Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17100

Experiment: ICP3_phage_0.41_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17095 and CSW01_17100 are separated by 49 nucleotidesCSW01_17100 and CSW01_17105 are separated by 217 nucleotides CSW01_17095: CSW01_17095 - protein acetyltransferase, at 509,289 to 511,970 _17095 CSW01_17100: CSW01_17100 - LysR family transcriptional regulator, at 512,020 to 512,907 _17100 CSW01_17105: CSW01_17105 - TonB-dependent hemoglobin/transferrin/lactoferrin family receptor, at 513,125 to 515,221 _17105 Position (kb) 512 513Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 511.041 kb on + strand, within CSW01_17095at 511.138 kb on + strand, within CSW01_17095at 511.215 kb on - strand, within CSW01_17095at 511.332 kb on - strand, within CSW01_17095at 511.384 kb on - strand, within CSW01_17095at 511.475 kb on + strand, within CSW01_17095at 511.531 kb on + strand, within CSW01_17095at 511.539 kb on - strand, within CSW01_17095at 511.613 kb on - strand, within CSW01_17095at 511.863 kb on + strandat 512.055 kb on - strandat 512.063 kb on + strandat 512.103 kb on - strandat 512.121 kb on + strand, within CSW01_17100at 512.159 kb on + strand, within CSW01_17100at 512.165 kb on + strand, within CSW01_17100at 512.167 kb on - strand, within CSW01_17100at 512.173 kb on - strand, within CSW01_17100at 512.189 kb on + strand, within CSW01_17100at 512.333 kb on + strand, within CSW01_17100at 512.363 kb on - strand, within CSW01_17100at 512.388 kb on + strand, within CSW01_17100at 512.396 kb on - strand, within CSW01_17100at 512.412 kb on + strand, within CSW01_17100at 512.557 kb on - strand, within CSW01_17100at 512.597 kb on + strand, within CSW01_17100at 512.605 kb on - strand, within CSW01_17100at 512.654 kb on + strand, within CSW01_17100at 512.687 kb on + strand, within CSW01_17100at 512.695 kb on - strand, within CSW01_17100at 512.695 kb on - strand, within CSW01_17100at 512.765 kb on + strand, within CSW01_17100at 512.816 kb on + strand, within CSW01_17100at 512.819 kb on - strandat 512.824 kb on - strandat 512.856 kb on + strandat 512.891 kb on - strandat 512.891 kb on - strandat 513.134 kb on + strandat 513.295 kb on - strandat 513.311 kb on - strandat 513.570 kb on + strand, within CSW01_17105at 513.570 kb on + strand, within CSW01_17105at 513.571 kb on - strand, within CSW01_17105at 513.578 kb on - strand, within CSW01_17105at 513.578 kb on - strand, within CSW01_17105at 513.637 kb on + strand, within CSW01_17105at 513.694 kb on + strand, within CSW01_17105at 513.701 kb on + strand, within CSW01_17105at 513.741 kb on + strand, within CSW01_17105at 513.846 kb on - strand, within CSW01_17105

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1
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511,041 + CSW01_17095 0.65 +0.5
511,138 + CSW01_17095 0.69 +0.2
511,215 - CSW01_17095 0.72 -2.6
511,332 - CSW01_17095 0.76 +0.9
511,384 - CSW01_17095 0.78 -2.6
511,475 + CSW01_17095 0.82 +1.8
511,531 + CSW01_17095 0.84 +0.6
511,539 - CSW01_17095 0.84 -1.4
511,613 - CSW01_17095 0.87 -3.3
511,863 + -0.1
512,055 - +0.1
512,063 + -0.1
512,103 - +0.8
512,121 + CSW01_17100 0.11 -1.8
512,159 + CSW01_17100 0.16 -2.4
512,165 + CSW01_17100 0.16 +0.4
512,167 - CSW01_17100 0.17 +0.4
512,173 - CSW01_17100 0.17 +1.8
512,189 + CSW01_17100 0.19 +0.2
512,333 + CSW01_17100 0.35 -2.7
512,363 - CSW01_17100 0.39 +0.3
512,388 + CSW01_17100 0.41 -0.7
512,396 - CSW01_17100 0.42 +1.0
512,412 + CSW01_17100 0.44 -2.1
512,557 - CSW01_17100 0.60 -0.1
512,597 + CSW01_17100 0.65 -2.0
512,605 - CSW01_17100 0.66 -0.1
512,654 + CSW01_17100 0.71 -0.5
512,687 + CSW01_17100 0.75 +0.2
512,695 - CSW01_17100 0.76 +1.1
512,695 - CSW01_17100 0.76 +0.1
512,765 + CSW01_17100 0.84 -2.2
512,816 + CSW01_17100 0.90 -1.1
512,819 - -1.8
512,824 - +0.2
512,856 + +1.1
512,891 - -2.5
512,891 - -2.5
513,134 + -1.6
513,295 - -1.2
513,311 - -2.6
513,570 + CSW01_17105 0.21 -0.1
513,570 + CSW01_17105 0.21 +0.9
513,571 - CSW01_17105 0.21 -1.6
513,578 - CSW01_17105 0.22 +0.5
513,578 - CSW01_17105 0.22 -2.7
513,637 + CSW01_17105 0.24 +0.4
513,694 + CSW01_17105 0.27 +0.2
513,701 + CSW01_17105 0.27 +0.1
513,741 + CSW01_17105 0.29 +1.0
513,846 - CSW01_17105 0.34 -0.4

Or see this region's nucleotide sequence