Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16860

Experiment: ICP3_phage_0.41_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16855 and CSW01_16860 are separated by 196 nucleotidesCSW01_16860 and CSW01_16865 are separated by 146 nucleotides CSW01_16855: CSW01_16855 - CAI-1 autoinducer synthase, at 455,204 to 456,373 _16855 CSW01_16860: CSW01_16860 - tellurium resistance protein, at 456,570 to 457,532 _16860 CSW01_16865: CSW01_16865 - ClC family H(+)/Cl(-) exchange transporter, at 457,679 to 459,085 _16865 Position (kb) 456 457 458Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 455.631 kb on - strand, within CSW01_16855at 455.636 kb on - strand, within CSW01_16855at 455.642 kb on - strand, within CSW01_16855at 455.647 kb on - strand, within CSW01_16855at 455.663 kb on + strand, within CSW01_16855at 455.664 kb on - strand, within CSW01_16855at 455.695 kb on + strand, within CSW01_16855at 455.695 kb on + strand, within CSW01_16855at 455.695 kb on + strand, within CSW01_16855at 455.707 kb on + strand, within CSW01_16855at 455.740 kb on + strand, within CSW01_16855at 455.748 kb on - strand, within CSW01_16855at 455.751 kb on + strand, within CSW01_16855at 455.757 kb on + strand, within CSW01_16855at 455.786 kb on + strand, within CSW01_16855at 455.786 kb on + strand, within CSW01_16855at 455.786 kb on + strand, within CSW01_16855at 455.792 kb on - strand, within CSW01_16855at 455.794 kb on - strand, within CSW01_16855at 455.841 kb on + strand, within CSW01_16855at 455.877 kb on - strand, within CSW01_16855at 455.933 kb on + strand, within CSW01_16855at 455.933 kb on + strand, within CSW01_16855at 455.941 kb on - strand, within CSW01_16855at 455.953 kb on - strand, within CSW01_16855at 455.967 kb on + strand, within CSW01_16855at 456.054 kb on + strand, within CSW01_16855at 456.081 kb on + strand, within CSW01_16855at 456.108 kb on + strand, within CSW01_16855at 456.145 kb on - strand, within CSW01_16855at 456.203 kb on - strand, within CSW01_16855at 456.210 kb on + strand, within CSW01_16855at 456.213 kb on - strand, within CSW01_16855at 456.266 kb on - strandat 456.284 kb on - strandat 456.333 kb on + strandat 456.363 kb on + strandat 456.366 kb on - strandat 456.371 kb on + strandat 456.376 kb on + strandat 456.533 kb on - strandat 456.607 kb on - strandat 456.658 kb on + strandat 456.688 kb on + strand, within CSW01_16860at 456.689 kb on + strand, within CSW01_16860at 456.697 kb on - strand, within CSW01_16860at 456.697 kb on - strand, within CSW01_16860at 456.701 kb on - strand, within CSW01_16860at 456.823 kb on - strand, within CSW01_16860at 456.845 kb on - strand, within CSW01_16860at 456.867 kb on - strand, within CSW01_16860at 456.918 kb on + strand, within CSW01_16860at 456.918 kb on + strand, within CSW01_16860at 456.918 kb on + strand, within CSW01_16860at 456.918 kb on + strand, within CSW01_16860at 457.026 kb on - strand, within CSW01_16860at 457.277 kb on + strand, within CSW01_16860at 457.285 kb on - strand, within CSW01_16860at 457.295 kb on + strand, within CSW01_16860at 457.362 kb on - strand, within CSW01_16860at 457.377 kb on + strand, within CSW01_16860at 457.402 kb on - strand, within CSW01_16860at 457.402 kb on - strand, within CSW01_16860at 457.427 kb on - strand, within CSW01_16860at 457.427 kb on - strand, within CSW01_16860at 457.437 kb on - strandat 457.437 kb on - strandat 457.441 kb on + strandat 457.549 kb on - strandat 457.647 kb on - strandat 457.684 kb on + strandat 457.692 kb on - strandat 457.692 kb on - strandat 457.694 kb on - strandat 457.762 kb on - strandat 457.773 kb on + strandat 457.781 kb on - strandat 457.871 kb on + strand, within CSW01_16865at 457.928 kb on + strand, within CSW01_16865at 458.041 kb on - strand, within CSW01_16865at 458.139 kb on - strand, within CSW01_16865at 458.177 kb on + strand, within CSW01_16865at 458.184 kb on - strand, within CSW01_16865at 458.190 kb on - strand, within CSW01_16865at 458.218 kb on - strand, within CSW01_16865at 458.311 kb on - strand, within CSW01_16865at 458.407 kb on + strand, within CSW01_16865at 458.432 kb on + strand, within CSW01_16865at 458.432 kb on + strand, within CSW01_16865at 458.440 kb on - strand, within CSW01_16865

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1
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455,631 - CSW01_16855 0.36 +1.1
455,636 - CSW01_16855 0.37 -0.4
455,642 - CSW01_16855 0.37 +0.3
455,647 - CSW01_16855 0.38 +1.4
455,663 + CSW01_16855 0.39 +0.8
455,664 - CSW01_16855 0.39 -3.4
455,695 + CSW01_16855 0.42 -0.2
455,695 + CSW01_16855 0.42 -2.5
455,695 + CSW01_16855 0.42 -2.0
455,707 + CSW01_16855 0.43 -0.8
455,740 + CSW01_16855 0.46 -0.6
455,748 - CSW01_16855 0.46 -0.9
455,751 + CSW01_16855 0.47 +1.3
455,757 + CSW01_16855 0.47 -0.3
455,786 + CSW01_16855 0.50 -0.1
455,786 + CSW01_16855 0.50 -3.0
455,786 + CSW01_16855 0.50 -0.5
455,792 - CSW01_16855 0.50 +1.6
455,794 - CSW01_16855 0.50 +0.9
455,841 + CSW01_16855 0.54 -0.2
455,877 - CSW01_16855 0.58 +0.5
455,933 + CSW01_16855 0.62 -1.4
455,933 + CSW01_16855 0.62 +1.5
455,941 - CSW01_16855 0.63 +1.0
455,953 - CSW01_16855 0.64 -2.9
455,967 + CSW01_16855 0.65 -2.4
456,054 + CSW01_16855 0.73 +0.2
456,081 + CSW01_16855 0.75 +0.2
456,108 + CSW01_16855 0.77 -1.5
456,145 - CSW01_16855 0.80 +0.6
456,203 - CSW01_16855 0.85 +0.6
456,210 + CSW01_16855 0.86 +0.9
456,213 - CSW01_16855 0.86 -1.4
456,266 - +0.3
456,284 - -2.1
456,333 + +0.1
456,363 + +0.1
456,366 - +0.1
456,371 + -0.0
456,376 + -0.3
456,533 - +0.5
456,607 - +0.1
456,658 + +0.9
456,688 + CSW01_16860 0.12 -2.4
456,689 + CSW01_16860 0.12 +1.4
456,697 - CSW01_16860 0.13 -2.5
456,697 - CSW01_16860 0.13 -0.6
456,701 - CSW01_16860 0.14 -2.1
456,823 - CSW01_16860 0.26 -0.0
456,845 - CSW01_16860 0.29 -0.2
456,867 - CSW01_16860 0.31 +0.2
456,918 + CSW01_16860 0.36 -0.1
456,918 + CSW01_16860 0.36 -2.1
456,918 + CSW01_16860 0.36 -1.1
456,918 + CSW01_16860 0.36 -1.1
457,026 - CSW01_16860 0.47 -0.1
457,277 + CSW01_16860 0.73 -1.6
457,285 - CSW01_16860 0.74 -0.5
457,295 + CSW01_16860 0.75 -1.6
457,362 - CSW01_16860 0.82 -1.8
457,377 + CSW01_16860 0.84 +0.2
457,402 - CSW01_16860 0.86 -1.7
457,402 - CSW01_16860 0.86 +0.0
457,427 - CSW01_16860 0.89 -0.7
457,427 - CSW01_16860 0.89 -2.6
457,437 - +0.6
457,437 - +0.7
457,441 + +0.4
457,549 - +0.1
457,647 - +0.0
457,684 + -1.5
457,692 - -0.5
457,692 - -0.8
457,694 - -2.5
457,762 - -1.6
457,773 + +1.9
457,781 - +0.5
457,871 + CSW01_16865 0.14 -1.8
457,928 + CSW01_16865 0.18 +0.1
458,041 - CSW01_16865 0.26 -0.2
458,139 - CSW01_16865 0.33 +0.7
458,177 + CSW01_16865 0.35 -0.2
458,184 - CSW01_16865 0.36 -0.9
458,190 - CSW01_16865 0.36 +0.7
458,218 - CSW01_16865 0.38 -0.3
458,311 - CSW01_16865 0.45 +0.5
458,407 + CSW01_16865 0.52 -1.8
458,432 + CSW01_16865 0.54 -3.0
458,432 + CSW01_16865 0.54 +0.1
458,440 - CSW01_16865 0.54 +0.3

Or see this region's nucleotide sequence