Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19150

Experiment: ICP3_phage_0.41_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19145 and CSW01_19150 are separated by 160 nucleotidesCSW01_19150 and CSW01_19155 are separated by 26 nucleotidesCSW01_19155 and CSW01_19160 are separated by 213 nucleotides CSW01_19145: CSW01_19145 - porin, at 957,368 to 958,363 _19145 CSW01_19150: CSW01_19150 - EamA family transporter, at 958,524 to 959,420 _19150 CSW01_19155: CSW01_19155 - glutaredoxin, at 959,447 to 960,085 _19155 CSW01_19160: CSW01_19160 - hypothetical protein, at 960,299 to 960,766 _19160 Position (kb) 958 959 960Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 957.531 kb on + strand, within CSW01_19145at 957.618 kb on + strand, within CSW01_19145at 957.729 kb on - strand, within CSW01_19145at 957.803 kb on + strand, within CSW01_19145at 957.803 kb on + strand, within CSW01_19145at 957.803 kb on + strand, within CSW01_19145at 957.803 kb on + strand, within CSW01_19145at 957.811 kb on - strand, within CSW01_19145at 957.813 kb on + strand, within CSW01_19145at 957.821 kb on - strand, within CSW01_19145at 957.851 kb on + strand, within CSW01_19145at 957.918 kb on + strand, within CSW01_19145at 957.918 kb on + strand, within CSW01_19145at 957.936 kb on - strand, within CSW01_19145at 957.965 kb on + strand, within CSW01_19145at 957.978 kb on - strand, within CSW01_19145at 957.996 kb on + strand, within CSW01_19145at 957.997 kb on + strand, within CSW01_19145at 958.033 kb on + strand, within CSW01_19145at 958.033 kb on + strand, within CSW01_19145at 958.041 kb on - strand, within CSW01_19145at 958.041 kb on - strand, within CSW01_19145at 958.041 kb on - strand, within CSW01_19145at 958.080 kb on - strand, within CSW01_19145at 958.118 kb on + strand, within CSW01_19145at 958.124 kb on - strand, within CSW01_19145at 958.301 kb on - strandat 958.343 kb on + strandat 958.346 kb on - strandat 958.371 kb on + strandat 958.371 kb on + strandat 958.371 kb on + strandat 958.371 kb on + strandat 958.371 kb on + strandat 958.379 kb on - strandat 958.379 kb on - strandat 958.379 kb on - strandat 958.379 kb on - strandat 958.379 kb on - strandat 958.412 kb on + strandat 958.443 kb on + strandat 958.462 kb on - strandat 958.484 kb on - strandat 958.535 kb on + strandat 958.590 kb on + strandat 958.616 kb on - strand, within CSW01_19150at 958.635 kb on + strand, within CSW01_19150at 958.656 kb on + strand, within CSW01_19150at 958.659 kb on - strand, within CSW01_19150at 958.659 kb on - strand, within CSW01_19150at 958.828 kb on + strand, within CSW01_19150at 958.838 kb on + strand, within CSW01_19150at 958.873 kb on - strand, within CSW01_19150at 958.878 kb on - strand, within CSW01_19150at 958.878 kb on - strand, within CSW01_19150at 958.883 kb on - strand, within CSW01_19150at 958.883 kb on - strand, within CSW01_19150at 958.959 kb on - strand, within CSW01_19150at 959.015 kb on - strand, within CSW01_19150at 959.083 kb on + strand, within CSW01_19150at 959.171 kb on + strand, within CSW01_19150at 959.183 kb on + strand, within CSW01_19150at 959.183 kb on + strand, within CSW01_19150at 959.184 kb on - strand, within CSW01_19150at 959.191 kb on - strand, within CSW01_19150at 959.319 kb on - strand, within CSW01_19150at 959.497 kb on + strandat 959.505 kb on - strandat 959.555 kb on - strand, within CSW01_19155at 959.651 kb on - strand, within CSW01_19155at 959.710 kb on - strand, within CSW01_19155at 959.728 kb on - strand, within CSW01_19155at 959.728 kb on - strand, within CSW01_19155at 959.735 kb on + strand, within CSW01_19155at 959.735 kb on + strand, within CSW01_19155at 959.735 kb on + strand, within CSW01_19155at 959.741 kb on - strand, within CSW01_19155at 959.743 kb on - strand, within CSW01_19155at 959.860 kb on + strand, within CSW01_19155at 959.897 kb on + strand, within CSW01_19155at 959.897 kb on + strand, within CSW01_19155at 959.897 kb on + strand, within CSW01_19155at 959.900 kb on - strand, within CSW01_19155at 959.900 kb on - strand, within CSW01_19155at 959.900 kb on - strand, within CSW01_19155at 959.900 kb on - strand, within CSW01_19155at 959.902 kb on + strand, within CSW01_19155at 959.910 kb on - strand, within CSW01_19155at 959.991 kb on - strand, within CSW01_19155at 960.040 kb on + strandat 960.048 kb on - strandat 960.142 kb on - strandat 960.257 kb on + strandat 960.287 kb on + strandat 960.387 kb on - strand, within CSW01_19160

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1
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957,531 + CSW01_19145 0.16 -1.9
957,618 + CSW01_19145 0.25 -0.8
957,729 - CSW01_19145 0.36 +0.6
957,803 + CSW01_19145 0.44 +0.1
957,803 + CSW01_19145 0.44 -1.9
957,803 + CSW01_19145 0.44 +0.7
957,803 + CSW01_19145 0.44 +1.5
957,811 - CSW01_19145 0.44 +1.2
957,813 + CSW01_19145 0.45 -1.0
957,821 - CSW01_19145 0.45 +1.3
957,851 + CSW01_19145 0.48 +0.4
957,918 + CSW01_19145 0.55 +1.8
957,918 + CSW01_19145 0.55 +0.5
957,936 - CSW01_19145 0.57 +0.1
957,965 + CSW01_19145 0.60 +0.1
957,978 - CSW01_19145 0.61 -0.5
957,996 + CSW01_19145 0.63 -3.9
957,997 + CSW01_19145 0.63 +0.3
958,033 + CSW01_19145 0.67 -1.8
958,033 + CSW01_19145 0.67 +0.4
958,041 - CSW01_19145 0.68 +0.7
958,041 - CSW01_19145 0.68 -0.4
958,041 - CSW01_19145 0.68 +0.7
958,080 - CSW01_19145 0.71 -2.1
958,118 + CSW01_19145 0.75 -3.5
958,124 - CSW01_19145 0.76 +0.7
958,301 - -0.2
958,343 + +0.3
958,346 - +0.0
958,371 + +2.4
958,371 + +0.3
958,371 + -0.9
958,371 + -2.6
958,371 + -1.6
958,379 - +0.7
958,379 - +1.5
958,379 - -1.8
958,379 - -2.0
958,379 - -3.7
958,412 + -1.5
958,443 + -0.6
958,462 - +2.0
958,484 - -1.8
958,535 + -0.8
958,590 + -2.8
958,616 - CSW01_19150 0.10 -0.2
958,635 + CSW01_19150 0.12 -0.8
958,656 + CSW01_19150 0.15 +1.0
958,659 - CSW01_19150 0.15 -2.5
958,659 - CSW01_19150 0.15 -1.3
958,828 + CSW01_19150 0.34 +0.8
958,838 + CSW01_19150 0.35 -3.3
958,873 - CSW01_19150 0.39 -1.1
958,878 - CSW01_19150 0.39 -1.4
958,878 - CSW01_19150 0.39 +1.2
958,883 - CSW01_19150 0.40 -0.8
958,883 - CSW01_19150 0.40 +0.3
958,959 - CSW01_19150 0.48 -2.9
959,015 - CSW01_19150 0.55 +0.8
959,083 + CSW01_19150 0.62 +0.0
959,171 + CSW01_19150 0.72 +0.2
959,183 + CSW01_19150 0.73 +4.1
959,183 + CSW01_19150 0.73 +2.0
959,184 - CSW01_19150 0.74 -2.9
959,191 - CSW01_19150 0.74 -0.8
959,319 - CSW01_19150 0.89 -2.0
959,497 + -0.4
959,505 - +0.0
959,555 - CSW01_19155 0.17 +0.2
959,651 - CSW01_19155 0.32 -1.5
959,710 - CSW01_19155 0.41 +0.2
959,728 - CSW01_19155 0.44 +1.6
959,728 - CSW01_19155 0.44 +0.6
959,735 + CSW01_19155 0.45 +1.6
959,735 + CSW01_19155 0.45 +0.2
959,735 + CSW01_19155 0.45 -2.3
959,741 - CSW01_19155 0.46 -0.0
959,743 - CSW01_19155 0.46 -0.3
959,860 + CSW01_19155 0.65 +0.6
959,897 + CSW01_19155 0.70 -0.0
959,897 + CSW01_19155 0.70 +0.5
959,897 + CSW01_19155 0.70 +1.3
959,900 - CSW01_19155 0.71 -0.1
959,900 - CSW01_19155 0.71 +1.1
959,900 - CSW01_19155 0.71 +0.8
959,900 - CSW01_19155 0.71 +1.4
959,902 + CSW01_19155 0.71 +3.8
959,910 - CSW01_19155 0.72 -0.4
959,991 - CSW01_19155 0.85 -0.4
960,040 + -2.1
960,048 - -0.2
960,142 - +0.2
960,257 + +0.7
960,287 + +0.9
960,387 - CSW01_19160 0.19 +0.4

Or see this region's nucleotide sequence