Experiment: ICP3_phage_0.41_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16095 and CSW01_16100 are separated by 129 nucleotides CSW01_16100 and CSW01_16105 overlap by 53 nucleotides CSW01_16105 and CSW01_16110 are separated by 14 nucleotides CSW01_16110 and CSW01_16115 overlap by 30 nucleotides CSW01_16115 and CSW01_16120 overlap by 2 nucleotides
CSW01_16095: CSW01_16095 - hypothetical protein, at 371,670 to 372,545
_16095
CSW01_16100: CSW01_16100 - N-acetyltransferase, at 372,675 to 373,130
_16100
CSW01_16105: CSW01_16105 - hypothetical protein, at 373,078 to 373,299
_16105
CSW01_16110: CSW01_16110 - VOC family protein, at 373,314 to 373,727
_16110
CSW01_16115: CSW01_16115 - hypothetical protein, at 373,698 to 373,879
_16115
CSW01_16120: CSW01_16120 - N-acetyltransferase, at 373,878 to 374,312
_16120
Position (kb) 373
374 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 372.084 kb on - strand, within CSW01_16095 at 372.084 kb on - strand, within CSW01_16095 at 372.084 kb on - strand, within CSW01_16095 at 372.084 kb on - strand, within CSW01_16095 at 372.084 kb on - strand, within CSW01_16095 at 372.084 kb on - strand, within CSW01_16095 at 372.084 kb on - strand, within CSW01_16095 at 372.084 kb on - strand, within CSW01_16095 at 372.258 kb on + strand, within CSW01_16095 at 372.380 kb on - strand, within CSW01_16095 at 372.385 kb on - strand, within CSW01_16095 at 372.385 kb on - strand, within CSW01_16095 at 372.405 kb on - strand, within CSW01_16095 at 373.903 kb on - strand at 373.930 kb on - strand, within CSW01_16120 at 373.930 kb on - strand, within CSW01_16120 at 373.970 kb on + strand, within CSW01_16120 at 373.980 kb on - strand, within CSW01_16120 at 373.980 kb on - strand, within CSW01_16120 at 374.244 kb on - strand, within CSW01_16120 at 374.276 kb on + strand at 374.276 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1 remove 372,084 - CSW01_16095 0.47 -2.2 372,084 - CSW01_16095 0.47 -0.3 372,084 - CSW01_16095 0.47 -2.7 372,084 - CSW01_16095 0.47 -1.3 372,084 - CSW01_16095 0.47 -0.4 372,084 - CSW01_16095 0.47 -0.0 372,084 - CSW01_16095 0.47 -2.1 372,084 - CSW01_16095 0.47 -0.4 372,258 + CSW01_16095 0.67 +0.1 372,380 - CSW01_16095 0.81 +0.3 372,385 - CSW01_16095 0.82 +1.8 372,385 - CSW01_16095 0.82 +0.2 372,405 - CSW01_16095 0.84 +0.5 373,903 - +0.4 373,930 - CSW01_16120 0.12 +1.9 373,930 - CSW01_16120 0.12 +0.1 373,970 + CSW01_16120 0.21 -0.0 373,980 - CSW01_16120 0.23 -1.3 373,980 - CSW01_16120 0.23 -1.0 374,244 - CSW01_16120 0.84 +1.4 374,276 + -2.9 374,276 + +0.8
Or see this region's nucleotide sequence