Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16865

Experiment: ICP3_phage_0.41_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16860 and CSW01_16865 are separated by 146 nucleotidesCSW01_16865 and CSW01_16870 are separated by 466 nucleotides CSW01_16860: CSW01_16860 - tellurium resistance protein, at 456,570 to 457,532 _16860 CSW01_16865: CSW01_16865 - ClC family H(+)/Cl(-) exchange transporter, at 457,679 to 459,085 _16865 CSW01_16870: CSW01_16870 - GTP-binding protein, at 459,552 to 460,541 _16870 Position (kb) 457 458 459 460Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 456.688 kb on + strand, within CSW01_16860at 456.689 kb on + strand, within CSW01_16860at 456.697 kb on - strand, within CSW01_16860at 456.697 kb on - strand, within CSW01_16860at 456.701 kb on - strand, within CSW01_16860at 456.823 kb on - strand, within CSW01_16860at 456.845 kb on - strand, within CSW01_16860at 456.867 kb on - strand, within CSW01_16860at 456.918 kb on + strand, within CSW01_16860at 456.918 kb on + strand, within CSW01_16860at 456.918 kb on + strand, within CSW01_16860at 456.918 kb on + strand, within CSW01_16860at 457.026 kb on - strand, within CSW01_16860at 457.277 kb on + strand, within CSW01_16860at 457.285 kb on - strand, within CSW01_16860at 457.295 kb on + strand, within CSW01_16860at 457.362 kb on - strand, within CSW01_16860at 457.377 kb on + strand, within CSW01_16860at 457.402 kb on - strand, within CSW01_16860at 457.402 kb on - strand, within CSW01_16860at 457.427 kb on - strand, within CSW01_16860at 457.427 kb on - strand, within CSW01_16860at 457.437 kb on - strandat 457.437 kb on - strandat 457.441 kb on + strandat 457.549 kb on - strandat 457.647 kb on - strandat 457.684 kb on + strandat 457.692 kb on - strandat 457.692 kb on - strandat 457.694 kb on - strandat 457.762 kb on - strandat 457.773 kb on + strandat 457.781 kb on - strandat 457.871 kb on + strand, within CSW01_16865at 457.928 kb on + strand, within CSW01_16865at 458.041 kb on - strand, within CSW01_16865at 458.139 kb on - strand, within CSW01_16865at 458.177 kb on + strand, within CSW01_16865at 458.184 kb on - strand, within CSW01_16865at 458.190 kb on - strand, within CSW01_16865at 458.218 kb on - strand, within CSW01_16865at 458.311 kb on - strand, within CSW01_16865at 458.407 kb on + strand, within CSW01_16865at 458.432 kb on + strand, within CSW01_16865at 458.432 kb on + strand, within CSW01_16865at 458.440 kb on - strand, within CSW01_16865at 458.638 kb on + strand, within CSW01_16865at 458.638 kb on + strand, within CSW01_16865at 458.646 kb on - strand, within CSW01_16865at 458.646 kb on - strand, within CSW01_16865at 458.662 kb on + strand, within CSW01_16865at 458.912 kb on - strand, within CSW01_16865at 458.937 kb on - strand, within CSW01_16865at 459.068 kb on + strandat 459.140 kb on + strandat 459.146 kb on - strandat 459.290 kb on + strandat 459.360 kb on + strandat 459.450 kb on + strandat 459.477 kb on + strandat 459.574 kb on + strandat 459.668 kb on - strand, within CSW01_16870at 459.691 kb on - strand, within CSW01_16870at 459.755 kb on - strand, within CSW01_16870at 459.755 kb on - strand, within CSW01_16870at 459.824 kb on - strand, within CSW01_16870at 459.837 kb on + strand, within CSW01_16870at 459.845 kb on - strand, within CSW01_16870at 459.884 kb on + strand, within CSW01_16870at 460.010 kb on - strand, within CSW01_16870at 460.025 kb on + strand, within CSW01_16870

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1
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456,688 + CSW01_16860 0.12 -2.4
456,689 + CSW01_16860 0.12 +1.4
456,697 - CSW01_16860 0.13 -2.5
456,697 - CSW01_16860 0.13 -0.6
456,701 - CSW01_16860 0.14 -2.1
456,823 - CSW01_16860 0.26 -0.0
456,845 - CSW01_16860 0.29 -0.2
456,867 - CSW01_16860 0.31 +0.2
456,918 + CSW01_16860 0.36 -0.1
456,918 + CSW01_16860 0.36 -2.1
456,918 + CSW01_16860 0.36 -1.1
456,918 + CSW01_16860 0.36 -1.1
457,026 - CSW01_16860 0.47 -0.1
457,277 + CSW01_16860 0.73 -1.6
457,285 - CSW01_16860 0.74 -0.5
457,295 + CSW01_16860 0.75 -1.6
457,362 - CSW01_16860 0.82 -1.8
457,377 + CSW01_16860 0.84 +0.2
457,402 - CSW01_16860 0.86 -1.7
457,402 - CSW01_16860 0.86 +0.0
457,427 - CSW01_16860 0.89 -0.7
457,427 - CSW01_16860 0.89 -2.6
457,437 - +0.6
457,437 - +0.7
457,441 + +0.4
457,549 - +0.1
457,647 - +0.0
457,684 + -1.5
457,692 - -0.5
457,692 - -0.8
457,694 - -2.5
457,762 - -1.6
457,773 + +1.9
457,781 - +0.5
457,871 + CSW01_16865 0.14 -1.8
457,928 + CSW01_16865 0.18 +0.1
458,041 - CSW01_16865 0.26 -0.2
458,139 - CSW01_16865 0.33 +0.7
458,177 + CSW01_16865 0.35 -0.2
458,184 - CSW01_16865 0.36 -0.9
458,190 - CSW01_16865 0.36 +0.7
458,218 - CSW01_16865 0.38 -0.3
458,311 - CSW01_16865 0.45 +0.5
458,407 + CSW01_16865 0.52 -1.8
458,432 + CSW01_16865 0.54 -3.0
458,432 + CSW01_16865 0.54 +0.1
458,440 - CSW01_16865 0.54 +0.3
458,638 + CSW01_16865 0.68 -1.0
458,638 + CSW01_16865 0.68 -0.6
458,646 - CSW01_16865 0.69 -2.7
458,646 - CSW01_16865 0.69 +0.0
458,662 + CSW01_16865 0.70 +1.8
458,912 - CSW01_16865 0.88 +1.4
458,937 - CSW01_16865 0.89 -1.9
459,068 + +0.3
459,140 + -1.9
459,146 - +0.1
459,290 + -1.5
459,360 + +1.3
459,450 + +0.6
459,477 + +0.6
459,574 + +2.1
459,668 - CSW01_16870 0.12 -0.0
459,691 - CSW01_16870 0.14 +1.0
459,755 - CSW01_16870 0.21 -0.7
459,755 - CSW01_16870 0.21 -0.9
459,824 - CSW01_16870 0.27 -0.2
459,837 + CSW01_16870 0.29 +1.3
459,845 - CSW01_16870 0.30 -2.1
459,884 + CSW01_16870 0.34 +1.5
460,010 - CSW01_16870 0.46 -0.1
460,025 + CSW01_16870 0.48 -0.9

Or see this region's nucleotide sequence