Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17965

Experiment: ICP3_phage_0.41_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17960 and CSW01_17965 are separated by 52 nucleotidesCSW01_17965 and CSW01_17970 overlap by 4 nucleotidesCSW01_17970 and CSW01_17975 are separated by 1 nucleotides CSW01_17960: CSW01_17960 - LysR family transcriptional regulator, at 698,823 to 699,728 _17960 CSW01_17965: CSW01_17965 - arginine transporter permease subunit ArtM, at 699,781 to 700,449 _17965 CSW01_17970: CSW01_17970 - ABC transporter, at 700,446 to 701,135 _17970 CSW01_17975: CSW01_17975 - arginine ABC transporter substrate-binding protein, at 701,137 to 701,868 _17975 Position (kb) 699 700 701Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 698.839 kb on + strandat 698.869 kb on - strandat 699.084 kb on - strand, within CSW01_17960at 699.100 kb on + strand, within CSW01_17960at 699.112 kb on + strand, within CSW01_17960at 699.120 kb on - strand, within CSW01_17960at 699.169 kb on + strand, within CSW01_17960at 699.169 kb on + strand, within CSW01_17960at 699.169 kb on + strand, within CSW01_17960at 699.170 kb on + strand, within CSW01_17960at 699.177 kb on - strand, within CSW01_17960at 699.177 kb on - strand, within CSW01_17960at 699.177 kb on - strand, within CSW01_17960at 699.184 kb on - strand, within CSW01_17960at 699.259 kb on + strand, within CSW01_17960at 699.302 kb on - strand, within CSW01_17960at 699.324 kb on - strand, within CSW01_17960at 699.324 kb on - strand, within CSW01_17960at 699.376 kb on + strand, within CSW01_17960at 699.395 kb on + strand, within CSW01_17960at 699.403 kb on - strand, within CSW01_17960at 699.464 kb on - strand, within CSW01_17960at 699.464 kb on - strand, within CSW01_17960at 699.531 kb on + strand, within CSW01_17960at 699.531 kb on + strand, within CSW01_17960at 699.532 kb on + strand, within CSW01_17960at 699.539 kb on - strand, within CSW01_17960at 699.540 kb on - strand, within CSW01_17960at 699.559 kb on - strand, within CSW01_17960at 699.640 kb on - strandat 699.705 kb on + strandat 699.768 kb on - strandat 699.779 kb on + strandat 699.882 kb on - strand, within CSW01_17965at 699.963 kb on - strand, within CSW01_17965at 699.963 kb on - strand, within CSW01_17965at 699.963 kb on - strand, within CSW01_17965at 699.968 kb on - strand, within CSW01_17965at 700.005 kb on + strand, within CSW01_17965at 700.022 kb on + strand, within CSW01_17965at 700.035 kb on - strand, within CSW01_17965at 700.115 kb on + strand, within CSW01_17965at 700.123 kb on - strand, within CSW01_17965at 700.148 kb on - strand, within CSW01_17965at 700.220 kb on + strand, within CSW01_17965at 700.228 kb on - strand, within CSW01_17965at 700.230 kb on + strand, within CSW01_17965at 700.230 kb on + strand, within CSW01_17965at 700.230 kb on + strand, within CSW01_17965at 700.230 kb on + strand, within CSW01_17965at 700.238 kb on - strand, within CSW01_17965at 700.238 kb on - strand, within CSW01_17965at 700.238 kb on - strand, within CSW01_17965at 700.288 kb on + strand, within CSW01_17965at 700.296 kb on - strand, within CSW01_17965at 700.301 kb on + strand, within CSW01_17965at 700.302 kb on + strand, within CSW01_17965at 700.332 kb on + strand, within CSW01_17965at 700.339 kb on + strand, within CSW01_17965at 700.339 kb on + strand, within CSW01_17965at 700.339 kb on + strand, within CSW01_17965at 700.348 kb on + strand, within CSW01_17965at 700.354 kb on - strand, within CSW01_17965at 700.403 kb on - strandat 700.455 kb on + strandat 700.553 kb on - strand, within CSW01_17970at 700.575 kb on + strand, within CSW01_17970at 700.597 kb on - strand, within CSW01_17970at 700.602 kb on - strand, within CSW01_17970at 700.686 kb on + strand, within CSW01_17970at 700.694 kb on + strand, within CSW01_17970at 700.708 kb on + strand, within CSW01_17970at 700.713 kb on + strand, within CSW01_17970at 700.768 kb on + strand, within CSW01_17970at 700.778 kb on + strand, within CSW01_17970at 700.778 kb on + strand, within CSW01_17970at 700.786 kb on - strand, within CSW01_17970at 700.786 kb on - strand, within CSW01_17970at 700.800 kb on - strand, within CSW01_17970at 700.812 kb on + strand, within CSW01_17970at 700.922 kb on - strand, within CSW01_17970at 701.106 kb on - strandat 701.108 kb on + strandat 701.118 kb on - strandat 701.124 kb on - strandat 701.200 kb on - strandat 701.204 kb on + strandat 701.204 kb on + strandat 701.204 kb on + strandat 701.204 kb on + strandat 701.212 kb on - strand, within CSW01_17975at 701.221 kb on - strand, within CSW01_17975at 701.316 kb on - strand, within CSW01_17975at 701.318 kb on + strand, within CSW01_17975at 701.319 kb on + strand, within CSW01_17975at 701.326 kb on - strand, within CSW01_17975at 701.418 kb on - strand, within CSW01_17975

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1
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698,839 + +1.3
698,869 - +1.9
699,084 - CSW01_17960 0.29 +0.6
699,100 + CSW01_17960 0.31 +0.7
699,112 + CSW01_17960 0.32 +0.1
699,120 - CSW01_17960 0.33 -1.4
699,169 + CSW01_17960 0.38 +0.2
699,169 + CSW01_17960 0.38 -3.0
699,169 + CSW01_17960 0.38 -0.2
699,170 + CSW01_17960 0.38 -1.3
699,177 - CSW01_17960 0.39 -0.2
699,177 - CSW01_17960 0.39 +0.8
699,177 - CSW01_17960 0.39 -1.1
699,184 - CSW01_17960 0.40 -0.9
699,259 + CSW01_17960 0.48 -0.7
699,302 - CSW01_17960 0.53 -1.7
699,324 - CSW01_17960 0.55 +0.3
699,324 - CSW01_17960 0.55 -1.0
699,376 + CSW01_17960 0.61 +2.3
699,395 + CSW01_17960 0.63 -2.4
699,403 - CSW01_17960 0.64 -0.0
699,464 - CSW01_17960 0.71 -0.7
699,464 - CSW01_17960 0.71 -0.1
699,531 + CSW01_17960 0.78 -2.9
699,531 + CSW01_17960 0.78 -0.4
699,532 + CSW01_17960 0.78 +0.2
699,539 - CSW01_17960 0.79 +0.1
699,540 - CSW01_17960 0.79 +0.3
699,559 - CSW01_17960 0.81 -0.1
699,640 - -3.0
699,705 + -1.1
699,768 - +0.9
699,779 + -0.9
699,882 - CSW01_17965 0.15 +0.7
699,963 - CSW01_17965 0.27 +1.6
699,963 - CSW01_17965 0.27 -0.8
699,963 - CSW01_17965 0.27 -1.1
699,968 - CSW01_17965 0.28 -1.8
700,005 + CSW01_17965 0.33 -0.3
700,022 + CSW01_17965 0.36 +0.8
700,035 - CSW01_17965 0.38 +0.0
700,115 + CSW01_17965 0.50 -1.3
700,123 - CSW01_17965 0.51 +1.0
700,148 - CSW01_17965 0.55 +0.8
700,220 + CSW01_17965 0.66 -1.0
700,228 - CSW01_17965 0.67 +0.6
700,230 + CSW01_17965 0.67 -3.4
700,230 + CSW01_17965 0.67 +0.1
700,230 + CSW01_17965 0.67 -1.4
700,230 + CSW01_17965 0.67 -0.4
700,238 - CSW01_17965 0.68 -2.1
700,238 - CSW01_17965 0.68 -2.8
700,238 - CSW01_17965 0.68 -3.1
700,288 + CSW01_17965 0.76 -1.8
700,296 - CSW01_17965 0.77 -0.1
700,301 + CSW01_17965 0.78 -0.9
700,302 + CSW01_17965 0.78 -1.4
700,332 + CSW01_17965 0.82 +1.4
700,339 + CSW01_17965 0.83 +0.6
700,339 + CSW01_17965 0.83 -3.1
700,339 + CSW01_17965 0.83 +1.9
700,348 + CSW01_17965 0.85 +0.8
700,354 - CSW01_17965 0.86 -0.9
700,403 - +0.6
700,455 + +0.4
700,553 - CSW01_17970 0.16 +2.3
700,575 + CSW01_17970 0.19 -1.8
700,597 - CSW01_17970 0.22 -2.6
700,602 - CSW01_17970 0.23 +0.7
700,686 + CSW01_17970 0.35 -2.2
700,694 + CSW01_17970 0.36 -0.3
700,708 + CSW01_17970 0.38 +0.9
700,713 + CSW01_17970 0.39 -2.8
700,768 + CSW01_17970 0.47 +0.7
700,778 + CSW01_17970 0.48 -1.4
700,778 + CSW01_17970 0.48 +0.2
700,786 - CSW01_17970 0.49 -2.9
700,786 - CSW01_17970 0.49 -1.8
700,800 - CSW01_17970 0.51 -2.9
700,812 + CSW01_17970 0.53 +0.9
700,922 - CSW01_17970 0.69 -0.7
701,106 - -1.4
701,108 + +1.7
701,118 - +1.4
701,124 - +0.5
701,200 - -1.2
701,204 + -3.1
701,204 + -1.9
701,204 + +0.0
701,204 + -0.1
701,212 - CSW01_17975 0.10 +0.6
701,221 - CSW01_17975 0.11 -1.3
701,316 - CSW01_17975 0.24 +0.6
701,318 + CSW01_17975 0.25 +0.3
701,319 + CSW01_17975 0.25 -0.8
701,326 - CSW01_17975 0.26 -0.4
701,418 - CSW01_17975 0.38 +1.9

Or see this region's nucleotide sequence