Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17675

Experiment: ICP3_phage_0.41_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17670 and CSW01_17675 are separated by 357 nucleotidesCSW01_17675 and CSW01_17680 are separated by 302 nucleotides CSW01_17670: CSW01_17670 - hypothetical protein, at 632,262 to 632,933 _17670 CSW01_17675: CSW01_17675 - GGDEF domain-containing protein, at 633,291 to 635,219 _17675 CSW01_17680: CSW01_17680 - glucose-1-phosphate adenylyltransferase, at 635,522 to 636,745 _17680 Position (kb) 633 634 635 636Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 632.309 kb on - strandat 632.309 kb on - strandat 632.324 kb on - strandat 632.324 kb on - strandat 632.324 kb on - strandat 632.333 kb on + strand, within CSW01_17670at 632.354 kb on + strand, within CSW01_17670at 632.354 kb on + strand, within CSW01_17670at 632.568 kb on - strand, within CSW01_17670at 632.568 kb on - strand, within CSW01_17670at 632.717 kb on + strand, within CSW01_17670at 632.796 kb on - strand, within CSW01_17670at 632.823 kb on + strand, within CSW01_17670at 632.844 kb on + strand, within CSW01_17670at 633.298 kb on + strandat 633.298 kb on + strandat 633.342 kb on + strandat 633.344 kb on - strandat 633.351 kb on - strandat 633.408 kb on - strandat 633.434 kb on + strandat 633.460 kb on - strandat 633.488 kb on + strand, within CSW01_17675at 633.528 kb on + strand, within CSW01_17675at 633.573 kb on + strand, within CSW01_17675at 633.574 kb on - strand, within CSW01_17675at 633.581 kb on - strand, within CSW01_17675at 633.605 kb on - strand, within CSW01_17675at 633.608 kb on + strand, within CSW01_17675at 633.616 kb on - strand, within CSW01_17675at 633.624 kb on + strand, within CSW01_17675at 633.745 kb on + strand, within CSW01_17675at 633.753 kb on - strand, within CSW01_17675at 633.796 kb on - strand, within CSW01_17675at 633.852 kb on - strand, within CSW01_17675at 633.899 kb on - strand, within CSW01_17675at 634.000 kb on + strand, within CSW01_17675at 634.046 kb on - strand, within CSW01_17675at 634.065 kb on + strand, within CSW01_17675at 634.080 kb on - strand, within CSW01_17675at 634.111 kb on + strand, within CSW01_17675at 634.119 kb on - strand, within CSW01_17675at 634.162 kb on + strand, within CSW01_17675at 634.186 kb on - strand, within CSW01_17675at 634.232 kb on - strand, within CSW01_17675at 634.232 kb on - strand, within CSW01_17675at 634.232 kb on - strand, within CSW01_17675at 634.251 kb on + strand, within CSW01_17675at 634.277 kb on - strand, within CSW01_17675at 634.277 kb on - strand, within CSW01_17675at 634.376 kb on - strand, within CSW01_17675at 634.452 kb on - strand, within CSW01_17675at 634.467 kb on - strand, within CSW01_17675at 634.469 kb on + strand, within CSW01_17675at 634.535 kb on + strand, within CSW01_17675at 634.545 kb on + strand, within CSW01_17675at 634.553 kb on - strand, within CSW01_17675at 634.839 kb on + strand, within CSW01_17675at 634.894 kb on - strand, within CSW01_17675at 635.025 kb on + strand, within CSW01_17675at 635.136 kb on + strandat 635.267 kb on - strandat 635.287 kb on + strandat 635.287 kb on + strandat 635.295 kb on - strandat 635.311 kb on - strandat 635.312 kb on - strandat 635.328 kb on + strandat 635.336 kb on - strandat 635.341 kb on - strandat 635.341 kb on - strandat 635.498 kb on - strandat 635.517 kb on + strandat 635.525 kb on - strandat 635.756 kb on - strand, within CSW01_17680at 635.849 kb on - strand, within CSW01_17680at 635.961 kb on + strand, within CSW01_17680at 636.055 kb on - strand, within CSW01_17680

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1
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632,309 - +0.9
632,309 - +0.9
632,324 - +0.7
632,324 - +0.7
632,324 - +0.7
632,333 + CSW01_17670 0.11 +0.3
632,354 + CSW01_17670 0.14 +0.8
632,354 + CSW01_17670 0.14 -1.3
632,568 - CSW01_17670 0.46 -3.5
632,568 - CSW01_17670 0.46 +0.1
632,717 + CSW01_17670 0.68 -0.4
632,796 - CSW01_17670 0.79 +0.2
632,823 + CSW01_17670 0.83 +2.6
632,844 + CSW01_17670 0.87 +0.6
633,298 + +0.4
633,298 + -2.4
633,342 + -0.3
633,344 - -1.7
633,351 - -0.1
633,408 - +0.3
633,434 + -1.0
633,460 - +1.4
633,488 + CSW01_17675 0.10 +0.2
633,528 + CSW01_17675 0.12 +1.1
633,573 + CSW01_17675 0.15 -0.1
633,574 - CSW01_17675 0.15 -3.1
633,581 - CSW01_17675 0.15 +0.2
633,605 - CSW01_17675 0.16 +0.8
633,608 + CSW01_17675 0.16 +0.9
633,616 - CSW01_17675 0.17 +0.7
633,624 + CSW01_17675 0.17 +0.4
633,745 + CSW01_17675 0.24 +0.1
633,753 - CSW01_17675 0.24 -0.7
633,796 - CSW01_17675 0.26 -0.9
633,852 - CSW01_17675 0.29 +0.2
633,899 - CSW01_17675 0.32 -1.6
634,000 + CSW01_17675 0.37 +3.5
634,046 - CSW01_17675 0.39 +0.4
634,065 + CSW01_17675 0.40 +0.7
634,080 - CSW01_17675 0.41 -0.4
634,111 + CSW01_17675 0.43 -0.5
634,119 - CSW01_17675 0.43 -3.1
634,162 + CSW01_17675 0.45 +0.9
634,186 - CSW01_17675 0.46 -2.1
634,232 - CSW01_17675 0.49 -2.2
634,232 - CSW01_17675 0.49 -2.7
634,232 - CSW01_17675 0.49 -0.3
634,251 + CSW01_17675 0.50 -0.2
634,277 - CSW01_17675 0.51 -0.2
634,277 - CSW01_17675 0.51 -0.4
634,376 - CSW01_17675 0.56 +0.4
634,452 - CSW01_17675 0.60 +0.8
634,467 - CSW01_17675 0.61 -0.4
634,469 + CSW01_17675 0.61 -0.9
634,535 + CSW01_17675 0.64 +0.3
634,545 + CSW01_17675 0.65 +1.2
634,553 - CSW01_17675 0.65 -0.4
634,839 + CSW01_17675 0.80 -1.6
634,894 - CSW01_17675 0.83 -1.3
635,025 + CSW01_17675 0.90 -2.3
635,136 + -1.6
635,267 - -0.2
635,287 + -1.3
635,287 + -0.5
635,295 - -1.6
635,311 - -0.4
635,312 - +1.5
635,328 + -0.7
635,336 - -1.7
635,341 - +1.7
635,341 - -1.4
635,498 - +1.6
635,517 + +1.9
635,525 - +1.3
635,756 - CSW01_17680 0.19 +1.9
635,849 - CSW01_17680 0.27 +0.5
635,961 + CSW01_17680 0.36 +0.3
636,055 - CSW01_17680 0.44 +1.1

Or see this region's nucleotide sequence