Experiment: ICP3_phage_0.41_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17270 and CSW01_17275 are separated by 270 nucleotides CSW01_17275 and CSW01_17280 are separated by 230 nucleotides CSW01_17280 and CSW01_17285 are separated by 127 nucleotides
CSW01_17270: CSW01_17270 - isoprenoid biosynthesis protein ElbB, at 544,698 to 545,348
_17270
CSW01_17275: CSW01_17275 - large conductance mechanosensitive channel protein MscL, at 545,619 to 546,029
_17275
CSW01_17280: CSW01_17280 - formate--tetrahydrofolate ligase, at 546,260 to 548,008
_17280
CSW01_17285: CSW01_17285 - peptide-methionine (R)-S-oxide reductase, at 548,136 to 549,320
_17285
Position (kb) 546
547
548
549 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 545.381 kb on + strand at 545.389 kb on - strand at 545.410 kb on + strand at 545.415 kb on + strand at 545.415 kb on + strand at 545.418 kb on - strand at 545.561 kb on - strand at 545.636 kb on + strand at 545.935 kb on - strand, within CSW01_17275 at 546.261 kb on - strand at 546.263 kb on - strand at 546.364 kb on + strand at 546.385 kb on + strand at 546.390 kb on + strand at 546.393 kb on - strand at 546.398 kb on - strand at 546.494 kb on + strand, within CSW01_17280 at 546.494 kb on + strand, within CSW01_17280 at 546.500 kb on + strand, within CSW01_17280 at 546.544 kb on + strand, within CSW01_17280 at 546.552 kb on - strand, within CSW01_17280 at 546.553 kb on - strand, within CSW01_17280 at 546.753 kb on + strand, within CSW01_17280 at 546.887 kb on + strand, within CSW01_17280 at 546.936 kb on + strand, within CSW01_17280 at 546.936 kb on + strand, within CSW01_17280 at 546.982 kb on + strand, within CSW01_17280 at 546.989 kb on + strand, within CSW01_17280 at 547.058 kb on - strand, within CSW01_17280 at 547.068 kb on + strand, within CSW01_17280 at 547.070 kb on - strand, within CSW01_17280 at 547.108 kb on + strand, within CSW01_17280 at 547.149 kb on - strand, within CSW01_17280 at 547.149 kb on - strand, within CSW01_17280 at 547.186 kb on + strand, within CSW01_17280 at 547.228 kb on - strand, within CSW01_17280 at 547.228 kb on - strand, within CSW01_17280 at 547.320 kb on + strand, within CSW01_17280 at 547.320 kb on + strand, within CSW01_17280 at 547.328 kb on - strand, within CSW01_17280 at 547.328 kb on - strand, within CSW01_17280 at 547.519 kb on + strand, within CSW01_17280 at 547.531 kb on + strand, within CSW01_17280 at 547.571 kb on - strand, within CSW01_17280 at 547.699 kb on + strand, within CSW01_17280 at 547.700 kb on + strand, within CSW01_17280 at 547.702 kb on - strand, within CSW01_17280 at 547.708 kb on - strand, within CSW01_17280 at 547.765 kb on - strand, within CSW01_17280 at 547.778 kb on - strand, within CSW01_17280 at 547.787 kb on - strand, within CSW01_17280 at 547.912 kb on + strand at 547.918 kb on - strand at 547.918 kb on - strand at 547.930 kb on - strand at 547.971 kb on + strand at 547.979 kb on - strand at 548.208 kb on + strand at 548.230 kb on + strand at 548.238 kb on - strand at 548.367 kb on + strand, within CSW01_17285 at 548.398 kb on - strand, within CSW01_17285 at 548.411 kb on + strand, within CSW01_17285 at 548.470 kb on + strand, within CSW01_17285 at 548.563 kb on + strand, within CSW01_17285 at 548.638 kb on + strand, within CSW01_17285 at 548.883 kb on + strand, within CSW01_17285 at 548.883 kb on + strand, within CSW01_17285 at 548.904 kb on + strand, within CSW01_17285 at 548.912 kb on - strand, within CSW01_17285 at 548.919 kb on + strand, within CSW01_17285 at 549.003 kb on - strand, within CSW01_17285
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1 remove 545,381 + -3.3 545,389 - +0.8 545,410 + -1.7 545,415 + +1.0 545,415 + +0.2 545,418 - -0.7 545,561 - +1.2 545,636 + +0.9 545,935 - CSW01_17275 0.77 -0.4 546,261 - +0.2 546,263 - +0.6 546,364 + -1.1 546,385 + -0.9 546,390 + -0.7 546,393 - -3.0 546,398 - -0.9 546,494 + CSW01_17280 0.13 -1.4 546,494 + CSW01_17280 0.13 +0.7 546,500 + CSW01_17280 0.14 +0.4 546,544 + CSW01_17280 0.16 +0.3 546,552 - CSW01_17280 0.17 -4.0 546,553 - CSW01_17280 0.17 +0.5 546,753 + CSW01_17280 0.28 -0.2 546,887 + CSW01_17280 0.36 -0.7 546,936 + CSW01_17280 0.39 -3.0 546,936 + CSW01_17280 0.39 +2.9 546,982 + CSW01_17280 0.41 -1.2 546,989 + CSW01_17280 0.42 -2.7 547,058 - CSW01_17280 0.46 +0.7 547,068 + CSW01_17280 0.46 +0.9 547,070 - CSW01_17280 0.46 -0.5 547,108 + CSW01_17280 0.48 -1.2 547,149 - CSW01_17280 0.51 -2.8 547,149 - CSW01_17280 0.51 +0.8 547,186 + CSW01_17280 0.53 -2.1 547,228 - CSW01_17280 0.55 -0.0 547,228 - CSW01_17280 0.55 +0.5 547,320 + CSW01_17280 0.61 -1.0 547,320 + CSW01_17280 0.61 +1.4 547,328 - CSW01_17280 0.61 -1.3 547,328 - CSW01_17280 0.61 +0.7 547,519 + CSW01_17280 0.72 -1.0 547,531 + CSW01_17280 0.73 +1.0 547,571 - CSW01_17280 0.75 +0.6 547,699 + CSW01_17280 0.82 -2.0 547,700 + CSW01_17280 0.82 +0.2 547,702 - CSW01_17280 0.82 +0.1 547,708 - CSW01_17280 0.83 -1.1 547,765 - CSW01_17280 0.86 -1.1 547,778 - CSW01_17280 0.87 +0.8 547,787 - CSW01_17280 0.87 -0.5 547,912 + -3.1 547,918 - +1.1 547,918 - +0.7 547,930 - -1.9 547,971 + -1.1 547,979 - -0.1 548,208 + -3.1 548,230 + -3.2 548,238 - +0.6 548,367 + CSW01_17285 0.19 +1.6 548,398 - CSW01_17285 0.22 +0.4 548,411 + CSW01_17285 0.23 -3.1 548,470 + CSW01_17285 0.28 +0.5 548,563 + CSW01_17285 0.36 +0.8 548,638 + CSW01_17285 0.42 -1.2 548,883 + CSW01_17285 0.63 +0.8 548,883 + CSW01_17285 0.63 -2.0 548,904 + CSW01_17285 0.65 +0.2 548,912 - CSW01_17285 0.65 +1.9 548,919 + CSW01_17285 0.66 -1.4 549,003 - CSW01_17285 0.73 -0.4
Or see this region's nucleotide sequence