Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17990

Experiment: ICP3_phage_0.41_MOI_rep1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_17980 and CSW01_17985 are separated by 295 nucleotidesCSW01_17985 and CSW01_17990 are separated by 223 nucleotidesCSW01_17990 and CSW01_17995 are separated by 8 nucleotides CSW01_17980: CSW01_17980 - arginine ABC transporter ATP-binding protein ArtP, at 701,942 to 702,670 _17980 CSW01_17985: CSW01_17985 - tRNA-Cys, at 702,966 to 703,039 _17985 CSW01_17990: CSW01_17990 - ATPase RavA stimulator ViaA, at 703,263 to 704,708 _17990 CSW01_17995: CSW01_17995 - DUF3763 domain-containing protein, at 704,717 to 706,375 _17995 Position (kb) 703 704 705Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 702.266 kb on + strand, within CSW01_17980at 702.421 kb on + strand, within CSW01_17980at 702.433 kb on + strand, within CSW01_17980at 702.441 kb on - strand, within CSW01_17980at 702.441 kb on - strand, within CSW01_17980at 702.545 kb on + strand, within CSW01_17980at 702.545 kb on + strand, within CSW01_17980at 702.545 kb on + strand, within CSW01_17980at 702.553 kb on - strand, within CSW01_17980at 702.804 kb on + strandat 702.804 kb on + strandat 703.156 kb on + strandat 703.197 kb on - strandat 703.210 kb on + strandat 703.475 kb on + strand, within CSW01_17990at 703.572 kb on + strand, within CSW01_17990at 703.620 kb on - strand, within CSW01_17990at 703.620 kb on - strand, within CSW01_17990at 703.802 kb on + strand, within CSW01_17990at 703.961 kb on - strand, within CSW01_17990at 704.065 kb on - strand, within CSW01_17990at 704.117 kb on - strand, within CSW01_17990at 704.316 kb on - strand, within CSW01_17990at 704.387 kb on + strand, within CSW01_17990at 704.397 kb on - strand, within CSW01_17990at 704.414 kb on - strand, within CSW01_17990at 704.494 kb on - strand, within CSW01_17990at 704.494 kb on - strand, within CSW01_17990at 704.512 kb on + strand, within CSW01_17990at 704.520 kb on - strand, within CSW01_17990at 704.528 kb on - strand, within CSW01_17990at 704.586 kb on - strandat 704.586 kb on - strandat 704.612 kb on + strandat 704.915 kb on - strand, within CSW01_17995at 704.915 kb on - strand, within CSW01_17995at 704.932 kb on - strand, within CSW01_17995at 704.973 kb on - strand, within CSW01_17995at 705.092 kb on + strand, within CSW01_17995at 705.092 kb on + strand, within CSW01_17995at 705.092 kb on + strand, within CSW01_17995at 705.092 kb on + strand, within CSW01_17995at 705.092 kb on + strand, within CSW01_17995at 705.092 kb on + strand, within CSW01_17995at 705.092 kb on + strand, within CSW01_17995at 705.092 kb on + strand, within CSW01_17995at 705.100 kb on - strand, within CSW01_17995at 705.100 kb on - strand, within CSW01_17995at 705.100 kb on - strand, within CSW01_17995at 705.100 kb on - strand, within CSW01_17995at 705.100 kb on - strand, within CSW01_17995at 705.100 kb on - strand, within CSW01_17995at 705.170 kb on + strand, within CSW01_17995at 705.339 kb on + strand, within CSW01_17995at 705.349 kb on - strand, within CSW01_17995at 705.375 kb on - strand, within CSW01_17995at 705.409 kb on + strand, within CSW01_17995at 705.417 kb on + strand, within CSW01_17995at 705.417 kb on + strand, within CSW01_17995at 705.425 kb on - strand, within CSW01_17995at 705.435 kb on - strand, within CSW01_17995at 705.474 kb on - strand, within CSW01_17995at 705.474 kb on - strand, within CSW01_17995at 705.488 kb on + strand, within CSW01_17995at 705.622 kb on + strand, within CSW01_17995at 705.653 kb on - strand, within CSW01_17995at 705.685 kb on + strand, within CSW01_17995at 705.693 kb on - strand, within CSW01_17995

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1
remove
702,266 + CSW01_17980 0.44 +0.1
702,421 + CSW01_17980 0.66 -2.1
702,433 + CSW01_17980 0.67 -0.2
702,441 - CSW01_17980 0.68 +0.3
702,441 - CSW01_17980 0.68 -1.1
702,545 + CSW01_17980 0.83 -0.0
702,545 + CSW01_17980 0.83 -1.3
702,545 + CSW01_17980 0.83 -0.6
702,553 - CSW01_17980 0.84 -0.2
702,804 + +1.4
702,804 + +1.8
703,156 + +0.7
703,197 - -2.7
703,210 + -1.4
703,475 + CSW01_17990 0.15 -0.0
703,572 + CSW01_17990 0.21 +1.2
703,620 - CSW01_17990 0.25 -1.6
703,620 - CSW01_17990 0.25 -0.9
703,802 + CSW01_17990 0.37 +0.8
703,961 - CSW01_17990 0.48 +2.4
704,065 - CSW01_17990 0.55 +0.1
704,117 - CSW01_17990 0.59 -0.0
704,316 - CSW01_17990 0.73 -0.3
704,387 + CSW01_17990 0.78 -2.5
704,397 - CSW01_17990 0.78 -0.0
704,414 - CSW01_17990 0.80 -1.4
704,494 - CSW01_17990 0.85 +0.4
704,494 - CSW01_17990 0.85 +0.1
704,512 + CSW01_17990 0.86 -1.1
704,520 - CSW01_17990 0.87 +0.4
704,528 - CSW01_17990 0.87 +1.6
704,586 - -1.8
704,586 - -0.4
704,612 + -0.7
704,915 - CSW01_17995 0.12 -2.2
704,915 - CSW01_17995 0.12 -0.2
704,932 - CSW01_17995 0.13 +1.0
704,973 - CSW01_17995 0.15 -0.5
705,092 + CSW01_17995 0.23 +0.4
705,092 + CSW01_17995 0.23 +1.1
705,092 + CSW01_17995 0.23 -0.4
705,092 + CSW01_17995 0.23 -0.2
705,092 + CSW01_17995 0.23 +0.7
705,092 + CSW01_17995 0.23 +0.4
705,092 + CSW01_17995 0.23 -1.8
705,092 + CSW01_17995 0.23 -0.5
705,100 - CSW01_17995 0.23 +1.2
705,100 - CSW01_17995 0.23 +1.0
705,100 - CSW01_17995 0.23 +0.4
705,100 - CSW01_17995 0.23 +1.4
705,100 - CSW01_17995 0.23 -2.9
705,100 - CSW01_17995 0.23 +1.3
705,170 + CSW01_17995 0.27 -0.5
705,339 + CSW01_17995 0.37 -1.8
705,349 - CSW01_17995 0.38 +0.8
705,375 - CSW01_17995 0.40 -3.0
705,409 + CSW01_17995 0.42 -1.1
705,417 + CSW01_17995 0.42 -1.3
705,417 + CSW01_17995 0.42 -0.5
705,425 - CSW01_17995 0.43 -1.7
705,435 - CSW01_17995 0.43 +0.6
705,474 - CSW01_17995 0.46 -1.7
705,474 - CSW01_17995 0.46 +1.3
705,488 + CSW01_17995 0.46 +0.9
705,622 + CSW01_17995 0.55 -0.6
705,653 - CSW01_17995 0.56 -0.1
705,685 + CSW01_17995 0.58 -2.4
705,693 - CSW01_17995 0.59 -0.3

Or see this region's nucleotide sequence