Experiment: ICP3_phage_0.41_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18520 and CSW01_18525 are separated by 107 nucleotides CSW01_18525 and CSW01_18530 are separated by 628 nucleotides CSW01_18530 and CSW01_18535 are separated by 24 nucleotides CSW01_18535 and CSW01_18540 are separated by 11 nucleotides
CSW01_18520: CSW01_18520 - linear amide C-N hydrolase, at 828,897 to 829,973
_18520
CSW01_18525: CSW01_18525 - integrase, at 830,081 to 830,242
_18525
CSW01_18530: CSW01_18530 - hypothetical protein, at 830,871 to 831,251
_18530
CSW01_18535: CSW01_18535 - hypothetical protein, at 831,276 to 831,671
_18535
CSW01_18540: CSW01_18540 - hypothetical protein, at 831,683 to 832,747
_18540
Position (kb) 830
831
832 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 829.893 kb on + strand at 829.906 kb on - strand at 829.940 kb on + strand at 829.971 kb on - strand at 830.040 kb on + strand at 830.106 kb on - strand, within CSW01_18525 at 830.146 kb on - strand, within CSW01_18525 at 830.206 kb on + strand, within CSW01_18525 at 830.243 kb on - strand at 830.282 kb on + strand at 830.308 kb on - strand at 830.342 kb on + strand at 830.397 kb on + strand at 830.397 kb on + strand at 830.397 kb on + strand at 830.397 kb on + strand at 830.397 kb on + strand at 830.397 kb on + strand at 830.397 kb on + strand at 830.397 kb on + strand at 830.397 kb on + strand at 830.397 kb on + strand at 830.404 kb on - strand at 830.405 kb on - strand at 830.405 kb on - strand at 830.405 kb on - strand at 830.436 kb on - strand at 830.674 kb on + strand at 830.688 kb on + strand at 830.813 kb on + strand at 830.813 kb on + strand at 830.813 kb on + strand at 830.813 kb on + strand at 830.813 kb on + strand at 830.813 kb on + strand at 830.813 kb on + strand at 830.823 kb on + strand at 830.823 kb on + strand at 830.823 kb on + strand at 830.828 kb on + strand at 830.828 kb on + strand at 830.828 kb on + strand at 830.831 kb on - strand at 830.835 kb on - strand at 830.836 kb on - strand at 830.909 kb on - strand, within CSW01_18530 at 830.919 kb on - strand, within CSW01_18530 at 830.921 kb on - strand, within CSW01_18530 at 830.923 kb on + strand, within CSW01_18530 at 830.931 kb on - strand, within CSW01_18530 at 830.963 kb on - strand, within CSW01_18530 at 830.971 kb on - strand, within CSW01_18530 at 830.981 kb on + strand, within CSW01_18530 at 830.981 kb on + strand, within CSW01_18530 at 830.990 kb on - strand, within CSW01_18530 at 830.994 kb on + strand, within CSW01_18530 at 830.997 kb on - strand, within CSW01_18530 at 831.000 kb on + strand, within CSW01_18530 at 831.002 kb on - strand, within CSW01_18530 at 831.002 kb on - strand, within CSW01_18530 at 831.002 kb on - strand, within CSW01_18530 at 831.002 kb on - strand, within CSW01_18530 at 831.008 kb on - strand, within CSW01_18530 at 831.019 kb on - strand, within CSW01_18530 at 831.034 kb on - strand, within CSW01_18530 at 831.083 kb on + strand, within CSW01_18530 at 831.092 kb on + strand, within CSW01_18530 at 831.129 kb on + strand, within CSW01_18530 at 831.143 kb on + strand, within CSW01_18530 at 831.151 kb on + strand, within CSW01_18530 at 831.151 kb on - strand, within CSW01_18530 at 831.153 kb on + strand, within CSW01_18530 at 831.153 kb on + strand, within CSW01_18530 at 831.153 kb on + strand, within CSW01_18530 at 831.153 kb on + strand, within CSW01_18530 at 831.153 kb on + strand, within CSW01_18530 at 831.153 kb on + strand, within CSW01_18530 at 831.153 kb on + strand, within CSW01_18530 at 831.153 kb on + strand, within CSW01_18530 at 831.153 kb on + strand, within CSW01_18530 at 831.153 kb on + strand, within CSW01_18530 at 831.153 kb on + strand, within CSW01_18530 at 831.153 kb on + strand, within CSW01_18530 at 831.153 kb on + strand, within CSW01_18530 at 831.153 kb on + strand, within CSW01_18530 at 831.153 kb on + strand, within CSW01_18530 at 831.153 kb on + strand, within CSW01_18530 at 831.153 kb on + strand, within CSW01_18530 at 831.161 kb on - strand, within CSW01_18530 at 831.161 kb on - strand, within CSW01_18530 at 831.161 kb on - strand, within CSW01_18530 at 831.161 kb on - strand, within CSW01_18530 at 831.161 kb on - strand, within CSW01_18530 at 831.161 kb on - strand, within CSW01_18530 at 831.161 kb on - strand, within CSW01_18530 at 831.161 kb on - strand, within CSW01_18530 at 831.161 kb on - strand, within CSW01_18530 at 831.161 kb on - strand, within CSW01_18530 at 831.161 kb on - strand, within CSW01_18530 at 831.161 kb on - strand, within CSW01_18530 at 831.161 kb on - strand, within CSW01_18530 at 831.161 kb on - strand, within CSW01_18530 at 831.161 kb on - strand, within CSW01_18530 at 831.161 kb on - strand, within CSW01_18530 at 831.161 kb on - strand, within CSW01_18530 at 831.161 kb on - strand, within CSW01_18530 at 831.161 kb on - strand, within CSW01_18530 at 831.161 kb on - strand, within CSW01_18530 at 831.161 kb on - strand, within CSW01_18530 at 831.161 kb on - strand, within CSW01_18530 at 831.161 kb on - strand, within CSW01_18530 at 831.161 kb on - strand, within CSW01_18530 at 831.164 kb on + strand, within CSW01_18530 at 831.170 kb on - strand, within CSW01_18530 at 831.172 kb on - strand, within CSW01_18530 at 831.172 kb on - strand, within CSW01_18530 at 831.183 kb on + strand, within CSW01_18530 at 831.183 kb on + strand, within CSW01_18530 at 831.216 kb on + strand at 831.310 kb on - strand at 831.336 kb on - strand, within CSW01_18535 at 831.344 kb on - strand, within CSW01_18535 at 831.386 kb on - strand, within CSW01_18535 at 831.393 kb on + strand, within CSW01_18535 at 831.404 kb on + strand, within CSW01_18535 at 831.404 kb on + strand, within CSW01_18535 at 831.404 kb on + strand, within CSW01_18535 at 831.404 kb on + strand, within CSW01_18535 at 831.408 kb on + strand, within CSW01_18535 at 831.432 kb on + strand, within CSW01_18535 at 831.495 kb on + strand, within CSW01_18535 at 831.537 kb on + strand, within CSW01_18535 at 831.545 kb on - strand, within CSW01_18535 at 831.562 kb on - strand, within CSW01_18535 at 831.562 kb on - strand, within CSW01_18535 at 831.577 kb on - strand, within CSW01_18535 at 831.582 kb on + strand, within CSW01_18535 at 831.582 kb on + strand, within CSW01_18535 at 831.582 kb on + strand, within CSW01_18535 at 831.582 kb on + strand, within CSW01_18535 at 831.582 kb on + strand, within CSW01_18535 at 831.582 kb on + strand, within CSW01_18535 at 831.587 kb on + strand, within CSW01_18535 at 831.590 kb on - strand, within CSW01_18535 at 831.590 kb on - strand, within CSW01_18535 at 831.590 kb on - strand, within CSW01_18535 at 831.590 kb on - strand, within CSW01_18535 at 831.592 kb on + strand, within CSW01_18535 at 831.592 kb on + strand, within CSW01_18535 at 831.592 kb on + strand, within CSW01_18535 at 831.595 kb on + strand, within CSW01_18535 at 831.595 kb on - strand, within CSW01_18535 at 831.597 kb on + strand, within CSW01_18535 at 831.597 kb on + strand, within CSW01_18535 at 831.597 kb on + strand, within CSW01_18535 at 831.597 kb on + strand, within CSW01_18535 at 831.600 kb on - strand, within CSW01_18535 at 831.600 kb on - strand, within CSW01_18535 at 831.600 kb on - strand, within CSW01_18535 at 831.605 kb on - strand, within CSW01_18535 at 831.605 kb on - strand, within CSW01_18535 at 831.606 kb on + strand, within CSW01_18535 at 831.613 kb on - strand, within CSW01_18535 at 831.676 kb on - strand at 831.680 kb on + strand at 831.682 kb on - strand at 831.708 kb on + strand at 831.716 kb on + strand at 831.724 kb on - strand at 831.841 kb on + strand, within CSW01_18540 at 831.842 kb on - strand, within CSW01_18540 at 831.864 kb on + strand, within CSW01_18540 at 831.872 kb on - strand, within CSW01_18540 at 831.940 kb on - strand, within CSW01_18540 at 831.977 kb on - strand, within CSW01_18540 at 831.984 kb on - strand, within CSW01_18540 at 832.107 kb on + strand, within CSW01_18540 at 832.151 kb on + strand, within CSW01_18540 at 832.159 kb on - strand, within CSW01_18540 at 832.177 kb on - strand, within CSW01_18540
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1 remove 829,893 + +1.4 829,906 - +0.2 829,940 + -1.5 829,971 - -1.8 830,040 + -0.1 830,106 - CSW01_18525 0.15 +0.5 830,146 - CSW01_18525 0.40 -1.3 830,206 + CSW01_18525 0.77 -0.7 830,243 - -1.2 830,282 + +0.5 830,308 - +1.4 830,342 + +0.7 830,397 + +0.6 830,397 + -0.6 830,397 + +2.2 830,397 + -0.3 830,397 + -1.3 830,397 + +0.7 830,397 + +1.7 830,397 + +1.1 830,397 + -0.6 830,397 + +0.5 830,404 - +0.1 830,405 - +2.5 830,405 - +1.4 830,405 - -1.9 830,436 - +1.1 830,674 + +0.9 830,688 + -0.1 830,813 + -3.0 830,813 + +2.5 830,813 + +0.9 830,813 + -0.5 830,813 + -1.1 830,813 + -3.6 830,813 + -0.8 830,823 + -2.3 830,823 + +0.2 830,823 + -0.4 830,828 + -0.4 830,828 + +0.7 830,828 + -2.6 830,831 - +1.3 830,835 - -1.1 830,836 - -1.0 830,909 - CSW01_18530 0.10 -0.0 830,919 - CSW01_18530 0.13 +0.5 830,921 - CSW01_18530 0.13 -2.8 830,923 + CSW01_18530 0.14 -0.9 830,931 - CSW01_18530 0.16 -2.7 830,963 - CSW01_18530 0.24 +0.1 830,971 - CSW01_18530 0.26 -0.1 830,981 + CSW01_18530 0.29 -0.6 830,981 + CSW01_18530 0.29 -3.3 830,990 - CSW01_18530 0.31 +0.4 830,994 + CSW01_18530 0.32 -2.0 830,997 - CSW01_18530 0.33 -1.0 831,000 + CSW01_18530 0.34 +0.4 831,002 - CSW01_18530 0.34 +0.3 831,002 - CSW01_18530 0.34 -2.0 831,002 - CSW01_18530 0.34 -1.8 831,002 - CSW01_18530 0.34 +0.2 831,008 - CSW01_18530 0.36 -2.6 831,019 - CSW01_18530 0.39 +0.3 831,034 - CSW01_18530 0.43 -0.6 831,083 + CSW01_18530 0.56 -2.5 831,092 + CSW01_18530 0.58 +1.4 831,129 + CSW01_18530 0.68 -1.3 831,143 + CSW01_18530 0.71 +0.9 831,151 + CSW01_18530 0.73 +1.2 831,151 - CSW01_18530 0.73 +0.5 831,153 + CSW01_18530 0.74 +0.6 831,153 + CSW01_18530 0.74 -0.7 831,153 + CSW01_18530 0.74 -2.5 831,153 + CSW01_18530 0.74 +2.1 831,153 + CSW01_18530 0.74 -1.2 831,153 + CSW01_18530 0.74 -0.0 831,153 + CSW01_18530 0.74 -0.3 831,153 + CSW01_18530 0.74 -1.0 831,153 + CSW01_18530 0.74 -2.9 831,153 + CSW01_18530 0.74 +1.7 831,153 + CSW01_18530 0.74 -0.3 831,153 + CSW01_18530 0.74 +0.5 831,153 + CSW01_18530 0.74 +1.6 831,153 + CSW01_18530 0.74 +0.4 831,153 + CSW01_18530 0.74 +0.9 831,153 + CSW01_18530 0.74 -0.3 831,153 + CSW01_18530 0.74 +0.9 831,161 - CSW01_18530 0.76 -1.7 831,161 - CSW01_18530 0.76 +2.0 831,161 - CSW01_18530 0.76 +0.5 831,161 - CSW01_18530 0.76 -1.3 831,161 - CSW01_18530 0.76 -0.7 831,161 - CSW01_18530 0.76 +0.6 831,161 - CSW01_18530 0.76 +0.2 831,161 - CSW01_18530 0.76 +0.4 831,161 - CSW01_18530 0.76 -1.4 831,161 - CSW01_18530 0.76 +1.2 831,161 - CSW01_18530 0.76 -0.1 831,161 - CSW01_18530 0.76 -2.2 831,161 - CSW01_18530 0.76 -0.6 831,161 - CSW01_18530 0.76 -3.8 831,161 - CSW01_18530 0.76 -0.2 831,161 - CSW01_18530 0.76 -0.2 831,161 - CSW01_18530 0.76 -0.7 831,161 - CSW01_18530 0.76 -1.4 831,161 - CSW01_18530 0.76 -0.3 831,161 - CSW01_18530 0.76 -3.5 831,161 - CSW01_18530 0.76 +0.3 831,161 - CSW01_18530 0.76 -1.7 831,161 - CSW01_18530 0.76 -0.1 831,161 - CSW01_18530 0.76 -3.0 831,164 + CSW01_18530 0.77 +0.2 831,170 - CSW01_18530 0.78 +0.2 831,172 - CSW01_18530 0.79 -1.7 831,172 - CSW01_18530 0.79 -0.5 831,183 + CSW01_18530 0.82 -1.2 831,183 + CSW01_18530 0.82 +0.4 831,216 + -2.0 831,310 - -0.5 831,336 - CSW01_18535 0.15 +1.0 831,344 - CSW01_18535 0.17 -0.4 831,386 - CSW01_18535 0.28 +1.3 831,393 + CSW01_18535 0.30 -1.2 831,404 + CSW01_18535 0.32 -0.3 831,404 + CSW01_18535 0.32 -3.0 831,404 + CSW01_18535 0.32 -1.9 831,404 + CSW01_18535 0.32 +0.3 831,408 + CSW01_18535 0.33 +1.0 831,432 + CSW01_18535 0.39 -1.7 831,495 + CSW01_18535 0.55 -1.5 831,537 + CSW01_18535 0.66 +0.8 831,545 - CSW01_18535 0.68 +0.3 831,562 - CSW01_18535 0.72 +0.5 831,562 - CSW01_18535 0.72 -2.8 831,577 - CSW01_18535 0.76 -0.6 831,582 + CSW01_18535 0.77 -0.9 831,582 + CSW01_18535 0.77 -3.6 831,582 + CSW01_18535 0.77 -0.0 831,582 + CSW01_18535 0.77 +1.1 831,582 + CSW01_18535 0.77 -0.2 831,582 + CSW01_18535 0.77 +1.0 831,587 + CSW01_18535 0.79 +0.6 831,590 - CSW01_18535 0.79 -1.6 831,590 - CSW01_18535 0.79 -3.3 831,590 - CSW01_18535 0.79 -1.7 831,590 - CSW01_18535 0.79 -0.8 831,592 + CSW01_18535 0.80 +0.4 831,592 + CSW01_18535 0.80 -1.8 831,592 + CSW01_18535 0.80 +0.9 831,595 + CSW01_18535 0.81 -1.5 831,595 - CSW01_18535 0.81 -2.8 831,597 + CSW01_18535 0.81 -1.4 831,597 + CSW01_18535 0.81 +1.1 831,597 + CSW01_18535 0.81 +0.8 831,597 + CSW01_18535 0.81 +1.6 831,600 - CSW01_18535 0.82 -3.7 831,600 - CSW01_18535 0.82 +1.1 831,600 - CSW01_18535 0.82 -3.0 831,605 - CSW01_18535 0.83 +1.2 831,605 - CSW01_18535 0.83 -2.1 831,606 + CSW01_18535 0.83 +0.2 831,613 - CSW01_18535 0.85 -0.0 831,676 - -2.4 831,680 + +0.6 831,682 - -1.2 831,708 + -2.4 831,716 + -0.6 831,724 - -0.0 831,841 + CSW01_18540 0.15 +0.5 831,842 - CSW01_18540 0.15 -1.7 831,864 + CSW01_18540 0.17 -0.3 831,872 - CSW01_18540 0.18 +0.3 831,940 - CSW01_18540 0.24 +0.4 831,977 - CSW01_18540 0.28 -0.1 831,984 - CSW01_18540 0.28 -0.7 832,107 + CSW01_18540 0.40 +0.7 832,151 + CSW01_18540 0.44 +1.7 832,159 - CSW01_18540 0.45 -2.6 832,177 - CSW01_18540 0.46 +0.4
Or see this region's nucleotide sequence