 + -0.3
89 + +0.8
137 - +1.1
152 - -0.2
178 - +0.3
178 - +1.2
385 - Dsui_0001 0.15 +1.2
423 - Dsui_0001 0.18 +0.9
579 - Dsui_0001 0.26 -0.0
645 - Dsui_0001 0.30 +1.4
710 + -1.6
749 + Dsui_0001 0.35 -0.2
857 - Dsui_0001 0.41 +1.3
857 - Dsui_0001 0.41 +1.5
919 + Dsui_0001 0.45 +1.0
1,018 + +0.7
1,056 + -2.7
1,360 + Dsui_0001 0.69 +0.1
1,368 - Dsui_0001 0.69 +1.4
1,488 - Dsui_0001 0.76 +1.4
1,514 + Dsui_0001 0.77 -0.4
1,613 + Dsui_0001 0.83 -0.3
1,621 - Dsui_0001 0.83 +1.4
1,810 + -0.9
1,823 - +0.4
1,846 - +0.7
1,846 - +0.7
1,894 - +1.0
2,403 - -4.3
2,450 - Dsui_0003 0.10 -1.7
2,534 - Dsui_0003 0.16 -1.5
2,548 - Dsui_0003 0.17 -3.2
2,572 - Dsui_0003 0.18 -2.6
2,577 - Dsui_0003 0.19 -3.9

Or see this region's nucleotide sequence