Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18955

Experiment: ICP3_phage_0.41_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18950 and CSW01_18955 are separated by 2 nucleotidesCSW01_18955 and CSW01_18960 are separated by 174 nucleotides CSW01_18950: CSW01_18950 - GGDEF domain-containing protein, at 912,593 to 913,783 _18950 CSW01_18955: CSW01_18955 - hypothetical protein, at 913,786 to 914,082 _18955 CSW01_18960: CSW01_18960 - quercetin 2,3-dioxygenase, at 914,257 to 915,105 _18960 Position (kb) 913 914 915Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 912.832 kb on + strand, within CSW01_18950at 912.870 kb on + strand, within CSW01_18950at 912.870 kb on + strand, within CSW01_18950at 912.870 kb on + strand, within CSW01_18950at 912.870 kb on + strand, within CSW01_18950at 912.870 kb on + strand, within CSW01_18950at 912.870 kb on + strand, within CSW01_18950at 912.870 kb on + strand, within CSW01_18950at 912.870 kb on + strand, within CSW01_18950at 912.878 kb on - strand, within CSW01_18950at 912.878 kb on - strand, within CSW01_18950at 912.878 kb on - strand, within CSW01_18950at 912.878 kb on - strand, within CSW01_18950at 912.878 kb on - strand, within CSW01_18950at 912.878 kb on - strand, within CSW01_18950at 912.878 kb on - strand, within CSW01_18950at 912.878 kb on - strand, within CSW01_18950at 912.878 kb on - strand, within CSW01_18950at 912.878 kb on - strand, within CSW01_18950at 912.881 kb on + strand, within CSW01_18950at 912.886 kb on + strand, within CSW01_18950at 912.886 kb on + strand, within CSW01_18950at 912.888 kb on - strand, within CSW01_18950at 912.889 kb on + strand, within CSW01_18950at 912.889 kb on - strand, within CSW01_18950at 912.891 kb on + strand, within CSW01_18950at 912.891 kb on + strand, within CSW01_18950at 912.891 kb on + strand, within CSW01_18950at 912.899 kb on - strand, within CSW01_18950at 912.901 kb on + strand, within CSW01_18950at 912.901 kb on + strand, within CSW01_18950at 912.909 kb on - strand, within CSW01_18950at 912.924 kb on + strand, within CSW01_18950at 912.927 kb on - strand, within CSW01_18950at 912.932 kb on - strand, within CSW01_18950at 912.942 kb on + strand, within CSW01_18950at 912.950 kb on - strand, within CSW01_18950at 912.954 kb on + strand, within CSW01_18950at 912.955 kb on + strand, within CSW01_18950at 912.955 kb on + strand, within CSW01_18950at 912.963 kb on - strand, within CSW01_18950at 912.963 kb on - strand, within CSW01_18950at 912.963 kb on - strand, within CSW01_18950at 912.974 kb on + strand, within CSW01_18950at 912.979 kb on + strand, within CSW01_18950at 912.979 kb on + strand, within CSW01_18950at 912.979 kb on + strand, within CSW01_18950at 912.979 kb on + strand, within CSW01_18950at 912.979 kb on + strand, within CSW01_18950at 912.979 kb on + strand, within CSW01_18950at 912.987 kb on + strand, within CSW01_18950at 912.987 kb on + strand, within CSW01_18950at 912.987 kb on + strand, within CSW01_18950at 912.987 kb on - strand, within CSW01_18950at 912.992 kb on + strand, within CSW01_18950at 912.995 kb on - strand, within CSW01_18950at 912.995 kb on - strand, within CSW01_18950at 913.000 kb on - strand, within CSW01_18950at 913.000 kb on - strand, within CSW01_18950at 913.000 kb on - strand, within CSW01_18950at 913.007 kb on - strand, within CSW01_18950at 913.014 kb on + strand, within CSW01_18950at 913.022 kb on - strand, within CSW01_18950at 913.022 kb on - strand, within CSW01_18950at 913.045 kb on + strand, within CSW01_18950at 913.053 kb on + strand, within CSW01_18950at 913.053 kb on + strand, within CSW01_18950at 913.053 kb on - strand, within CSW01_18950at 913.061 kb on - strand, within CSW01_18950at 913.061 kb on - strand, within CSW01_18950at 913.061 kb on - strand, within CSW01_18950at 913.061 kb on - strand, within CSW01_18950at 913.061 kb on - strand, within CSW01_18950at 913.066 kb on - strand, within CSW01_18950at 913.102 kb on + strand, within CSW01_18950at 913.110 kb on - strand, within CSW01_18950at 913.110 kb on - strand, within CSW01_18950at 913.167 kb on + strand, within CSW01_18950at 913.169 kb on + strand, within CSW01_18950at 913.175 kb on - strand, within CSW01_18950at 913.180 kb on + strand, within CSW01_18950at 913.180 kb on + strand, within CSW01_18950at 913.180 kb on + strand, within CSW01_18950at 913.188 kb on - strand, within CSW01_18950at 913.188 kb on - strand, within CSW01_18950at 913.188 kb on - strand, within CSW01_18950at 913.188 kb on - strand, within CSW01_18950at 913.188 kb on - strand, within CSW01_18950at 913.202 kb on + strand, within CSW01_18950at 913.210 kb on - strand, within CSW01_18950at 913.214 kb on + strand, within CSW01_18950at 913.253 kb on + strand, within CSW01_18950at 913.272 kb on + strand, within CSW01_18950at 913.280 kb on - strand, within CSW01_18950at 913.332 kb on + strand, within CSW01_18950at 913.332 kb on + strand, within CSW01_18950at 913.332 kb on + strand, within CSW01_18950at 913.332 kb on + strand, within CSW01_18950at 913.332 kb on + strand, within CSW01_18950at 913.332 kb on + strand, within CSW01_18950at 913.332 kb on + strand, within CSW01_18950at 913.332 kb on + strand, within CSW01_18950at 913.332 kb on + strand, within CSW01_18950at 913.332 kb on + strand, within CSW01_18950at 913.340 kb on - strand, within CSW01_18950at 913.340 kb on - strand, within CSW01_18950at 913.340 kb on - strand, within CSW01_18950at 913.340 kb on - strand, within CSW01_18950at 913.340 kb on - strand, within CSW01_18950at 913.465 kb on + strand, within CSW01_18950at 913.465 kb on + strand, within CSW01_18950at 913.465 kb on + strand, within CSW01_18950at 913.465 kb on + strand, within CSW01_18950at 913.473 kb on - strand, within CSW01_18950at 913.473 kb on - strand, within CSW01_18950at 913.473 kb on - strand, within CSW01_18950at 913.473 kb on - strand, within CSW01_18950at 913.505 kb on - strand, within CSW01_18950at 913.542 kb on - strand, within CSW01_18950at 913.573 kb on + strand, within CSW01_18950at 913.575 kb on + strand, within CSW01_18950at 913.581 kb on - strand, within CSW01_18950at 913.581 kb on - strand, within CSW01_18950at 913.583 kb on - strand, within CSW01_18950at 913.583 kb on - strand, within CSW01_18950at 913.619 kb on + strand, within CSW01_18950at 913.627 kb on - strand, within CSW01_18950at 913.628 kb on - strand, within CSW01_18950at 913.637 kb on + strand, within CSW01_18950at 913.661 kb on - strand, within CSW01_18950at 913.724 kb on + strandat 913.782 kb on + strandat 913.856 kb on + strand, within CSW01_18955at 913.856 kb on + strand, within CSW01_18955at 913.856 kb on + strand, within CSW01_18955at 913.856 kb on + strand, within CSW01_18955at 913.856 kb on + strand, within CSW01_18955at 913.856 kb on + strand, within CSW01_18955at 913.856 kb on + strand, within CSW01_18955at 913.856 kb on + strand, within CSW01_18955at 913.864 kb on - strand, within CSW01_18955at 913.864 kb on - strand, within CSW01_18955at 913.864 kb on - strand, within CSW01_18955at 913.864 kb on - strand, within CSW01_18955at 913.864 kb on - strand, within CSW01_18955at 913.864 kb on - strand, within CSW01_18955at 913.864 kb on - strand, within CSW01_18955at 913.864 kb on - strand, within CSW01_18955at 913.864 kb on - strand, within CSW01_18955at 913.952 kb on + strand, within CSW01_18955at 913.952 kb on + strand, within CSW01_18955at 913.960 kb on - strand, within CSW01_18955at 913.970 kb on - strand, within CSW01_18955at 913.996 kb on - strand, within CSW01_18955at 914.134 kb on + strandat 914.134 kb on + strandat 914.237 kb on + strandat 914.245 kb on - strandat 914.246 kb on + strandat 914.261 kb on - strandat 914.268 kb on - strandat 914.306 kb on - strandat 914.306 kb on - strandat 914.431 kb on + strand, within CSW01_18960at 914.563 kb on - strand, within CSW01_18960at 914.565 kb on - strand, within CSW01_18960at 914.615 kb on + strand, within CSW01_18960at 914.623 kb on - strand, within CSW01_18960at 914.707 kb on + strand, within CSW01_18960at 914.707 kb on + strand, within CSW01_18960at 914.715 kb on - strand, within CSW01_18960at 914.715 kb on - strand, within CSW01_18960at 914.715 kb on - strand, within CSW01_18960at 914.739 kb on + strand, within CSW01_18960at 914.746 kb on - strand, within CSW01_18960at 914.774 kb on + strand, within CSW01_18960at 914.777 kb on - strand, within CSW01_18960at 914.782 kb on - strand, within CSW01_18960at 914.891 kb on + strand, within CSW01_18960at 914.907 kb on - strand, within CSW01_18960at 914.909 kb on + strand, within CSW01_18960at 914.912 kb on - strand, within CSW01_18960at 914.941 kb on + strand, within CSW01_18960at 914.944 kb on - strand, within CSW01_18960at 914.954 kb on + strand, within CSW01_18960at 914.962 kb on + strand, within CSW01_18960

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1
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912,832 + CSW01_18950 0.20 -2.1
912,870 + CSW01_18950 0.23 -1.2
912,870 + CSW01_18950 0.23 -1.7
912,870 + CSW01_18950 0.23 -1.0
912,870 + CSW01_18950 0.23 -1.7
912,870 + CSW01_18950 0.23 +0.8
912,870 + CSW01_18950 0.23 +0.3
912,870 + CSW01_18950 0.23 -0.1
912,870 + CSW01_18950 0.23 -0.4
912,878 - CSW01_18950 0.24 +1.5
912,878 - CSW01_18950 0.24 -0.4
912,878 - CSW01_18950 0.24 +0.2
912,878 - CSW01_18950 0.24 +0.2
912,878 - CSW01_18950 0.24 -1.8
912,878 - CSW01_18950 0.24 +2.3
912,878 - CSW01_18950 0.24 -2.2
912,878 - CSW01_18950 0.24 +0.2
912,878 - CSW01_18950 0.24 +0.9
912,878 - CSW01_18950 0.24 +0.8
912,881 + CSW01_18950 0.24 +1.5
912,886 + CSW01_18950 0.25 +1.0
912,886 + CSW01_18950 0.25 +1.4
912,888 - CSW01_18950 0.25 +0.3
912,889 + CSW01_18950 0.25 +1.5
912,889 - CSW01_18950 0.25 +0.3
912,891 + CSW01_18950 0.25 -0.4
912,891 + CSW01_18950 0.25 +1.3
912,891 + CSW01_18950 0.25 -1.7
912,899 - CSW01_18950 0.26 -1.2
912,901 + CSW01_18950 0.26 +1.7
912,901 + CSW01_18950 0.26 -0.3
912,909 - CSW01_18950 0.27 -0.2
912,924 + CSW01_18950 0.28 -0.1
912,927 - CSW01_18950 0.28 +0.8
912,932 - CSW01_18950 0.28 +0.3
912,942 + CSW01_18950 0.29 -2.6
912,950 - CSW01_18950 0.30 +0.5
912,954 + CSW01_18950 0.30 +0.1
912,955 + CSW01_18950 0.30 +0.5
912,955 + CSW01_18950 0.30 +1.6
912,963 - CSW01_18950 0.31 +1.2
912,963 - CSW01_18950 0.31 +1.1
912,963 - CSW01_18950 0.31 +0.6
912,974 + CSW01_18950 0.32 -0.5
912,979 + CSW01_18950 0.32 +0.8
912,979 + CSW01_18950 0.32 +0.4
912,979 + CSW01_18950 0.32 +1.8
912,979 + CSW01_18950 0.32 +0.3
912,979 + CSW01_18950 0.32 -3.5
912,979 + CSW01_18950 0.32 -3.4
912,987 + CSW01_18950 0.33 -3.4
912,987 + CSW01_18950 0.33 -2.5
912,987 + CSW01_18950 0.33 +1.3
912,987 - CSW01_18950 0.33 -1.1
912,992 + CSW01_18950 0.34 +0.9
912,995 - CSW01_18950 0.34 +1.7
912,995 - CSW01_18950 0.34 +1.1
913,000 - CSW01_18950 0.34 +0.5
913,000 - CSW01_18950 0.34 -1.9
913,000 - CSW01_18950 0.34 +0.9
913,007 - CSW01_18950 0.35 +0.2
913,014 + CSW01_18950 0.35 +0.2
913,022 - CSW01_18950 0.36 +0.4
913,022 - CSW01_18950 0.36 +0.7
913,045 + CSW01_18950 0.38 +0.6
913,053 + CSW01_18950 0.39 +0.5
913,053 + CSW01_18950 0.39 -4.7
913,053 - CSW01_18950 0.39 -0.1
913,061 - CSW01_18950 0.39 -0.1
913,061 - CSW01_18950 0.39 -3.0
913,061 - CSW01_18950 0.39 +0.7
913,061 - CSW01_18950 0.39 -0.1
913,061 - CSW01_18950 0.39 -3.3
913,066 - CSW01_18950 0.40 +1.2
913,102 + CSW01_18950 0.43 -0.4
913,110 - CSW01_18950 0.43 -3.0
913,110 - CSW01_18950 0.43 +0.0
913,167 + CSW01_18950 0.48 +1.6
913,169 + CSW01_18950 0.48 +0.9
913,175 - CSW01_18950 0.49 +1.5
913,180 + CSW01_18950 0.49 -0.2
913,180 + CSW01_18950 0.49 +1.1
913,180 + CSW01_18950 0.49 +1.0
913,188 - CSW01_18950 0.50 -3.6
913,188 - CSW01_18950 0.50 -3.5
913,188 - CSW01_18950 0.50 +1.1
913,188 - CSW01_18950 0.50 +0.6
913,188 - CSW01_18950 0.50 -0.3
913,202 + CSW01_18950 0.51 +1.8
913,210 - CSW01_18950 0.52 -0.3
913,214 + CSW01_18950 0.52 -0.4
913,253 + CSW01_18950 0.55 -2.8
913,272 + CSW01_18950 0.57 -2.2
913,280 - CSW01_18950 0.58 +1.5
913,332 + CSW01_18950 0.62 +0.3
913,332 + CSW01_18950 0.62 -1.4
913,332 + CSW01_18950 0.62 -2.0
913,332 + CSW01_18950 0.62 -2.0
913,332 + CSW01_18950 0.62 -2.9
913,332 + CSW01_18950 0.62 -0.3
913,332 + CSW01_18950 0.62 -0.5
913,332 + CSW01_18950 0.62 -1.8
913,332 + CSW01_18950 0.62 +0.0
913,332 + CSW01_18950 0.62 +0.4
913,340 - CSW01_18950 0.63 -0.1
913,340 - CSW01_18950 0.63 +0.2
913,340 - CSW01_18950 0.63 -0.4
913,340 - CSW01_18950 0.63 +1.2
913,340 - CSW01_18950 0.63 +1.0
913,465 + CSW01_18950 0.73 +0.8
913,465 + CSW01_18950 0.73 -0.2
913,465 + CSW01_18950 0.73 -2.6
913,465 + CSW01_18950 0.73 +0.4
913,473 - CSW01_18950 0.74 +1.7
913,473 - CSW01_18950 0.74 -0.2
913,473 - CSW01_18950 0.74 -1.9
913,473 - CSW01_18950 0.74 -2.1
913,505 - CSW01_18950 0.77 +1.0
913,542 - CSW01_18950 0.80 -0.2
913,573 + CSW01_18950 0.82 -3.2
913,575 + CSW01_18950 0.82 -0.6
913,581 - CSW01_18950 0.83 -0.2
913,581 - CSW01_18950 0.83 +0.4
913,583 - CSW01_18950 0.83 +0.8
913,583 - CSW01_18950 0.83 -0.9
913,619 + CSW01_18950 0.86 +1.8
913,627 - CSW01_18950 0.87 -1.1
913,628 - CSW01_18950 0.87 +0.1
913,637 + CSW01_18950 0.88 +0.5
913,661 - CSW01_18950 0.90 +0.1
913,724 + +0.3
913,782 + -0.5
913,856 + CSW01_18955 0.24 -3.6
913,856 + CSW01_18955 0.24 +0.7
913,856 + CSW01_18955 0.24 -1.4
913,856 + CSW01_18955 0.24 +0.0
913,856 + CSW01_18955 0.24 -2.1
913,856 + CSW01_18955 0.24 +0.1
913,856 + CSW01_18955 0.24 +0.7
913,856 + CSW01_18955 0.24 +0.6
913,864 - CSW01_18955 0.26 +0.4
913,864 - CSW01_18955 0.26 -1.0
913,864 - CSW01_18955 0.26 -0.8
913,864 - CSW01_18955 0.26 -2.1
913,864 - CSW01_18955 0.26 -1.8
913,864 - CSW01_18955 0.26 -2.5
913,864 - CSW01_18955 0.26 +1.2
913,864 - CSW01_18955 0.26 +0.1
913,864 - CSW01_18955 0.26 +0.6
913,952 + CSW01_18955 0.56 +1.1
913,952 + CSW01_18955 0.56 -1.4
913,960 - CSW01_18955 0.59 +0.7
913,970 - CSW01_18955 0.62 -2.5
913,996 - CSW01_18955 0.71 +2.0
914,134 + -1.0
914,134 + +0.1
914,237 + +1.3
914,245 - +1.6
914,246 + -1.1
914,261 - +0.5
914,268 - -1.7
914,306 - +1.6
914,306 - +1.0
914,431 + CSW01_18960 0.20 -1.4
914,563 - CSW01_18960 0.36 -0.6
914,565 - CSW01_18960 0.36 +1.8
914,615 + CSW01_18960 0.42 +0.4
914,623 - CSW01_18960 0.43 +1.0
914,707 + CSW01_18960 0.53 +1.2
914,707 + CSW01_18960 0.53 +0.4
914,715 - CSW01_18960 0.54 -0.0
914,715 - CSW01_18960 0.54 +0.4
914,715 - CSW01_18960 0.54 +0.1
914,739 + CSW01_18960 0.57 -0.5
914,746 - CSW01_18960 0.58 -3.4
914,774 + CSW01_18960 0.61 -1.4
914,777 - CSW01_18960 0.61 +0.6
914,782 - CSW01_18960 0.62 -2.7
914,891 + CSW01_18960 0.75 -0.4
914,907 - CSW01_18960 0.77 +1.2
914,909 + CSW01_18960 0.77 -0.4
914,912 - CSW01_18960 0.77 -0.2
914,941 + CSW01_18960 0.81 +2.1
914,944 - CSW01_18960 0.81 +0.8
914,954 + CSW01_18960 0.82 -1.4
914,962 + CSW01_18960 0.83 -0.8

Or see this region's nucleotide sequence