Experiment: ICP3_phage_0.41_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18340 and CSW01_18345 are separated by 154 nucleotides CSW01_18345 and CSW01_18350 are separated by 892 nucleotides
CSW01_18340: CSW01_18340 - HlyC/CorC family transporter, at 780,008 to 781,321
_18340
CSW01_18345: CSW01_18345 - osmotically inducible protein OsmC, at 781,476 to 781,880
_18345
CSW01_18350: CSW01_18350 - cell division protein DedD, at 782,773 to 783,258
_18350
Position (kb) 781
782 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 780.533 kb on - strand, within CSW01_18340 at 780.543 kb on + strand, within CSW01_18340 at 780.544 kb on - strand, within CSW01_18340 at 780.545 kb on - strand, within CSW01_18340 at 780.551 kb on - strand, within CSW01_18340 at 780.562 kb on + strand, within CSW01_18340 at 780.570 kb on - strand, within CSW01_18340 at 780.645 kb on - strand, within CSW01_18340 at 780.697 kb on - strand, within CSW01_18340 at 780.729 kb on + strand, within CSW01_18340 at 780.729 kb on + strand, within CSW01_18340 at 780.729 kb on + strand, within CSW01_18340 at 780.729 kb on + strand, within CSW01_18340 at 780.729 kb on + strand, within CSW01_18340 at 780.737 kb on - strand, within CSW01_18340 at 780.737 kb on - strand, within CSW01_18340 at 780.737 kb on - strand, within CSW01_18340 at 780.776 kb on + strand, within CSW01_18340 at 780.781 kb on + strand, within CSW01_18340 at 780.781 kb on + strand, within CSW01_18340 at 780.794 kb on - strand, within CSW01_18340 at 780.900 kb on + strand, within CSW01_18340 at 780.994 kb on + strand, within CSW01_18340 at 781.002 kb on - strand, within CSW01_18340 at 781.002 kb on - strand, within CSW01_18340 at 781.006 kb on + strand, within CSW01_18340 at 781.059 kb on + strand, within CSW01_18340 at 781.064 kb on + strand, within CSW01_18340 at 781.064 kb on + strand, within CSW01_18340 at 781.064 kb on + strand, within CSW01_18340 at 781.067 kb on - strand, within CSW01_18340 at 781.067 kb on - strand, within CSW01_18340 at 781.067 kb on - strand, within CSW01_18340 at 781.067 kb on - strand, within CSW01_18340 at 781.072 kb on - strand, within CSW01_18340 at 781.072 kb on - strand, within CSW01_18340 at 781.418 kb on + strand at 781.442 kb on + strand at 781.473 kb on + strand at 781.516 kb on - strand at 781.516 kb on - strand at 781.650 kb on + strand, within CSW01_18345 at 781.667 kb on - strand, within CSW01_18345 at 781.679 kb on - strand, within CSW01_18345 at 781.679 kb on - strand, within CSW01_18345 at 781.689 kb on - strand, within CSW01_18345 at 781.689 kb on - strand, within CSW01_18345 at 781.740 kb on + strand, within CSW01_18345 at 781.740 kb on + strand, within CSW01_18345 at 781.740 kb on + strand, within CSW01_18345 at 781.853 kb on + strand at 782.029 kb on + strand at 782.062 kb on + strand at 782.067 kb on + strand at 782.070 kb on - strand at 782.220 kb on - strand at 782.237 kb on + strand at 782.285 kb on - strand at 782.548 kb on - strand at 782.597 kb on + strand at 782.597 kb on + strand at 782.605 kb on - strand at 782.605 kb on - strand at 782.665 kb on + strand at 782.673 kb on - strand at 782.686 kb on + strand at 782.704 kb on - strand at 782.713 kb on + strand at 782.743 kb on - strand at 782.831 kb on + strand, within CSW01_18350 at 782.858 kb on - strand, within CSW01_18350 at 782.868 kb on - strand, within CSW01_18350
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1 remove 780,533 - CSW01_18340 0.40 -1.7 780,543 + CSW01_18340 0.41 +1.4 780,544 - CSW01_18340 0.41 +0.9 780,545 - CSW01_18340 0.41 +2.2 780,551 - CSW01_18340 0.41 -2.5 780,562 + CSW01_18340 0.42 +1.2 780,570 - CSW01_18340 0.43 -0.3 780,645 - CSW01_18340 0.48 -3.4 780,697 - CSW01_18340 0.52 +1.6 780,729 + CSW01_18340 0.55 +1.1 780,729 + CSW01_18340 0.55 -0.4 780,729 + CSW01_18340 0.55 -2.6 780,729 + CSW01_18340 0.55 -3.2 780,729 + CSW01_18340 0.55 -2.2 780,737 - CSW01_18340 0.55 -2.6 780,737 - CSW01_18340 0.55 +0.3 780,737 - CSW01_18340 0.55 -2.6 780,776 + CSW01_18340 0.58 -1.0 780,781 + CSW01_18340 0.59 +1.2 780,781 + CSW01_18340 0.59 +0.5 780,794 - CSW01_18340 0.60 -2.5 780,900 + CSW01_18340 0.68 -2.0 780,994 + CSW01_18340 0.75 -0.2 781,002 - CSW01_18340 0.76 +2.0 781,002 - CSW01_18340 0.76 -0.0 781,006 + CSW01_18340 0.76 -2.1 781,059 + CSW01_18340 0.80 -2.4 781,064 + CSW01_18340 0.80 +0.3 781,064 + CSW01_18340 0.80 +0.1 781,064 + CSW01_18340 0.80 -0.2 781,067 - CSW01_18340 0.81 -1.2 781,067 - CSW01_18340 0.81 -0.3 781,067 - CSW01_18340 0.81 +0.9 781,067 - CSW01_18340 0.81 +0.6 781,072 - CSW01_18340 0.81 -2.2 781,072 - CSW01_18340 0.81 -3.2 781,418 + +0.7 781,442 + -0.1 781,473 + +0.1 781,516 - -1.4 781,516 - +0.3 781,650 + CSW01_18345 0.43 +1.1 781,667 - CSW01_18345 0.47 -1.3 781,679 - CSW01_18345 0.50 -0.3 781,679 - CSW01_18345 0.50 -0.4 781,689 - CSW01_18345 0.53 +0.4 781,689 - CSW01_18345 0.53 -1.6 781,740 + CSW01_18345 0.65 +2.9 781,740 + CSW01_18345 0.65 -1.3 781,740 + CSW01_18345 0.65 -0.2 781,853 + -0.2 782,029 + +0.1 782,062 + -3.4 782,067 + +0.5 782,070 - -0.6 782,220 - -1.7 782,237 + -2.3 782,285 - +0.6 782,548 - +0.2 782,597 + +0.7 782,597 + +0.4 782,605 - +1.4 782,605 - +0.3 782,665 + +1.3 782,673 - -1.9 782,686 + +0.8 782,704 - +0.1 782,713 + -0.7 782,743 - -2.6 782,831 + CSW01_18350 0.12 -1.9 782,858 - CSW01_18350 0.17 -2.1 782,868 - CSW01_18350 0.20 -2.2
Or see this region's nucleotide sequence