Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17685

Experiment: ICP3_phage_0.41_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17680 and CSW01_17685 are separated by 265 nucleotidesCSW01_17685 and CSW01_17690 are separated by 671 nucleotides CSW01_17680: CSW01_17680 - glucose-1-phosphate adenylyltransferase, at 635,522 to 636,745 _17680 CSW01_17685: CSW01_17685 - chitinase, at 637,011 to 640,166 _17685 CSW01_17690: CSW01_17690 - NADH-dependent alcohol dehydrogenase, at 640,838 to 641,986 _17690 Position (kb) 637 638 639 640 641Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 636.055 kb on - strand, within CSW01_17680at 636.254 kb on + strand, within CSW01_17680at 636.254 kb on + strand, within CSW01_17680at 636.254 kb on + strand, within CSW01_17680at 636.254 kb on + strand, within CSW01_17680at 636.262 kb on - strand, within CSW01_17680at 636.262 kb on - strand, within CSW01_17680at 636.262 kb on - strand, within CSW01_17680at 636.262 kb on - strand, within CSW01_17680at 636.262 kb on - strand, within CSW01_17680at 636.262 kb on - strand, within CSW01_17680at 636.282 kb on - strand, within CSW01_17680at 636.387 kb on + strand, within CSW01_17680at 636.387 kb on + strand, within CSW01_17680at 636.387 kb on + strand, within CSW01_17680at 636.408 kb on - strand, within CSW01_17680at 636.492 kb on + strand, within CSW01_17680at 636.537 kb on + strand, within CSW01_17680at 636.555 kb on - strand, within CSW01_17680at 636.566 kb on - strand, within CSW01_17680at 636.581 kb on - strand, within CSW01_17680at 636.592 kb on + strand, within CSW01_17680at 636.592 kb on + strand, within CSW01_17680at 636.592 kb on - strand, within CSW01_17680at 636.592 kb on - strand, within CSW01_17680at 636.597 kb on + strand, within CSW01_17680at 636.598 kb on - strand, within CSW01_17680at 636.599 kb on - strand, within CSW01_17680at 636.710 kb on - strandat 636.730 kb on + strandat 636.730 kb on + strandat 636.888 kb on + strandat 636.888 kb on + strandat 636.913 kb on - strandat 636.945 kb on - strandat 637.008 kb on - strandat 637.014 kb on + strandat 637.053 kb on - strandat 637.186 kb on + strandat 637.195 kb on + strandat 637.257 kb on - strandat 637.262 kb on - strandat 637.268 kb on + strandat 637.317 kb on - strandat 637.317 kb on - strandat 637.338 kb on + strand, within CSW01_17685at 637.423 kb on - strand, within CSW01_17685at 637.452 kb on + strand, within CSW01_17685at 637.452 kb on + strand, within CSW01_17685at 637.452 kb on + strand, within CSW01_17685at 637.460 kb on - strand, within CSW01_17685at 637.460 kb on - strand, within CSW01_17685at 637.460 kb on - strand, within CSW01_17685at 637.480 kb on - strand, within CSW01_17685at 637.506 kb on + strand, within CSW01_17685at 637.628 kb on + strand, within CSW01_17685at 637.726 kb on + strand, within CSW01_17685at 637.738 kb on + strand, within CSW01_17685at 637.760 kb on - strand, within CSW01_17685at 637.767 kb on - strand, within CSW01_17685at 637.784 kb on - strand, within CSW01_17685at 637.793 kb on + strand, within CSW01_17685at 637.916 kb on + strand, within CSW01_17685at 638.005 kb on - strand, within CSW01_17685at 638.027 kb on - strand, within CSW01_17685at 638.095 kb on + strand, within CSW01_17685at 638.095 kb on + strand, within CSW01_17685at 638.103 kb on - strand, within CSW01_17685at 638.216 kb on + strand, within CSW01_17685at 638.241 kb on + strand, within CSW01_17685at 638.247 kb on + strand, within CSW01_17685at 638.260 kb on + strand, within CSW01_17685at 638.353 kb on - strand, within CSW01_17685at 638.353 kb on - strand, within CSW01_17685at 638.382 kb on + strand, within CSW01_17685at 638.382 kb on + strand, within CSW01_17685at 638.382 kb on + strand, within CSW01_17685at 638.382 kb on + strand, within CSW01_17685at 638.387 kb on + strand, within CSW01_17685at 638.390 kb on - strand, within CSW01_17685at 638.390 kb on - strand, within CSW01_17685at 638.390 kb on - strand, within CSW01_17685at 638.395 kb on - strand, within CSW01_17685at 638.424 kb on + strand, within CSW01_17685at 638.424 kb on + strand, within CSW01_17685at 638.432 kb on - strand, within CSW01_17685at 638.432 kb on - strand, within CSW01_17685at 638.451 kb on + strand, within CSW01_17685at 638.451 kb on + strand, within CSW01_17685at 638.451 kb on + strand, within CSW01_17685at 638.459 kb on - strand, within CSW01_17685at 638.502 kb on - strand, within CSW01_17685at 638.643 kb on + strand, within CSW01_17685at 638.738 kb on - strand, within CSW01_17685at 639.004 kb on + strand, within CSW01_17685at 639.035 kb on - strand, within CSW01_17685at 639.109 kb on + strand, within CSW01_17685at 639.141 kb on + strand, within CSW01_17685at 639.143 kb on - strand, within CSW01_17685at 639.280 kb on - strand, within CSW01_17685at 639.280 kb on - strand, within CSW01_17685at 639.361 kb on - strand, within CSW01_17685at 639.362 kb on - strand, within CSW01_17685at 639.435 kb on - strand, within CSW01_17685at 639.447 kb on - strand, within CSW01_17685at 639.500 kb on + strand, within CSW01_17685at 639.505 kb on - strand, within CSW01_17685at 639.536 kb on + strand, within CSW01_17685at 639.545 kb on - strand, within CSW01_17685at 639.623 kb on + strand, within CSW01_17685at 639.650 kb on + strand, within CSW01_17685at 639.697 kb on + strand, within CSW01_17685at 639.723 kb on + strand, within CSW01_17685at 639.731 kb on - strand, within CSW01_17685at 639.800 kb on - strand, within CSW01_17685at 639.820 kb on + strand, within CSW01_17685at 639.820 kb on + strand, within CSW01_17685at 639.828 kb on - strand, within CSW01_17685at 639.835 kb on + strand, within CSW01_17685at 639.835 kb on + strand, within CSW01_17685at 639.843 kb on - strand, within CSW01_17685at 639.858 kb on - strandat 639.873 kb on - strandat 639.876 kb on + strandat 639.994 kb on + strandat 640.000 kb on + strandat 640.005 kb on + strandat 640.005 kb on + strandat 640.032 kb on - strandat 640.032 kb on - strandat 640.122 kb on - strandat 640.555 kb on + strandat 640.759 kb on - strandat 640.937 kb on - strandat 640.947 kb on - strandat 640.998 kb on + strand, within CSW01_17690at 641.056 kb on + strand, within CSW01_17690at 641.059 kb on - strand, within CSW01_17690at 641.063 kb on + strand, within CSW01_17690at 641.064 kb on - strand, within CSW01_17690at 641.123 kb on + strand, within CSW01_17690at 641.141 kb on - strand, within CSW01_17690

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1
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636,055 - CSW01_17680 0.44 +1.1
636,254 + CSW01_17680 0.60 -0.1
636,254 + CSW01_17680 0.60 -0.1
636,254 + CSW01_17680 0.60 +0.4
636,254 + CSW01_17680 0.60 -0.0
636,262 - CSW01_17680 0.60 -0.5
636,262 - CSW01_17680 0.60 +1.8
636,262 - CSW01_17680 0.60 -0.5
636,262 - CSW01_17680 0.60 -0.3
636,262 - CSW01_17680 0.60 +0.4
636,262 - CSW01_17680 0.60 +0.2
636,282 - CSW01_17680 0.62 +0.8
636,387 + CSW01_17680 0.71 -2.6
636,387 + CSW01_17680 0.71 +1.4
636,387 + CSW01_17680 0.71 +2.0
636,408 - CSW01_17680 0.72 -0.7
636,492 + CSW01_17680 0.79 -0.4
636,537 + CSW01_17680 0.83 -2.3
636,555 - CSW01_17680 0.84 -0.1
636,566 - CSW01_17680 0.85 +0.2
636,581 - CSW01_17680 0.87 +1.5
636,592 + CSW01_17680 0.87 +0.5
636,592 + CSW01_17680 0.87 +1.0
636,592 - CSW01_17680 0.87 -1.1
636,592 - CSW01_17680 0.87 +1.2
636,597 + CSW01_17680 0.88 +1.4
636,598 - CSW01_17680 0.88 +0.1
636,599 - CSW01_17680 0.88 -1.0
636,710 - -1.7
636,730 + -1.3
636,730 + +1.2
636,888 + -0.3
636,888 + -0.0
636,913 - +1.4
636,945 - -0.4
637,008 - -1.8
637,014 + -0.4
637,053 - +0.6
637,186 + -0.1
637,195 + -1.4
637,257 - +1.7
637,262 - -0.9
637,268 + +1.6
637,317 - -1.0
637,317 - -0.1
637,338 + CSW01_17685 0.10 -0.3
637,423 - CSW01_17685 0.13 -0.4
637,452 + CSW01_17685 0.14 -1.9
637,452 + CSW01_17685 0.14 +0.1
637,452 + CSW01_17685 0.14 -0.5
637,460 - CSW01_17685 0.14 +0.5
637,460 - CSW01_17685 0.14 -2.9
637,460 - CSW01_17685 0.14 +0.8
637,480 - CSW01_17685 0.15 -0.2
637,506 + CSW01_17685 0.16 -0.2
637,628 + CSW01_17685 0.20 -2.0
637,726 + CSW01_17685 0.23 +0.3
637,738 + CSW01_17685 0.23 -0.3
637,760 - CSW01_17685 0.24 -2.3
637,767 - CSW01_17685 0.24 -0.1
637,784 - CSW01_17685 0.24 +0.9
637,793 + CSW01_17685 0.25 -2.6
637,916 + CSW01_17685 0.29 +0.6
638,005 - CSW01_17685 0.31 -0.9
638,027 - CSW01_17685 0.32 +0.2
638,095 + CSW01_17685 0.34 -1.3
638,095 + CSW01_17685 0.34 -2.8
638,103 - CSW01_17685 0.35 +0.2
638,216 + CSW01_17685 0.38 +0.8
638,241 + CSW01_17685 0.39 +0.6
638,247 + CSW01_17685 0.39 +1.2
638,260 + CSW01_17685 0.40 -0.1
638,353 - CSW01_17685 0.43 +0.7
638,353 - CSW01_17685 0.43 +1.5
638,382 + CSW01_17685 0.43 +0.3
638,382 + CSW01_17685 0.43 -3.1
638,382 + CSW01_17685 0.43 +0.9
638,382 + CSW01_17685 0.43 -1.3
638,387 + CSW01_17685 0.44 -0.4
638,390 - CSW01_17685 0.44 +1.9
638,390 - CSW01_17685 0.44 -1.8
638,390 - CSW01_17685 0.44 -0.6
638,395 - CSW01_17685 0.44 -0.9
638,424 + CSW01_17685 0.45 +0.5
638,424 + CSW01_17685 0.45 -0.6
638,432 - CSW01_17685 0.45 +0.7
638,432 - CSW01_17685 0.45 +0.5
638,451 + CSW01_17685 0.46 +0.4
638,451 + CSW01_17685 0.46 +1.2
638,451 + CSW01_17685 0.46 +1.1
638,459 - CSW01_17685 0.46 +0.4
638,502 - CSW01_17685 0.47 +1.2
638,643 + CSW01_17685 0.52 +0.5
638,738 - CSW01_17685 0.55 -2.9
639,004 + CSW01_17685 0.63 -2.2
639,035 - CSW01_17685 0.64 -2.6
639,109 + CSW01_17685 0.66 +1.0
639,141 + CSW01_17685 0.67 -0.9
639,143 - CSW01_17685 0.68 +1.4
639,280 - CSW01_17685 0.72 +1.8
639,280 - CSW01_17685 0.72 +2.3
639,361 - CSW01_17685 0.74 -2.5
639,362 - CSW01_17685 0.74 -0.5
639,435 - CSW01_17685 0.77 -2.5
639,447 - CSW01_17685 0.77 +1.6
639,500 + CSW01_17685 0.79 +1.0
639,505 - CSW01_17685 0.79 +2.3
639,536 + CSW01_17685 0.80 -2.4
639,545 - CSW01_17685 0.80 -1.0
639,623 + CSW01_17685 0.83 -1.2
639,650 + CSW01_17685 0.84 +0.2
639,697 + CSW01_17685 0.85 +0.0
639,723 + CSW01_17685 0.86 +0.3
639,731 - CSW01_17685 0.86 -0.2
639,800 - CSW01_17685 0.88 -1.2
639,820 + CSW01_17685 0.89 -2.8
639,820 + CSW01_17685 0.89 +0.7
639,828 - CSW01_17685 0.89 +0.9
639,835 + CSW01_17685 0.89 -0.3
639,835 + CSW01_17685 0.89 +0.6
639,843 - CSW01_17685 0.90 -0.1
639,858 - +0.8
639,873 - +0.6
639,876 + -0.2
639,994 + +2.3
640,000 + -0.7
640,005 + -1.9
640,005 + +1.0
640,032 - -0.3
640,032 - -1.1
640,122 - -0.7
640,555 + +0.6
640,759 - -0.0
640,937 - +1.3
640,947 - +0.4
640,998 + CSW01_17690 0.14 -0.1
641,056 + CSW01_17690 0.19 +0.4
641,059 - CSW01_17690 0.19 -2.1
641,063 + CSW01_17690 0.20 -1.1
641,064 - CSW01_17690 0.20 -0.0
641,123 + CSW01_17690 0.25 +0.5
641,141 - CSW01_17690 0.26 -0.4

Or see this region's nucleotide sequence