Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18815

Experiment: ICP3_phage_0.41_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18810 and CSW01_18815 overlap by 12 nucleotidesCSW01_18815 and CSW01_18820 are separated by 99 nucleotides CSW01_18810: CSW01_18810 - DUF2817 domain-containing protein, at 885,605 to 886,543 _18810 CSW01_18815: CSW01_18815 - AraC family transcriptional regulator, at 886,532 to 887,323 _18815 CSW01_18820: CSW01_18820 - EamA/RhaT family transporter, at 887,423 to 888,322 _18820 Position (kb) 886 887 888Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 885.541 kb on + strandat 885.574 kb on - strandat 885.630 kb on - strandat 885.649 kb on + strandat 885.675 kb on - strandat 885.765 kb on + strand, within CSW01_18810at 885.853 kb on + strand, within CSW01_18810at 885.864 kb on + strand, within CSW01_18810at 885.874 kb on - strand, within CSW01_18810at 885.942 kb on + strand, within CSW01_18810at 886.050 kb on - strand, within CSW01_18810at 886.064 kb on + strand, within CSW01_18810at 886.110 kb on + strand, within CSW01_18810at 886.118 kb on - strand, within CSW01_18810at 886.178 kb on + strand, within CSW01_18810at 886.178 kb on + strand, within CSW01_18810at 886.186 kb on - strand, within CSW01_18810at 886.188 kb on + strand, within CSW01_18810at 886.204 kb on - strand, within CSW01_18810at 886.213 kb on + strand, within CSW01_18810at 886.440 kb on + strand, within CSW01_18810at 886.440 kb on + strand, within CSW01_18810at 886.440 kb on + strand, within CSW01_18810at 886.440 kb on + strand, within CSW01_18810at 886.440 kb on + strand, within CSW01_18810at 886.440 kb on + strand, within CSW01_18810at 886.448 kb on - strand, within CSW01_18810at 886.448 kb on - strand, within CSW01_18810at 886.454 kb on + strandat 886.454 kb on + strandat 886.460 kb on - strandat 886.470 kb on - strandat 886.497 kb on - strandat 886.613 kb on + strand, within CSW01_18815at 886.615 kb on - strand, within CSW01_18815at 886.625 kb on + strand, within CSW01_18815at 886.625 kb on + strand, within CSW01_18815at 886.627 kb on - strand, within CSW01_18815at 886.633 kb on - strand, within CSW01_18815at 886.652 kb on + strand, within CSW01_18815at 886.726 kb on - strand, within CSW01_18815at 886.907 kb on + strand, within CSW01_18815at 886.927 kb on + strand, within CSW01_18815at 886.942 kb on - strand, within CSW01_18815at 886.952 kb on - strand, within CSW01_18815at 886.952 kb on - strand, within CSW01_18815at 887.033 kb on + strand, within CSW01_18815at 887.046 kb on + strand, within CSW01_18815at 887.144 kb on - strand, within CSW01_18815at 887.558 kb on - strand, within CSW01_18820at 887.569 kb on + strand, within CSW01_18820at 887.569 kb on + strand, within CSW01_18820at 887.577 kb on - strand, within CSW01_18820at 887.577 kb on - strand, within CSW01_18820at 887.577 kb on - strand, within CSW01_18820at 887.577 kb on - strand, within CSW01_18820at 887.589 kb on + strand, within CSW01_18820at 887.675 kb on + strand, within CSW01_18820at 887.811 kb on + strand, within CSW01_18820at 887.819 kb on - strand, within CSW01_18820at 887.880 kb on + strand, within CSW01_18820at 887.880 kb on + strand, within CSW01_18820at 887.888 kb on - strand, within CSW01_18820at 887.888 kb on - strand, within CSW01_18820at 887.890 kb on + strand, within CSW01_18820at 887.902 kb on + strand, within CSW01_18820at 887.909 kb on + strand, within CSW01_18820at 887.910 kb on - strand, within CSW01_18820at 887.917 kb on - strand, within CSW01_18820at 887.917 kb on - strand, within CSW01_18820at 888.006 kb on + strand, within CSW01_18820at 888.014 kb on - strand, within CSW01_18820at 888.095 kb on + strand, within CSW01_18820at 888.103 kb on - strand, within CSW01_18820

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1
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885,541 + -1.0
885,574 - +0.5
885,630 - -0.0
885,649 + +1.6
885,675 - -2.5
885,765 + CSW01_18810 0.17 -1.2
885,853 + CSW01_18810 0.26 -2.5
885,864 + CSW01_18810 0.28 +1.9
885,874 - CSW01_18810 0.29 +0.9
885,942 + CSW01_18810 0.36 +0.6
886,050 - CSW01_18810 0.47 +0.2
886,064 + CSW01_18810 0.49 -2.5
886,110 + CSW01_18810 0.54 -0.3
886,118 - CSW01_18810 0.55 -0.7
886,178 + CSW01_18810 0.61 -2.7
886,178 + CSW01_18810 0.61 -1.8
886,186 - CSW01_18810 0.62 +0.4
886,188 + CSW01_18810 0.62 +1.4
886,204 - CSW01_18810 0.64 +1.0
886,213 + CSW01_18810 0.65 +0.2
886,440 + CSW01_18810 0.89 -2.3
886,440 + CSW01_18810 0.89 -0.4
886,440 + CSW01_18810 0.89 +1.4
886,440 + CSW01_18810 0.89 -1.3
886,440 + CSW01_18810 0.89 -3.2
886,440 + CSW01_18810 0.89 -3.1
886,448 - CSW01_18810 0.90 +1.2
886,448 - CSW01_18810 0.90 +1.5
886,454 + +0.9
886,454 + -2.1
886,460 - +1.0
886,470 - -1.8
886,497 - -1.7
886,613 + CSW01_18815 0.10 -1.5
886,615 - CSW01_18815 0.10 +0.9
886,625 + CSW01_18815 0.12 +1.1
886,625 + CSW01_18815 0.12 -0.4
886,627 - CSW01_18815 0.12 -1.8
886,633 - CSW01_18815 0.13 +0.0
886,652 + CSW01_18815 0.15 -0.7
886,726 - CSW01_18815 0.24 -3.4
886,907 + CSW01_18815 0.47 -1.2
886,927 + CSW01_18815 0.50 +1.1
886,942 - CSW01_18815 0.52 +0.9
886,952 - CSW01_18815 0.53 +2.2
886,952 - CSW01_18815 0.53 +0.1
887,033 + CSW01_18815 0.63 +0.7
887,046 + CSW01_18815 0.65 +1.5
887,144 - CSW01_18815 0.77 +0.4
887,558 - CSW01_18820 0.15 -0.6
887,569 + CSW01_18820 0.16 -1.7
887,569 + CSW01_18820 0.16 -2.2
887,577 - CSW01_18820 0.17 -0.1
887,577 - CSW01_18820 0.17 -0.3
887,577 - CSW01_18820 0.17 +1.4
887,577 - CSW01_18820 0.17 -1.6
887,589 + CSW01_18820 0.18 +1.6
887,675 + CSW01_18820 0.28 +1.0
887,811 + CSW01_18820 0.43 +0.3
887,819 - CSW01_18820 0.44 +0.9
887,880 + CSW01_18820 0.51 +0.1
887,880 + CSW01_18820 0.51 +1.4
887,888 - CSW01_18820 0.52 -0.0
887,888 - CSW01_18820 0.52 -1.0
887,890 + CSW01_18820 0.52 +2.4
887,902 + CSW01_18820 0.53 -0.9
887,909 + CSW01_18820 0.54 -1.0
887,910 - CSW01_18820 0.54 -4.0
887,917 - CSW01_18820 0.55 +1.3
887,917 - CSW01_18820 0.55 -0.2
888,006 + CSW01_18820 0.65 +0.8
888,014 - CSW01_18820 0.66 -0.3
888,095 + CSW01_18820 0.75 +1.6
888,103 - CSW01_18820 0.76 +0.6

Or see this region's nucleotide sequence