Experiment: ICP3_phage_0.41_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16440 and CSW01_16445 are separated by 99 nucleotides CSW01_16445 and CSW01_16450 are separated by 382 nucleotides CSW01_16450 and CSW01_16455 are separated by 232 nucleotides CSW01_16455 and CSW01_16460 overlap by 10 nucleotides
CSW01_16440: CSW01_16440 - hypothetical protein, at 402,004 to 402,401
_16440
CSW01_16445: CSW01_16445 - hypothetical protein, at 402,501 to 402,965
_16445
CSW01_16450: CSW01_16450 - sulfate transporter subunit, at 403,348 to 404,333
_16450
CSW01_16455: CSW01_16455 - DJ-1/PfpI family protein, at 404,566 to 405,162
_16455
CSW01_16460: CSW01_16460 - acetyltransferase, at 405,153 to 405,290
_16460
Position (kb) 403
404
405 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 402.375 kb on - strand at 402.437 kb on + strand at 402.450 kb on - strand at 402.452 kb on + strand at 402.460 kb on - strand at 402.460 kb on - strand at 402.460 kb on - strand at 402.460 kb on - strand at 402.467 kb on - strand at 402.597 kb on + strand, within CSW01_16445 at 402.597 kb on + strand, within CSW01_16445 at 402.605 kb on - strand, within CSW01_16445 at 402.605 kb on - strand, within CSW01_16445 at 402.605 kb on - strand, within CSW01_16445 at 402.641 kb on + strand, within CSW01_16445 at 402.642 kb on + strand, within CSW01_16445 at 402.645 kb on - strand, within CSW01_16445 at 402.652 kb on + strand, within CSW01_16445 at 402.652 kb on + strand, within CSW01_16445 at 402.652 kb on + strand, within CSW01_16445 at 402.652 kb on + strand, within CSW01_16445 at 402.655 kb on - strand, within CSW01_16445 at 402.660 kb on - strand, within CSW01_16445 at 402.660 kb on - strand, within CSW01_16445 at 402.660 kb on - strand, within CSW01_16445 at 402.660 kb on - strand, within CSW01_16445 at 402.660 kb on - strand, within CSW01_16445 at 402.660 kb on - strand, within CSW01_16445 at 402.660 kb on - strand, within CSW01_16445 at 402.660 kb on - strand, within CSW01_16445 at 402.749 kb on + strand, within CSW01_16445 at 402.749 kb on + strand, within CSW01_16445 at 402.757 kb on - strand, within CSW01_16445 at 402.757 kb on - strand, within CSW01_16445 at 402.762 kb on - strand, within CSW01_16445 at 402.767 kb on + strand, within CSW01_16445 at 402.801 kb on + strand, within CSW01_16445 at 402.821 kb on - strand, within CSW01_16445 at 402.902 kb on + strand, within CSW01_16445 at 402.991 kb on + strand at 403.033 kb on - strand at 403.045 kb on - strand at 403.108 kb on - strand at 403.109 kb on - strand at 403.126 kb on + strand at 403.150 kb on + strand at 403.170 kb on - strand at 403.214 kb on + strand at 403.222 kb on - strand at 403.243 kb on - strand at 403.259 kb on + strand at 403.314 kb on + strand at 403.322 kb on - strand at 403.351 kb on + strand at 403.403 kb on + strand at 403.403 kb on + strand at 403.403 kb on + strand at 403.410 kb on - strand at 403.410 kb on - strand at 403.410 kb on - strand at 403.410 kb on - strand at 403.458 kb on + strand, within CSW01_16450 at 403.519 kb on + strand, within CSW01_16450 at 403.558 kb on - strand, within CSW01_16450 at 403.564 kb on - strand, within CSW01_16450 at 403.708 kb on + strand, within CSW01_16450 at 403.708 kb on + strand, within CSW01_16450 at 403.708 kb on + strand, within CSW01_16450 at 403.716 kb on - strand, within CSW01_16450 at 403.716 kb on - strand, within CSW01_16450 at 403.716 kb on - strand, within CSW01_16450 at 403.716 kb on - strand, within CSW01_16450 at 403.726 kb on - strand, within CSW01_16450 at 403.761 kb on + strand, within CSW01_16450 at 403.761 kb on - strand, within CSW01_16450 at 403.762 kb on - strand, within CSW01_16450 at 403.768 kb on + strand, within CSW01_16450 at 403.776 kb on - strand, within CSW01_16450 at 403.821 kb on - strand, within CSW01_16450 at 403.852 kb on + strand, within CSW01_16450 at 403.852 kb on + strand, within CSW01_16450 at 403.852 kb on + strand, within CSW01_16450 at 403.852 kb on + strand, within CSW01_16450 at 403.852 kb on + strand, within CSW01_16450 at 403.852 kb on + strand, within CSW01_16450 at 403.852 kb on + strand, within CSW01_16450 at 403.852 kb on + strand, within CSW01_16450 at 403.852 kb on + strand, within CSW01_16450 at 403.852 kb on + strand, within CSW01_16450 at 403.852 kb on + strand, within CSW01_16450 at 403.852 kb on + strand, within CSW01_16450 at 403.852 kb on + strand, within CSW01_16450 at 403.852 kb on + strand, within CSW01_16450 at 403.852 kb on + strand, within CSW01_16450 at 403.852 kb on + strand, within CSW01_16450 at 403.852 kb on + strand, within CSW01_16450 at 403.852 kb on + strand, within CSW01_16450 at 403.852 kb on + strand, within CSW01_16450 at 403.852 kb on + strand, within CSW01_16450 at 403.860 kb on - strand, within CSW01_16450 at 403.860 kb on - strand, within CSW01_16450 at 403.860 kb on - strand, within CSW01_16450 at 403.860 kb on - strand, within CSW01_16450 at 403.860 kb on - strand, within CSW01_16450 at 403.860 kb on - strand, within CSW01_16450 at 403.860 kb on - strand, within CSW01_16450 at 403.860 kb on - strand, within CSW01_16450 at 403.860 kb on - strand, within CSW01_16450 at 403.860 kb on - strand, within CSW01_16450 at 403.860 kb on - strand, within CSW01_16450 at 403.860 kb on - strand, within CSW01_16450 at 403.860 kb on - strand, within CSW01_16450 at 403.860 kb on - strand, within CSW01_16450 at 403.860 kb on - strand, within CSW01_16450 at 403.860 kb on - strand, within CSW01_16450 at 403.860 kb on - strand, within CSW01_16450 at 403.860 kb on - strand, within CSW01_16450 at 403.860 kb on - strand, within CSW01_16450 at 403.860 kb on - strand, within CSW01_16450 at 403.860 kb on - strand, within CSW01_16450 at 403.860 kb on - strand, within CSW01_16450 at 403.860 kb on - strand, within CSW01_16450 at 403.860 kb on - strand, within CSW01_16450 at 403.860 kb on - strand, within CSW01_16450 at 403.860 kb on - strand, within CSW01_16450 at 403.892 kb on - strand, within CSW01_16450 at 403.899 kb on + strand, within CSW01_16450 at 403.907 kb on - strand, within CSW01_16450 at 403.930 kb on + strand, within CSW01_16450 at 403.930 kb on + strand, within CSW01_16450 at 403.938 kb on - strand, within CSW01_16450 at 403.967 kb on + strand, within CSW01_16450 at 403.975 kb on - strand, within CSW01_16450 at 403.999 kb on + strand, within CSW01_16450 at 404.009 kb on + strand, within CSW01_16450 at 404.146 kb on + strand, within CSW01_16450 at 404.154 kb on - strand, within CSW01_16450 at 404.154 kb on - strand, within CSW01_16450 at 404.160 kb on + strand, within CSW01_16450 at 404.214 kb on + strand, within CSW01_16450 at 404.214 kb on + strand, within CSW01_16450 at 404.222 kb on - strand, within CSW01_16450 at 404.222 kb on - strand, within CSW01_16450 at 404.267 kb on - strand at 404.462 kb on - strand at 404.462 kb on - strand at 404.630 kb on + strand, within CSW01_16455 at 404.631 kb on + strand, within CSW01_16455 at 404.655 kb on - strand, within CSW01_16455 at 404.665 kb on + strand, within CSW01_16455 at 404.814 kb on - strand, within CSW01_16455 at 404.859 kb on + strand, within CSW01_16455 at 404.974 kb on + strand, within CSW01_16455 at 405.023 kb on + strand, within CSW01_16455 at 405.030 kb on + strand, within CSW01_16455 at 405.109 kb on - strand at 405.144 kb on - strand at 405.191 kb on - strand, within CSW01_16460 at 405.196 kb on - strand, within CSW01_16460
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1 remove 402,375 - -1.9 402,437 + -0.3 402,450 - -2.1 402,452 + -0.2 402,460 - -0.5 402,460 - +1.3 402,460 - -0.0 402,460 - +0.4 402,467 - +0.3 402,597 + CSW01_16445 0.21 +0.4 402,597 + CSW01_16445 0.21 +0.2 402,605 - CSW01_16445 0.22 -2.7 402,605 - CSW01_16445 0.22 -2.4 402,605 - CSW01_16445 0.22 -3.4 402,641 + CSW01_16445 0.30 -2.2 402,642 + CSW01_16445 0.30 -0.1 402,645 - CSW01_16445 0.31 +0.4 402,652 + CSW01_16445 0.32 -0.4 402,652 + CSW01_16445 0.32 -0.1 402,652 + CSW01_16445 0.32 -1.4 402,652 + CSW01_16445 0.32 +0.6 402,655 - CSW01_16445 0.33 -0.8 402,660 - CSW01_16445 0.34 +0.0 402,660 - CSW01_16445 0.34 +0.3 402,660 - CSW01_16445 0.34 +0.4 402,660 - CSW01_16445 0.34 -1.3 402,660 - CSW01_16445 0.34 -0.2 402,660 - CSW01_16445 0.34 -1.5 402,660 - CSW01_16445 0.34 -2.8 402,660 - CSW01_16445 0.34 +0.6 402,749 + CSW01_16445 0.53 -1.2 402,749 + CSW01_16445 0.53 -0.5 402,757 - CSW01_16445 0.55 -0.7 402,757 - CSW01_16445 0.55 -0.2 402,762 - CSW01_16445 0.56 +0.4 402,767 + CSW01_16445 0.57 -0.0 402,801 + CSW01_16445 0.65 -2.1 402,821 - CSW01_16445 0.69 +0.4 402,902 + CSW01_16445 0.86 -0.2 402,991 + +0.7 403,033 - -0.9 403,045 - -1.8 403,108 - -1.2 403,109 - +0.8 403,126 + +0.2 403,150 + +0.1 403,170 - -0.2 403,214 + -1.4 403,222 - -1.0 403,243 - +0.3 403,259 + +0.2 403,314 + -0.2 403,322 - +0.1 403,351 + +0.6 403,403 + -0.6 403,403 + -0.2 403,403 + +0.0 403,410 - +0.7 403,410 - -1.7 403,410 - -0.6 403,410 - +0.8 403,458 + CSW01_16450 0.11 -0.5 403,519 + CSW01_16450 0.17 -0.3 403,558 - CSW01_16450 0.21 +0.0 403,564 - CSW01_16450 0.22 -0.7 403,708 + CSW01_16450 0.37 -2.4 403,708 + CSW01_16450 0.37 -0.3 403,708 + CSW01_16450 0.37 -0.2 403,716 - CSW01_16450 0.37 -0.1 403,716 - CSW01_16450 0.37 -0.8 403,716 - CSW01_16450 0.37 -1.2 403,716 - CSW01_16450 0.37 -0.8 403,726 - CSW01_16450 0.38 -3.2 403,761 + CSW01_16450 0.42 -0.2 403,761 - CSW01_16450 0.42 -0.3 403,762 - CSW01_16450 0.42 +1.5 403,768 + CSW01_16450 0.43 +1.6 403,776 - CSW01_16450 0.43 -3.2 403,821 - CSW01_16450 0.48 -0.7 403,852 + CSW01_16450 0.51 -1.8 403,852 + CSW01_16450 0.51 -0.7 403,852 + CSW01_16450 0.51 -2.3 403,852 + CSW01_16450 0.51 +0.0 403,852 + CSW01_16450 0.51 -2.5 403,852 + CSW01_16450 0.51 -1.8 403,852 + CSW01_16450 0.51 -0.2 403,852 + CSW01_16450 0.51 -1.3 403,852 + CSW01_16450 0.51 -0.8 403,852 + CSW01_16450 0.51 +1.0 403,852 + CSW01_16450 0.51 -2.4 403,852 + CSW01_16450 0.51 -1.9 403,852 + CSW01_16450 0.51 -2.3 403,852 + CSW01_16450 0.51 -0.8 403,852 + CSW01_16450 0.51 +0.7 403,852 + CSW01_16450 0.51 -1.4 403,852 + CSW01_16450 0.51 -1.8 403,852 + CSW01_16450 0.51 -0.1 403,852 + CSW01_16450 0.51 -0.1 403,852 + CSW01_16450 0.51 +0.2 403,860 - CSW01_16450 0.52 -2.2 403,860 - CSW01_16450 0.52 +0.8 403,860 - CSW01_16450 0.52 +1.3 403,860 - CSW01_16450 0.52 +1.2 403,860 - CSW01_16450 0.52 +0.3 403,860 - CSW01_16450 0.52 -1.2 403,860 - CSW01_16450 0.52 -3.2 403,860 - CSW01_16450 0.52 +0.3 403,860 - CSW01_16450 0.52 -1.4 403,860 - CSW01_16450 0.52 +1.2 403,860 - CSW01_16450 0.52 +1.1 403,860 - CSW01_16450 0.52 +1.5 403,860 - CSW01_16450 0.52 +0.5 403,860 - CSW01_16450 0.52 -1.7 403,860 - CSW01_16450 0.52 -0.7 403,860 - CSW01_16450 0.52 +2.0 403,860 - CSW01_16450 0.52 -0.5 403,860 - CSW01_16450 0.52 -1.2 403,860 - CSW01_16450 0.52 +0.4 403,860 - CSW01_16450 0.52 -0.7 403,860 - CSW01_16450 0.52 +0.8 403,860 - CSW01_16450 0.52 -0.6 403,860 - CSW01_16450 0.52 -0.6 403,860 - CSW01_16450 0.52 -1.3 403,860 - CSW01_16450 0.52 -0.2 403,860 - CSW01_16450 0.52 -0.6 403,892 - CSW01_16450 0.55 +1.3 403,899 + CSW01_16450 0.56 +0.5 403,907 - CSW01_16450 0.57 -0.6 403,930 + CSW01_16450 0.59 -1.3 403,930 + CSW01_16450 0.59 +0.6 403,938 - CSW01_16450 0.60 +0.4 403,967 + CSW01_16450 0.63 +0.3 403,975 - CSW01_16450 0.64 -0.8 403,999 + CSW01_16450 0.66 +0.9 404,009 + CSW01_16450 0.67 +1.0 404,146 + CSW01_16450 0.81 -1.2 404,154 - CSW01_16450 0.82 -2.0 404,154 - CSW01_16450 0.82 -2.0 404,160 + CSW01_16450 0.82 +1.0 404,214 + CSW01_16450 0.88 -1.9 404,214 + CSW01_16450 0.88 +0.3 404,222 - CSW01_16450 0.89 -2.7 404,222 - CSW01_16450 0.89 -0.7 404,267 - -0.7 404,462 - -0.5 404,462 - -0.5 404,630 + CSW01_16455 0.11 -0.2 404,631 + CSW01_16455 0.11 +2.5 404,655 - CSW01_16455 0.15 -0.0 404,665 + CSW01_16455 0.17 +1.2 404,814 - CSW01_16455 0.42 -0.4 404,859 + CSW01_16455 0.49 -1.5 404,974 + CSW01_16455 0.68 -3.1 405,023 + CSW01_16455 0.77 -1.7 405,030 + CSW01_16455 0.78 -2.8 405,109 - -1.4 405,144 - -1.1 405,191 - CSW01_16460 0.28 -2.2 405,196 - CSW01_16460 0.31 +0.6
Or see this region's nucleotide sequence